Clone RE62692 Report

Search the DGRC for RE62692

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:626
Well:92
Vector:pFlc-1
Associated Gene/TranscriptCG4670-RA
Protein status:RE62692.pep: gold
Preliminary Size:2187
Sequenced Size:2382

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4670 2002-01-01 Sim4 clustering to Release 2
CG4670 2003-01-01 Sim4 clustering to Release 3
CG4670 2003-02-21 Blastp of sequenced clone
CG4670 2008-04-29 Release 5.5 accounting
CG4670 2008-08-15 Release 5.9 accounting
CG4670 2008-12-18 5.12 accounting

Clone Sequence Records

RE62692.complete Sequence

2382 bp (2382 high quality bases) assembled on 2003-02-21

GenBank Submission: BT004854

> RE62692.complete
AGTTAATCAAACCACTTGCGACCGTAAAACATTCCAAATGCTTCGGTGAA
GTTAAATCTTATCGCAGCAGAGCAGTCGCGTTCCACATCGCATTCCGTAC
GAATCGCAGCCGCAACCGATCCCGCAAATTGGGTAGATCCGCAAAATGTC
GGCGACGCACCTGGTGATTCTGGCCGTCGCTCTGCTGGTGGACATCGCAT
CCGCGGGCGTTCCCCTTCCGCGATACGAGGCGCTCCTCAAGCAGCAGTCC
CCTCCATCGGATCCCACACTGGGTCTCTACGACGACGGGGATAAGGTTAT
CCGCCTGTCGGTCGACAACTTCAATGCTACCGTCCTGGACCAGAATCGCG
GAGCATTAGTCGAGTTCTACAACACTTACTGCGGCCACTGTCGCAGATTC
GCACCCACGTACAAGTCGGTAGCGGAGCACCTGTTGCCCTGGTCCGAGGT
GCTCATCGTGGCGGCCATCGATTGCGCCGCCGAGGAGAACAATGGCATCT
GCCGCAACTACGAGGTGATGGGCTATCCAACGCTACGTTATCTGGGCCCC
GGTTTCCAGCCGGGTCCTCAGCATTACGGGCAGAGCCTGCATACGCAGGA
TAAAAACGAAATCCGCGAAATACTAGCGGGTATGGTGGCCGCAGAGAACC
TGACCAGCAGCCACAACAATTCCTACTGGCCAAACTTTCACTACTTAACG
GAGAACGATTCAGCCAGCAGTTTGTTCGAAGGTCTCAGCAGCGCCACGGA
GTACGTGGCAGTGGTTCACGAACCGGAGAACACCACTCTAGGCGTCGAGG
TGGCTCTGTTCATGACCCAGTGGCCAGCGGTGAGGGTCCGGCGCGTCATC
GATCCAGCCGTGGCCGCCAAATTCAAGATTGATCCGACCAATCTGCCCCT
CAGCTTGGTGGATCGCAAAGGTGAAATTACGGCGTACGCGCCGGAATCTA
CCAATGGTGAATCGTATGCCAAGAAGCTGTGGGATGTACTGGGTAAGAAG
AATATCACTCCCAGGCCAGTGAAGGTGCACCAACCATCGGCAACGCCGGC
GTCCAAGATTAAGGGACAAAACGAATTGATCGATGAAGTGCACCGGAACA
AGCACTTCGTCTACCAGGCGGATCTCGAGCAGGCCATACGCACGGTGCTG
CACAACGAGGTGTCCAAGGTGGGCGAGATCAGTGGCGAGAAACTGCTCGC
ACTGCAGCGATTCCTAGCTGTGCTGCAGCGCTACAATCCGCTCGGCGCCA
ATGGCCACCAGCTGGTGTCCAAGCTGAAGGACTACGTGGTACAGTTCAAC
GATCAACGACTGACGGGTAGCCAGTTCGAGGAGGAGCTGAAGCGCCTAGA
GGCTCATCTCTCGCCCGTCTACTCATCCAACCACTTTGTGGGTTGCGTTG
GATCCAGTCCCCGCCTGCGCGGCTTCAGTTGCTCCCTGTGGACACTCTTC
CACTTCATGACCGTGCAGGCGGCCAACAATGAGGAGACCCAGGATCCGCT
GGAAGTCTTGCAGGCCATGCACGGGTACATCAAGAACTTCTTCGGCTGCA
CCGAGTGCTCCGAGCACTTTCAGGCAATGGCATCGAGGCGAAAAATCTGG
AGTGTGCCGAACAAAGAGGAAGCTGTTCTGTGGCTTTGGGCTGCGCACAA
CGAGGTGAACCAGCGCCTGGCAGGCGATGCCACCGAGGATCCAGAGTTCC
CCAAGAAGCAATTCCCAGCGCCGGAAAGCTGCAACGAATGCTACCGCACG
CCCGTCTCCAAGTCGGAGAACTTGGAGATCGAATGGAACAAGGACGCCGT
GCTGGGCTTCCTCAAGAACATACACAATCCGCAGTTCGTTAGCCGGTACG
GTGTGCAGCGGGAGGAGCTGCTGCATCCCACGGCGGACAAAATGCGGCAG
AAGCGACAGATCTCAAGTGTCTTCACCGACATGGATATGCGGATGGGCAT
GCTGCTGTACGCCTTCTGCATTGTGATGATGGTGTTGGCATTTAAATTGT
TCGCCTTCAAGGGATACCGCAAGAAGCCCTATGGCCACGATCTCCTGGGC
AAGGTGTAGGTTAATCCGCAGGAAAGCTTTCACATATTCTAAACAACAAA
GAAAAGACACCGAACACCGAGAAACGGAATTTAACACGCCACCTCATTGC
ATGATTTGTATTCGTGGCACCTAGAGTTATGATTAAGTTAAAAGTGTGTA
TATATATATATATATTGTATGAACGAACAGTCCTCTTCCAGTTGTAGTCC
CTAACCTAATCGCTTTTTACCACGACGATGCACCTGATTGCTTTATTCTT
AGGCATGCAAATGTGATTTTTCCCTCCAGAAGTGACAGTTTGAATAAAAA
CGATCAATGCTAGACGAAAAAAAAAAAAAAAA

RE62692.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4670-RA 2470 CG4670-RA 64..2431 1..2368 11840 100 Plus
CG4670.a 2661 CG4670.a 255..2622 1..2368 11840 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9120825..9122398 1574..1 7870 100 Minus
chr2R 21145070 chr2R 9119114..9119909 2366..1571 3965 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13233469..13235042 1574..1 7870 100 Minus
2R 25286936 2R 13231756..13232553 2368..1571 3990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13234668..13236241 1574..1 7870 100 Minus
2R 25260384 2R 13232955..13233752 2368..1571 3990 100 Minus
Blast to na_te.dros performed 2019-03-16 14:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2481..2551 1311..1238 119 66.2 Minus
baggins 5453 baggins BAGGINS 5453bp 5166..5219 1946..1892 119 70.9 Minus

RE62692.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:05:46 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9119114..9119906 1574..2366 99 <- Minus
chr2R 9120826..9122398 1..1573 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:16 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..1914 146..2059 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:26 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..1914 146..2059 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:25:50 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..1914 146..2059 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:50 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..1914 146..2059 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:34 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..1914 146..2059 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:10 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..2366 1..2366 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:26 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..2366 1..2366 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:25:50 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 5..2370 1..2366 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:50 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 1..2366 1..2366 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:34 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
CG4670-RA 5..2370 1..2366 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:46 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13231758..13232550 1574..2366 100 <- Minus
2R 13233470..13235042 1..1573 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:46 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13231758..13232550 1574..2366 100 <- Minus
2R 13233470..13235042 1..1573 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:46 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13231758..13232550 1574..2366 100 <- Minus
2R 13233470..13235042 1..1573 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:25:50 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9120975..9122547 1..1573 100   Minus
arm_2R 9119263..9120055 1574..2366 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:15 Download gff for RE62692.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13234669..13236241 1..1573 100   Minus
2R 13232957..13233749 1574..2366 100 <- Minus

RE62692.pep Sequence

Translation from 145 to 2058

> RE62692.pep
MSATHLVILAVALLVDIASAGVPLPRYEALLKQQSPPSDPTLGLYDDGDK
VIRLSVDNFNATVLDQNRGALVEFYNTYCGHCRRFAPTYKSVAEHLLPWS
EVLIVAAIDCAAEENNGICRNYEVMGYPTLRYLGPGFQPGPQHYGQSLHT
QDKNEIREILAGMVAAENLTSSHNNSYWPNFHYLTENDSASSLFEGLSSA
TEYVAVVHEPENTTLGVEVALFMTQWPAVRVRRVIDPAVAAKFKIDPTNL
PLSLVDRKGEITAYAPESTNGESYAKKLWDVLGKKNITPRPVKVHQPSAT
PASKIKGQNELIDEVHRNKHFVYQADLEQAIRTVLHNEVSKVGEISGEKL
LALQRFLAVLQRYNPLGANGHQLVSKLKDYVVQFNDQRLTGSQFEEELKR
LEAHLSPVYSSNHFVGCVGSSPRLRGFSCSLWTLFHFMTVQAANNEETQD
PLEVLQAMHGYIKNFFGCTECSEHFQAMASRRKIWSVPNKEEAVLWLWAA
HNEVNQRLAGDATEDPEFPKKQFPAPESCNECYRTPVSKSENLEIEWNKD
AVLGFLKNIHNPQFVSRYGVQREELLHPTADKMRQKRQISSVFTDMDMRM
GMLLYAFCIVMMVLAFKLFAFKGYRKKPYGHDLLGKV*

RE62692.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11199-PA 636 GF11199-PA 22..636 20..637 2607 76.1 Plus
Dana\GF18057-PA 540 GF18057-PA 25..533 43..570 924 38.1 Plus
Dana\GF18056-PA 776 GF18056-PA 297..766 82..570 771 34 Plus
Dana\GF18055-PA 561 GF18055-PA 73..554 69..570 615 29.5 Plus
Dana\GF18056-PA 776 GF18056-PA 8..272 310..581 441 35.3 Plus
Dana\GF18058-PA 778 GF18058-PA 378..777 169..570 376 26.6 Plus
Dana\GF18058-PA 778 GF18058-PA 28..374 40..342 243 25.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22509-PA 635 GG22509-PA 1..635 1..637 3110 89.2 Plus
Dere\GG11096-PA 553 GG11096-PA 34..546 43..570 929 36.5 Plus
Dere\GG11095-PA 564 GG11095-PA 48..544 57..566 838 34.5 Plus
Dere\GG11219-PA 560 GG11219-PA 23..549 44..570 644 29.3 Plus
Dere\GG22623-PA 489 GG22623-PA 24..102 51..131 156 40.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20280-PA 643 GH20280-PA 10..643 7..637 2270 65.5 Plus
Dgri\GH20920-PA 559 GH20920-PA 31..552 44..570 894 36.5 Plus
Dgri\GH16892-PA 493 GH16892-PA 25..120 51..152 159 35.3 Plus
Dgri\GH20405-PA 489 GH20405-PA 24..102 51..131 155 42 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Qsox1-PB 637 CG4670-PB 1..637 1..637 3361 100 Plus
Qsox1-PA 637 CG4670-PA 1..637 1..637 3361 100 Plus
Qsox2-PA 552 CG17843-PA 35..545 44..570 865 35.8 Plus
Qsox3-PA 562 CG6690-PA 25..540 32..566 765 32.2 Plus
Qsox4-PA 561 CG31413-PA 27..553 44..570 625 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19451-PA 646 GI19451-PA 11..646 7..637 2390 67.4 Plus
Dmoj\GI10722-PA 545 GI10722-PA 23..538 44..570 926 36.7 Plus
Dmoj\GI12238-PA 493 GI12238-PA 25..107 51..136 165 38.4 Plus
Dmoj\GI15325-PA 406 GI15325-PA 135..249 14..136 160 33.3 Plus
Dmoj\GI19593-PA 488 GI19593-PA 23..101 51..131 157 40.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10907-PA 638 GL10907-PA 1..638 1..637 2629 74.1 Plus
Dper\GL20935-PA 542 GL20935-PA 5..538 24..569 985 38.6 Plus
Dper\GL23804-PA 554 GL23804-PA 22..547 29..570 835 35.5 Plus
Dper\GL25779-PA 493 GL25779-PA 26..121 51..152 160 35.3 Plus
Dper\GL15145-PA 387 GL15145-PA 224..353 17..130 154 26.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18343-PA 638 GA18343-PA 1..638 1..637 2629 74.1 Plus
Dpse\GA28634-PA 548 GA28634-PA 21..544 29..569 991 38.9 Plus
Dpse\GA27058-PA 559 GA27058-PA 21..552 29..570 936 37.7 Plus
Dpse\GA20009-PA 493 GA20009-PA 26..121 51..152 160 35.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20295-PA 636 GM20295-PA 1..636 1..637 3340 96.5 Plus
Dsec\GM26387-PA 564 GM26387-PA 35..541 44..566 796 32.6 Plus
Dsec\GM26521-PA 561 GM26521-PA 27..553 44..570 654 29.6 Plus
Dsec\GM26712-PA 561 GM26712-PA 27..553 44..570 654 29.6 Plus
Dsec\GM26388-PA 174 GM26388-PA 34..169 43..184 239 33.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25776-PA 636 GD25776-PA 1..636 1..637 3357 97.2 Plus
Dsim\GD20911-PA 552 GD20911-PA 34..545 43..570 900 35.9 Plus
Dsim\GD20910-PA 564 GD20910-PA 35..541 44..566 809 33 Plus
Dsim\GD21029-PA 561 GD21029-PA 27..553 44..570 658 29.6 Plus
Dsim\ERp60-PA 489 GD25877-PA 24..102 51..131 157 40.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21201-PA 646 GJ21201-PA 11..646 6..637 2393 69.2 Plus
Dvir\GJ23137-PA 548 GJ23137-PA 21..541 43..570 957 37.8 Plus
Dvir\GJ11469-PA 493 GJ11469-PA 25..107 51..136 164 38.4 Plus
Dvir\GJ17455-PA 438 GJ17455-PA 23..120 44..146 162 34 Plus
Dvir\GJ18390-PA 489 GJ18390-PA 24..102 51..131 155 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14087-PA 645 GK14087-PA 6..645 9..637 2325 66.5 Plus
Dwil\GK14235-PA 232 GK14235-PA 7..213 34..246 291 30.5 Plus
Dwil\GK20490-PA 497 GK20490-PA 27..122 51..152 161 34.3 Plus
Dwil\GK25489-PA 415 GK25489-PA 153..249 39..136 159 35.3 Plus
Dwil\GK25489-PA 415 GK25489-PA 312..381 59..130 154 38.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13379-PA 636 GE13379-PA 1..636 1..637 3265 93.4 Plus
Dyak\GE10256-PA 554 GE10256-PA 35..547 43..570 886 35.7 Plus
Dyak\GE10255-PA 558 GE10255-PA 35..546 44..570 865 34.6 Plus
Dyak\GE10385-PA 571 GE10385-PA 23..549 44..570 638 28.9 Plus
Dyak\GE19977-PA 496 GE19977-PA 29..124 51..152 157 34.3 Plus

RE62692.hyp Sequence

Translation from 145 to 2058

> RE62692.hyp
MSATHLVILAVALLVDIASAGVPLPRYEALLKQQSPPSDPTLGLYDDGDK
VIRLSVDNFNATVLDQNRGALVEFYNTYCGHCRRFAPTYKSVAEHLLPWS
EVLIVAAIDCAAEENNGICRNYEVMGYPTLRYLGPGFQPGPQHYGQSLHT
QDKNEIREILAGMVAAENLTSSHNNSYWPNFHYLTENDSASSLFEGLSSA
TEYVAVVHEPENTTLGVEVALFMTQWPAVRVRRVIDPAVAAKFKIDPTNL
PLSLVDRKGEITAYAPESTNGESYAKKLWDVLGKKNITPRPVKVHQPSAT
PASKIKGQNELIDEVHRNKHFVYQADLEQAIRTVLHNEVSKVGEISGEKL
LALQRFLAVLQRYNPLGANGHQLVSKLKDYVVQFNDQRLTGSQFEEELKR
LEAHLSPVYSSNHFVGCVGSSPRLRGFSCSLWTLFHFMTVQAANNEETQD
PLEVLQAMHGYIKNFFGCTECSEHFQAMASRRKIWSVPNKEEAVLWLWAA
HNEVNQRLAGDATEDPEFPKKQFPAPESCNECYRTPVSKSENLEIEWNKD
AVLGFLKNIHNPQFVSRYGVQREELLHPTADKMRQKRQISSVFTDMDMRM
GMLLYAFCIVMMVLAFKLFAFKGYRKKPYGHDLLGKV*

RE62692.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4670-PB 637 CG4670-PB 1..637 1..637 3361 100 Plus
CG4670-PA 637 CG4670-PA 1..637 1..637 3361 100 Plus
CG17843-PA 552 CG17843-PA 35..545 44..570 865 35.8 Plus
CG6690-PA 562 CG6690-PA 25..540 32..566 765 32.2 Plus
CG31413-PA 561 CG31413-PA 27..553 44..570 625 28.2 Plus