Clone RE62690 Report

Search the DGRC for RE62690

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:626
Well:90
Vector:pFlc-1
Associated Gene/TranscriptCyp1-RA
Protein status:RE62690.pep: gold
Sequenced Size:1241

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Cyp1 2008-04-29 Release 5.5 accounting
Cyp1 2008-04-29 Picked prior to 5.5
Cyp1 2008-08-15 Release 5.9 accounting
Cyp1 2008-12-18 5.12 accounting

Clone Sequence Records

RE62690.complete Sequence

1241 bp assembled on 2007-07-18

GenBank Submission: BT031016

> RE62690.complete
AGTATCGTACATGCGGTCGCAAGCCATACACGATGGTCTCTTTTTGTGCA
ACTCTGATTCGACAGTTTCGGCACAGGTCGGCAGCGGCATTTCAGATTGC
GGAGTCCGCCATTTTAGCTAACAAATCTATAACCCTAGCTTCGTCAGCGT
GCAGTGTGAATAGGGGTCAGTTGCAGTTTGGAATTCAGATTGTTCGCGAA
TATTCGAAAGCGTCAAAGATGAGTACTTTGCCTAGGGTGTTTTTTGATAT
GACCGCCGACAACGAGCCCCTCGGTCGGATCGTCATGGAGCTGCGCTCCG
ATGTCGTGCCCAAGACCGCCGAGAACTTCCGCGCCTTGTGCACCGGCGAG
AAGGGATTCGGGTACAAGGGCTCCATTTTCCACCGCGTCATCCCCAACTT
CATGTGCCAGGGCGGCGACTTCACCAACCACAACGGCACTGGCGGCAAGT
CCATCTACGGCAACAAGTTCCCCGATGAGAACTTCGAGCTGAAGCACACC
GGCTCCGGCATCCTGTCGATGGCCAACGCTGGCGCCAACACGAACGGCTC
CCAGTTCTTTATTTGCACTGTGAAGACCGCCTGGTTGGACAACAAGCACG
TCGTCTTCGGCGAGGTCGTCGAGGGACTGGATGTGGTCAAGAAGATCGAA
TCTTATGGATCGCAGTCTGGCAAGACCTCCAAGAAGATCATTGTGGCTAA
CTCTGGTTCTCTTTAAGAAGGTGCGATGCAAAAGCAACAGCAACATTGCA
AGAAGAAAAATCTGTTAAGACGAAAACCATTTGCATTTTCTCCAAAACAT
TTTTTTTTACCAATTACTGTACTGTAATATTACGAGAAAAATACATAACA
AACCAACATATTTTCAATAGACATGTTGGGTTTCCTTTGGCCAATCAATT
GTATGTGGGGGCCAAAAGTGAATAGAATTAGTGCCCACCAATGTCAGAAA
GCGTTCAATTGGCTATATAATATGCATTAAATCTGTAACTTTAACATTTC
CATTCACAAAAAAAAAAACAAAGAAGAAAAACAATGAGACGACAAGAGTC
GAGAGGGGCTTAGAAAAATGTTTGATCTTTTGATGTTGGCTTACTTACTA
CTAATAATAGTATTAGTAATGCTGATTATCTAATTGCATATATATATATA
TATACCAACGTTCTACGCTATGTACCGGAATCGGAATTGTATTTTCGTCT
TAATAAATCTGAATAAACGGCAACCTAAAAAAAAAAAAAAA

RE62690.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp1-RA 1467 Cyp1-RA 210..1434 1..1225 6125 100 Plus
CG7768.a 697 CG7768.a 169..569 285..685 745 79 Plus
CG7768-RA 717 CG7768-RA 192..592 285..685 745 79 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16207380..16208327 1225..289 4290 97.4 Minus
chrX 22417052 chrX 16209803..16210092 290..1 1450 100 Minus
chr3L 24539361 chr3L 14208574..14208974 285..685 745 79.1 Plus
chr2R 21145070 chr2R 13433046..13433206 402..562 370 82 Plus
chr2R 21145070 chr2R 18531865..18532061 559..363 280 76.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16317673..16318609 1225..289 4685 100 Minus
X 23542271 X 16320079..16320368 290..1 1450 100 Minus
3L 28110227 3L 14218446..14218846 285..685 745 79.1 Plus
2R 25286936 2R 17545994..17546154 402..562 370 82 Plus
2R 25286936 2R 22645337..22645533 559..363 280 76.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16325771..16326707 1225..289 4685 100 Minus
X 23527363 X 16328177..16328466 290..1 1450 100 Minus
3L 28103327 3L 14211546..14211946 285..685 745 79 Plus
2R 25260384 2R 17547193..17547353 402..562 370 81.9 Plus
2R 25260384 2R 22646634..22646732 461..363 180 78.7 Minus
2R 25260384 2R 22646536..22646621 559..474 160 79 Minus
2R 25260384 2R 17547035..17547130 300..395 150 77 Plus
Blast to na_te.dros performed 2019-03-16 21:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1217..1259 827..867 111 76.7 Plus

RE62690.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:16:22 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16207379..16207729 875..1226 98 <- Minus
chrX 16207747..16208325 291..874 98 <- Minus
chrX 16209803..16210092 1..290 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:15 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 1..684 33..716 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:25:58 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 1..684 33..716 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:39 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 1..684 33..716 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:11:12 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 1..684 33..716 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:51 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 1..684 33..716 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:31:44 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 45..1269 1..1225 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:25:58 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 45..1269 1..1225 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:39 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 3..1227 1..1225 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:11:12 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 45..1269 1..1225 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:51 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp1-RA 3..1227 1..1225 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:22 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
X 16317672..16318607 291..1226 99 <- Minus
X 16320079..16320368 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:22 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
X 16317672..16318607 291..1226 99 <- Minus
X 16320079..16320368 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:22 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
X 16317672..16318607 291..1226 99 <- Minus
X 16320079..16320368 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:39 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16211705..16212640 291..1226 99 <- Minus
arm_X 16214112..16214401 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:58:11 Download gff for RE62690.complete
Subject Subject Range Query Range Percent Splice Strand
X 16325770..16326705 291..1226 99 <- Minus
X 16328177..16328466 1..290 100   Minus

RE62690.hyp Sequence

Translation from 2 to 715

> RE62690.hyp
YRTCGRKPYTMVSFCATLIRQFRHRSAAAFQIAESAILANKSITLASSAC
SVNRGQLQFGIQIVREYSKASKMSTLPRVFFDMTADNEPLGRIVMELRSD
VVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKS
IYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHV
VFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL*

RE62690.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp1-PA 227 CG9916-PA 1..227 11..237 1169 100 Plus
CG7768-PB 164 CG7768-PB 2..164 75..237 752 83.4 Plus
CG7768-PA 164 CG7768-PA 2..164 75..237 752 83.4 Plus
cyp33-PA 300 CG4886-PA 133..299 69..237 611 68.6 Plus
CG2852-PD 205 CG2852-PD 17..190 63..237 490 54 Plus

RE62690.pep Sequence

Translation from 32 to 715

> RE62690.pep
MVSFCATLIRQFRHRSAAAFQIAESAILANKSITLASSACSVNRGQLQFG
IQIVREYSKASKMSTLPRVFFDMTADNEPLGRIVMELRSDVVPKTAENFR
ALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDEN
FELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLD
VVKKIESYGSQSGKTSKKIIVANSGSL*

RE62690.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19040-PA 155 GF19040-PA 1..155 73..227 816 97.4 Plus
Dana\GF11346-PA 394 GF11346-PA 233..393 67..227 609 69.6 Plus
Dana\GF13003-PA 205 GF13003-PA 30..190 68..227 487 55.9 Plus
Dana\GF18880-PA 946 GF18880-PA 4..182 58..227 452 51.4 Plus
Dana\GF13802-PA 183 GF13802-PA 12..183 62..227 426 49.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19332-PA 227 GG19332-PA 1..227 1..227 1184 97.8 Plus
Dere\GG21795-PA 300 GG21795-PA 139..299 67..227 606 69.6 Plus
Dere\GG21776-PA 205 GG21776-PA 17..190 53..227 502 54 Plus
Dere\GG15678-PA 104 GG15678-PA 1..104 124..227 474 80.8 Plus
Dere\GG10814-PA 183 GG10814-PA 12..183 62..227 425 50 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17842-PA 165 GH17842-PA 1..165 63..227 832 91.5 Plus
Dgri\GH10794-PA 165 GH10794-PA 1..165 63..227 823 89.7 Plus
Dgri\GH14843-PA 164 GH14843-PA 2..164 65..227 703 76.7 Plus
Dgri\GH14842-PA 164 GH14842-PA 2..164 65..227 693 73 Plus
Dgri\GH20760-PA 304 GH20760-PA 143..303 67..227 608 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp1-PA 227 CG9916-PA 1..227 1..227 1169 100 Plus
CG7768-PB 164 CG7768-PB 2..164 65..227 752 83.4 Plus
CG7768-PA 164 CG7768-PA 2..164 65..227 752 83.4 Plus
cyp33-PA 300 CG4886-PA 133..299 59..227 611 68.6 Plus
CG2852-PD 205 CG2852-PD 17..190 53..227 490 54 Plus
CG2852-PA 205 CG2852-PA 17..190 53..227 490 54 Plus
Moca-cyp-PA 970 CG1866-PA 4..182 58..227 457 53.1 Plus
CG17266-PB 183 CG17266-PB 12..162 62..207 424 55.6 Plus
CG17266-PA 183 CG17266-PA 12..162 62..207 424 55.6 Plus
CG8336-PD 383 CG8336-PD 12..183 64..227 373 45.3 Plus
CG8336-PC 383 CG8336-PC 12..183 64..227 373 45.3 Plus
CG8336-PA 383 CG8336-PA 12..183 64..227 373 45.3 Plus
CG8336-PB 383 CG8336-PB 12..183 64..227 373 45.3 Plus
ninaA-PA 237 CG3966-PA 28..191 68..227 355 43.3 Plus
Cypl-PA 176 CG13892-PA 29..151 80..205 312 52 Plus
CG3511-PB 637 CG3511-PB 491..612 81..205 303 56.3 Plus
CG3511-PA 637 CG3511-PA 491..612 81..205 303 56.3 Plus
CG7747-PA 517 CG7747-PA 285..412 77..207 290 49.2 Plus
CG11777-PA 161 CG11777-PA 9..132 80..206 252 45.3 Plus
CG10907-PA 502 CG10907-PA 21..133 80..195 229 44.4 Plus
CG5071-PD 680 CG5071-PD 514..674 67..225 200 30.5 Plus
CG5071-PB 680 CG5071-PB 514..674 67..225 200 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21755-PA 165 GI21755-PA 1..165 63..227 839 93.9 Plus
Dmoj\GI13698-PA 165 GI13698-PA 1..165 63..227 740 80.6 Plus
Dmoj\GI13614-PA 164 GI13614-PA 2..164 65..227 714 79.8 Plus
Dmoj\GI13696-PA 166 GI13696-PA 2..164 65..227 713 77.9 Plus
Dmoj\GI14067-PA 160 GI14067-PA 6..133 47..182 616 84.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11464-PA 302 GL11464-PA 134..301 58..227 616 68.2 Plus
Dper\GL17482-PA 205 GL17482-PA 17..190 53..227 491 53.4 Plus
Dper\GL23654-PA 939 GL23654-PA 4..182 58..227 466 52 Plus
Dper\GL10991-PA 183 GL10991-PA 12..183 62..227 420 48.8 Plus
Dper\GL12709-PA 384 GL12709-PA 12..183 64..227 386 48.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Cyp1-PA 226 GA22120-PA 1..226 1..227 1079 89.9 Plus
Dpse\GA18502-PA 302 GA18502-PA 134..301 58..227 616 68.2 Plus
Dpse\GA15486-PA 205 GA15486-PA 17..190 53..227 491 53.4 Plus
Dpse\GA15038-PA 930 GA15038-PA 4..182 58..227 473 52.5 Plus
Dpse\GA14426-PA 183 GA14426-PA 12..183 62..227 420 48.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13410-PA 227 GM13410-PA 1..227 1..227 1199 99.1 Plus
Dsec\GM25460-PA 164 GM25460-PA 2..164 65..227 752 81.6 Plus
Dsec\GM21798-PA 301 GM21798-PA 140..300 67..227 611 69.6 Plus
Dsec\GM15627-PA 205 GM15627-PA 22..190 58..227 497 55 Plus
Dsec\GM16379-PA 963 GM16379-PA 10..182 64..227 460 54.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20227-PA 155 GD20227-PA 1..155 73..227 797 96.8 Plus
Dsim\GD11288-PA 301 GD11288-PA 140..300 67..227 611 69.6 Plus
Dsim\GD25116-PA 203 GD25116-PA 20..188 58..227 497 55 Plus
Dsim\GD21371-PA 1003 GD21371-PA 4..182 58..227 463 53.1 Plus
Dsim\GD10314-PA 183 GD10314-PA 12..183 62..227 425 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19133-PA 223 GJ19133-PA 1..223 1..227 984 84.6 Plus
Dvir\GJ14038-PA 164 GJ14038-PA 2..164 65..227 719 78.5 Plus
Dvir\GJ13951-PA 164 GJ13951-PA 2..164 65..227 716 79.1 Plus
Dvir\GJ14037-PA 164 GJ14037-PA 2..164 65..227 715 77.9 Plus
Dvir\GJ20579-PA 302 GJ20579-PA 141..301 67..227 622 70.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16511-PA 165 GK16511-PA 1..165 63..227 847 95.2 Plus
Dwil\GK14585-PA 165 GK14585-PA 1..165 63..227 790 85.5 Plus
Dwil\GK21428-PA 204 GK21428-PA 16..189 53..227 493 54.5 Plus
Dwil\GK12144-PA 847 GK12144-PA 4..176 58..227 448 52.6 Plus
Dwil\GK23148-PA 183 GK23148-PA 12..183 62..227 427 50.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Cyp1-PA 227 GE15979-PA 1..227 1..227 1184 97.8 Plus
Dyak\GE22008-PA 180 GE22008-PA 18..180 65..227 756 82.2 Plus
Dyak\GE11871-PA 300 GE11871-PA 139..299 67..227 607 69.6 Plus
Dyak\GE11851-PA 205 GE11851-PA 17..190 53..227 502 53.4 Plus
Dyak\GE24621-PA 183 GE24621-PA 14..183 64..227 424 50.6 Plus