BDGP Sequence Production Resources |
Search the DGRC for RE62581
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 625 |
Well: | 81 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL21-RA |
Protein status: | RE62581.pep: gold |
Preliminary Size: | 639 |
Sequenced Size: | 629 |
Gene | Date | Evidence |
---|---|---|
CG12775 | 2001-12-17 | Blastp of sequenced clone |
CG12775 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12775 | 2003-01-01 | Sim4 clustering to Release 3 |
RpL21 | 2008-04-29 | Release 5.5 accounting |
RpL21 | 2008-08-15 | Release 5.9 accounting |
RpL21 | 2008-12-18 | 5.12 accounting |
629 bp (629 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071556
> RE62581.complete ATCTTTCTTTCTTTTCTCAACTATACGACCGCGTGGACGGGATTATAAAT AAAAATGACCAACTCAAAGGGCTATCGTCGCGGCACACGGGACATGTTTT CCCGTCCCTTCCGAAAGCATGGAGTTATTCCGTTGTCCACATACATGCGG GTTTTCAAGATCGGCGACATCGTTGACATTAAGGGACATGGTGCTGTACA GAAGGGTTTGCCCTATAAGGCATATCATGGCAAAACCGGGCGCATATTCA ATGTGACTCAGCACGCCGTTGGTGTAATAGTAAACAAACGCGTAAGAGGC AAAATCCTTGCTAAGCGGGTCAATGTGCGCATTGAGCACATCCACCACTC CAAGTGCCGCGAAGATTTTTTGCGCCGCGTAAAGGAAAATGAGCGATTGC TGAAGGAGGCGAAGGAAAAGGGACAATGGGTCAGTCTGAAGCGCCAGCCG GAACAGCCGAAGAAGGCGCACTTTGTTAAGAAACTTGAAGAACCGATTGC TCTGGCCCCGATTCCATACGAATTCATTGCCTAAAGGCATTTTACTGCTC GGAAATTGTACGGAATGAAATAATATTTGATATAATTTCAGTAAACAAAA AAAATGTGCCCAATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL21-RA | 826 | RpL21-RA | 44..662 | 1..619 | 3080 | 99.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 22245678..22246253 | 39..614 | 100 | <- | Minus |
chr2L | 22246328..22246365 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..480 | 55..534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..480 | 55..534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..480 | 55..534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..480 | 55..534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..480 | 55..534 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..614 | 1..614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..614 | 1..614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..614 | 1..614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..614 | 1..614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL21-RA | 1..614 | 1..614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22247146..22247721 | 39..614 | 100 | <- | Minus |
2L | 22247796..22247833 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22247146..22247721 | 39..614 | 100 | <- | Minus |
2L | 22247796..22247833 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22247146..22247721 | 39..614 | 100 | <- | Minus |
2L | 22247796..22247833 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 22247146..22247721 | 39..614 | 100 | <- | Minus |
arm_2L | 22247796..22247833 | 1..38 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 22247146..22247721 | 39..614 | 100 | <- | Minus |
2L | 22247796..22247833 | 1..38 | 100 | Minus |
Translation from 54 to 533
> RE62581.pep MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQK GLPYKAYHGKTGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSK CREDFLRRVKENERLLKEAKEKGQWVSLKRQPEQPKKAHFVKKLEEPIAL APIPYEFIA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22757-PA | 159 | GF22757-PA | 1..159 | 1..159 | 831 | 99.4 | Plus |
Dana\GF22685-PA | 97 | GF22685-PA | 2..97 | 56..159 | 447 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21369-PA | 159 | GG21369-PA | 1..159 | 1..159 | 834 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13288-PA | 159 | GH13288-PA | 1..159 | 1..159 | 789 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL21-PC | 159 | CG12775-PC | 1..159 | 1..159 | 834 | 100 | Plus |
RpL21-PB | 159 | CG12775-PB | 1..159 | 1..159 | 834 | 100 | Plus |
RpL21-PA | 159 | CG12775-PA | 1..159 | 1..159 | 834 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17481-PA | 159 | GI17481-PA | 1..159 | 1..159 | 796 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21175-PA | 159 | GL21175-PA | 1..159 | 1..159 | 828 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11806-PB | 159 | GA11806-PB | 1..159 | 1..159 | 828 | 98.7 | Plus |
Dpse\GA11806-PA | 159 | GA11806-PA | 1..159 | 1..159 | 828 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18795-PA | 159 | GM18795-PA | 1..159 | 1..159 | 834 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24352-PA | 159 | GD24352-PA | 1..159 | 1..159 | 834 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15013-PA | 159 | GJ15013-PA | 1..159 | 1..159 | 809 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19074-PA | 159 | GK19074-PA | 1..159 | 1..159 | 825 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12955-PA | 159 | GE12955-PA | 1..159 | 1..159 | 826 | 99.4 | Plus |
Translation from 54 to 533
> RE62581.hyp MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQK GLPYKAYHGKTGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSK CREDFLRRVKENERLLKEAKEKGQWVSLKRQPEQPKKAHFVKKLEEPIAL APIPYEFIA*