Clone RE62510 Report

Search the DGRC for RE62510

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:625
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG42565-RA
Protein status:RE62510.pep: gold
Preliminary Size:320
Sequenced Size:2647

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13510 2002-01-01 Sim4 clustering to Release 2
CG13510 2003-01-01 Sim4 clustering to Release 3
CG13512 2005-05-16 Blastp of sequenced clone
CG13512 2008-04-29 Release 5.5 accounting
CG13510 2008-08-15 Release 5.9 accounting
CG13512 2008-08-15 Release 5.9 accounting
CG13512 2008-12-18 5.12 accounting
CG13510 2008-12-18 5.12 accounting

Clone Sequence Records

RE62510.complete Sequence

2647 bp (2647 high quality bases) assembled on 2005-05-16

GenBank Submission: BT022713

> RE62510.complete
AGTGCAACGCCAGCCAGCAAAGCGATCGGTTCAGTTCGGCCGGAAATCCA
GAGTCTGCATCAAGAAGAAACATAATCCGAAACTATGGACAGCAAGCAGC
CTCCACCGTACAGTGAACAGTCCGGATACACTCCCGCACAAACCTATCAG
CCCGGTGGCCCCACCCAGCCACCACTGTACCCACCGATGCCGCAGCCACC
GCAGTCCTCAACGGTGATCATCCAGACCACCACAACCTCCAACCTGGTGC
CCATCGGCAGTGGACCCACCCGCATCCGCTGTCCCTCCTGTCACGCCGAA
GTACTGACCACCGTGAAGTCCACTCCTTCCGGCAGGACGCACTGCTGGGC
CCTCATCCTGTGCCTGTTCATCTGCTGGCCGTGCGTATGCCTACCTTACT
GCATGGACTCCTGCCAGAATGCCAACCACTACTGCCCCAACTGCAGCGCC
TACATCGGCACCTACGAGAACTAACTAACTAACGCCTATTTATGCATACA
AACGTATATACCTATAGAGAACCCTAAGCACTAGCGTCATAACCGAGAAA
AATTGAACTGTAAATACACATGTACGAACGCCACACATTAAACTCATGAG
ACTCACACAGGAAACAGAAATGCGACAAGATATCTTGGGACAAGGCACTC
TTTCCGCTAAATGGATTATGAAGTAATTTAATATTTTCAGAAATGTCTAT
GATAATGTTGACATTATTTAGTATTTTCCACTACATTTTGTACTGGTACT
AAACAATTTCGATCGATCATTACGAGAAACCAACGCCAACATTTTAATGA
CCATTTTAAAACAATCTTTTTACTTTTTACTATCGCTTAAAAACCGTAAT
CAGTAAAATGGATCATAAATATCATAAATAGCTAAGACTATATCAATTGT
TGTCTAGGAAACATAAACCCTTCTGGCACCTACTCAAGCCAACAACTGGA
AATGGCCAAATGGCACAGAGCTACTGGAACCGAATGTCAATCGATTAGGT
ACTGCACTGGCCGACTCCTCTTGTACCCCTCCATATCGTCATAGTCATAG
TAGGTTTCACCTAAAAAGTACTTGTCGATTAGTCAGAAAAGATAACGATT
GCGATAGAGCAATGTTGTCATTAAATGGCGGGCTATTTCAGTGCATGCCC
CGCCGCAAACATGAGCAGCACATGGATGGGCAGAGCTCCAGAACCGGCCG
ACACGGAAATGGTGACCGTAACCACGCAGCCAAACTATGGGGTGGTGGTG
ACCCAGATACCCGTCTACACCCTGAACGGAGTGGGGCCGGGCGCACATCC
ACTGGCTGTGGGCTGCAAGCCGATGAGGGTGAGGTGTCCGTCCTGCAGGG
GCGAGGTCACCACCAGTCTGGCCACGTCCCCCACCCGCAAGACCCACATG
TGCGCTCTGACCTTGTATATCTGCTGGTGAGTGGGGCGTCAGGATACCAC
CGGGCTTACTAACTTTGCTAACCTGATTCTCCAGCTGCTGGCCCTTCATC
TGCCTTCCCTACTTCATCAACTACTGCAAGAGTGTCCAGCACTACTGTCC
CAACTGTGGATGCCACATTGGGAGCTATAGCATTTGATCAAGTGCTGTGT
CTCCGCACTGCCAAAAATGCCTTCCATGTCAAGACTTAATCAAGATTAGC
CATATATGTATACAGATACATAAAATAATAACGTTTTAAATTTAAGTTCT
TTTTGTTAATGACGGATGGTTTCTACTACTCTCACTGCACATATGAAGTA
ATCTTTTCTGGTCCATAATTTCCTCACCTAGTGTGCCAGTAGATAGATTT
TATATTCGTATTAGGATAAATACCCAGAATATGAGGAAAGCGAATCAATT
GAGTACCGATACCGATAAGGCAGTTCTGAGTTTAATGAAACTGTCATCGA
TATACATATACGGAAGCTTTCAGTATTATATCAGTGCTCGTTCGCAGCTG
TAAGCAACTGGTTGATATTTTTAGTGTGATTTGAAGAGTATAGAAAAGCA
TGCGTTGCTACAAGCGCGTAGACTCCCCGCCGCCCTACTCGGATCCATTC
GCCACCGCTCCTCCAGCGGAGGACGTCATGCAGCAGAACCTGGCGTCGCC
CGCACATCCCAATCCGGTGATACCCGTGATGGCCCAAACCATGCCGGTGT
TGCAGCCCGTAAGCGTGATGCATCACCAGACGACAGTGCTGGTGGACAAT
ACCCGCCAGGGAACGATCTGTCCCCACTGCAACGCTCGGATTCGCCTTCG
CGTGGAGCACCATCCTACCGGATCAACTTACTGTATGGCGGCGTTGCTCT
GCCTATTCCTATGCTGGCCCTGCGTCTGCGCCCCTTGCTGCTGCAACTGT
TGCTACAAGACCTCCCAGTACTGTCCCAACTGCAACTCCTGCTTGGGTTC
GTTTTGAAGACGCAGCGAAAACACTCGCCGATTTCATATCATTTCATTTT
ATATATATGTATATATATATACATAACCAACTATACATACATATATGTAT
GTATGTTCATATCTCCTTATGTATCGACGGCGTCAATGTGGTGTCTTCAT
CACTTAACATACATAAAAATATGTTTGCTTAGTGAGCAAAATAAGCTGAC
AGCGAAAAAATAAACAAATAGATTTTGAAACAAAAAAAAAAAAAAAA

RE62510.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13510-RA 985 CG13510-RA 114..985 1..872 4360 100 Plus
CG42565-RA 838 CG42565-RA 1..832 1798..2629 4145 99.8 Plus
CG13511-RA 818 CG13511-RA 1..563 864..1426 2815 100 Plus
CG13511-RA 818 CG13511-RA 563..818 1484..1739 1280 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18545487..18547425 372..2310 9605 99.7 Plus
chr2R 21145070 chr2R 18544469..18544839 1..371 1840 99.7 Plus
chr2R 21145070 chr2R 18547632..18547946 2311..2629 1485 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22658923..22660861 372..2310 9680 99.9 Plus
2R 25286936 2R 22657905..22658275 1..371 1855 100 Plus
2R 25286936 2R 22661069..22661387 2311..2629 1595 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22660122..22662060 372..2310 9680 99.9 Plus
2R 25260384 2R 22659104..22659474 1..371 1855 100 Plus
2R 25260384 2R 22662268..22662586 2311..2629 1595 100 Plus
2R 25260384 2R 22665399..22665475 397..473 145 79.2 Plus
Blast to na_te.dros performed on 2019-03-16 23:28:53 has no hits.

RE62510.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:29:57 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18544469..18544839 1..371 99 -> Plus
chr2R 18545487..18547425 372..2310 99 -> Plus
chr2R 18547632..18547770 2311..2449 100 == Plus
chr2R 18547822..18547948 2505..2631 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:09 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 1..408 2000..2407 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:27:55 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 1..408 2000..2407 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:20:52 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 1..408 2000..2407 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:11:55 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 1..408 2000..2407 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:45 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 1..408 2000..2407 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:31:18 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 1..698 1932..2629 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:27:55 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG42565-RA 1..700 1932..2631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:20:52 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG13510-RB 1..875 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:11:55 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG13512-RA 1..698 1932..2629 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:45 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
CG13510-RC 5..1437 1..1434 99 == Plus
CG13510-RC 1438..2577 1492..2631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:57 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22661069..22661389 2311..2631 99   Plus
2R 22657905..22658275 1..371 100 -> Plus
2R 22658923..22660861 372..2310 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:57 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22661069..22661389 2311..2631 99   Plus
2R 22657905..22658275 1..371 100 -> Plus
2R 22658923..22660861 372..2310 99 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:57 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22661069..22661389 2311..2631 99   Plus
2R 22657905..22658275 1..371 100 -> Plus
2R 22658923..22660861 372..2310 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:20:52 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18545410..18545780 1..371 100 -> Plus
arm_2R 18546428..18548366 372..2310 99 -> Plus
arm_2R 18548574..18548894 2311..2631 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:48:31 Download gff for RE62510.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22659104..22659474 1..371 100 -> Plus
2R 22660122..22662060 372..2310 99 -> Plus
2R 22662268..22662588 2311..2631 99   Plus

RE62510.hyp Sequence

Translation from 1999 to 2406

> RE62510.hyp
MRCYKRVDSPPPYSDPFATAPPAEDVMQQNLASPAHPNPVIPVMAQTMPV
LQPVSVMHHQTTVLVDNTRQGTICPHCNARIRLRVEHHPTGSTYCMAALL
CLFLCWPCVCAPCCCNCCYKTSQYCPNCNSCLGSF*

RE62510.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-PB 135 CG42565-PB 1..135 1..135 783 100 Plus
CG42565-PA 135 CG42565-PA 1..135 1..135 783 100 Plus
CG13510-PC 129 CG13510-PC 6..127 10..135 225 36.7 Plus
CG13510-PB 129 CG13510-PB 6..127 10..135 225 36.7 Plus
CG13510-PA 129 CG13510-PA 6..127 10..135 225 36.7 Plus

RE62510.pep Sequence

Translation from 1999 to 2406

> RE62510.pep
MRCYKRVDSPPPYSDPFATAPPAEDVMQQNLASPAHPNPVIPVMAQTMPV
LQPVSVMHHQTTVLVDNTRQGTICPHCNARIRLRVEHHPTGSTYCMAALL
CLFLCWPCVCAPCCCNCCYKTSQYCPNCNSCLGSF*

RE62510.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11283-PA 145 GF11283-PA 3..145 4..135 220 60.1 Plus
Dana\GF11281-PA 129 GF11281-PA 66..127 74..135 170 46.8 Plus
Dana\GF11635-PA 127 GF11635-PA 42..124 53..135 148 37.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21061-PA 129 GG21061-PA 4..127 8..135 169 31.3 Plus
Dere\GG22779-PA 128 GG22779-PA 32..125 42..135 161 35.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19762-PA 102 GH19762-PA 1..100 27..135 178 37.6 Plus
Dgri\GH19761-PA 135 GH19761-PA 72..133 74..135 167 46.8 Plus
Dgri\GH19768-PA 137 GH19768-PA 47..134 48..135 137 34.1 Plus
Dgri\GH19769-PA 142 GH19769-PA 74..139 70..135 135 40.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG42565-PB 135 CG42565-PB 1..135 1..135 783 100 Plus
CG42565-PA 135 CG42565-PA 1..135 1..135 783 100 Plus
CG13510-PC 129 CG13510-PC 6..127 10..135 225 36.7 Plus
CG13510-PB 129 CG13510-PB 6..127 10..135 225 36.7 Plus
CG13510-PA 129 CG13510-PA 6..127 10..135 225 36.7 Plus
CG30273-PB 128 CG30273-PB 5..125 28..135 196 33.1 Plus
CG13516-PB 168 CG13516-PB 38..161 7..135 172 33.6 Plus
CG13516-PA 168 CG13516-PA 38..161 7..135 172 33.6 Plus
CG30269-PB 144 CG30269-PB 30..141 21..135 170 34.2 Plus
CG30269-PA 144 CG30269-PA 30..141 21..135 170 34.2 Plus
CG42566-PA 77 CG42566-PA 13..75 73..135 157 34.9 Plus
CG42566-PB 77 CG42566-PB 13..75 73..135 157 34.9 Plus
CG32280-PD 130 CG32280-PD 6..128 19..135 146 29.3 Plus
CG32280-PC 130 CG32280-PC 6..128 19..135 146 29.3 Plus
CG32280-PB 130 CG32280-PB 6..128 19..135 146 29.3 Plus
CG32280-PA 130 CG32280-PA 6..128 19..135 146 29.3 Plus
CG13511-PB 122 CG13511-PB 59..120 74..135 137 35.5 Plus
CG13511-PA 122 CG13511-PA 59..120 74..135 137 35.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20301-PA 119 GI20301-PA 1..117 1..130 208 40.3 Plus
Dmoj\GI20298-PA 135 GI20298-PA 72..133 74..135 171 48.4 Plus
Dmoj\GI20300-PA 165 GI20300-PA 81..162 55..134 162 41.5 Plus
Dmoj\GI20299-PA 103 GI20299-PA 40..101 74..135 157 46.8 Plus
Dmoj\GI20307-PA 126 GI20307-PA 62..123 74..135 137 41.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11361-PA 129 GL11361-PA 66..127 74..135 174 48.4 Plus
Dper\GL11363-PA 136 GL11363-PA 1..136 1..135 169 51.1 Plus
Dper\GL11366-PA 129 GL11366-PA 14..126 16..135 162 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12335-PA 129 GA12335-PA 66..127 74..135 174 48.4 Plus
Dpse\GA24695-PA 136 GA24695-PA 1..136 1..135 169 51.1 Plus
Dpse\GA15742-PA 129 GA15742-PA 14..126 16..135 162 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15933-PA 135 GM15933-PA 1..135 1..135 518 85.9 Plus
Dsec\GM15931-PA 129 GM15931-PA 66..127 74..135 169 46.8 Plus
Dsec\GM15936-PA 156 GM15936-PA 71..153 53..135 159 37.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11686-PA 135 GD11686-PA 1..135 1..135 508 85.2 Plus
Dsim\GD11684-PA 129 GD11684-PA 66..127 74..135 169 46.8 Plus
Dsim\GD11689-PA 128 GD11689-PA 43..125 53..135 163 38.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22028-PA 133 GJ22028-PA 1..133 1..135 221 49.3 Plus
Dvir\GJ22026-PA 137 GJ22026-PA 74..135 74..135 162 45.2 Plus
Dvir\GJ22027-PA 152 GJ22027-PA 67..149 56..134 142 42.2 Plus
Dvir\GJ22033-PA 113 GJ22033-PA 49..110 74..135 133 41.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21441-PA 153 GK21441-PA 1..153 1..135 303 49.4 Plus
Dwil\GK21440-PA 130 GK21440-PA 4..128 8..135 183 35.2 Plus
Dwil\GK21444-PA 121 GK21444-PA 29..118 46..135 177 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14005-PA 131 GE14005-PA 3..131 4..135 419 78.2 Plus
Dyak\GE14003-PA 128 GE14003-PA 65..126 74..135 169 46.8 Plus
Dyak\GE14008-PA 128 GE14008-PA 43..125 53..135 162 38.6 Plus