Clone RE62785 Report

Search the DGRC for RE62785

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:627
Well:85
Vector:pFlc-1
Associated Gene/TranscriptCG12134-RA
Protein status:RE62785.pep: gold
Preliminary Size:1422
Sequenced Size:1532

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12134 2001-12-14 Blastp of sequenced clone
CG12134 2002-01-01 Sim4 clustering to Release 2
CG12134 2008-04-29 Release 5.5 accounting
CG12134 2008-08-15 Release 5.9 accounting
CG12134 2008-12-18 5.12 accounting

Clone Sequence Records

RE62785.complete Sequence

1532 bp (1532 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071560

> RE62785.complete
AGGGGTGGTGTGTGACTTGGCTTCAAAATCATATTATTGAAGTAGTTAAA
AATAAATTCAGTTGTCGAATAAGTGGATTTCGTCATAAAAGAAAGAGTGC
TGACGCATTTGAAGTGCACTCTTATCCCTTTCAACTCGTCTATTAAGTAT
TCAATGTGTCTTCAGCCCAAGTTAGCTTAAATCTAGCTGAATAGTCAGCA
CTGTCGTCATTTAATGCACGTGCGGCAAATTAAAAATAGACAAGAATGAG
CGACTTTAACAAATATTGCGAAGAAGCTGCGAGGGAAGCGCTTCCGGACT
CGGAAGACGAGGAAGACATCGGCGATGAGGACACTTGTAGCGCACAGGAT
CTTGCCGCCGAATTCCAGCTGAAGTACAAGCCGCAGGACGAAGTCAGTGT
GTCCTTGCAGCGTGAATATGTTCTTAGCCTGGCCGCAGATCAAGGATTCT
CACGGATGGCCGCCGGACTGTCCAATTCAGCAGTGCATATCTATAATTTG
GATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTGCCGCCCACAGA
TTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCTCGACGAAGGAC
CACACAACATCCTGGTCGGCACCACCGATGGCTACGTGCGCCTCTACGAT
CTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACGCAGCACCCTAA
TGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAGAAACGCCAACG
GTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCAACGCGTTCCTC
GTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTCTACTTCGAAAG
CCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCAGAATCCAGACC
TTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGTTCGATGTGAAG
GAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAACACGGAGAGCAG
TGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAAGGACATCATAT
CCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGTGCGAGGAGGGC
GACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCGGCAATAAGGAG
AAAAAAAGCCGCAAACTTCAACCTGATAAATGCCCACAATCAGGAAGACG
GAGGAGTCTTTCTGTTGGCGGGCACCAACTTCAACAAGGGCGAGATCCTG
CGCTCCGTTAGCGTTACCTCGAAGAACAGCCTCCAGCCATTGGCCAATTT
CCAGGGAAACAAGCAGATCGTCAGAGATAGTCTTTTCGATTCAAAGAGAA
GTTTACTTTTTACAGGCGGAGAATCCGGCATTGTTACGGTTTGGGCACAG
GACGCAAGTGGAACGGCGTTCAGCAGTGAAAAACTGAAGGCCAGGAAGGA
GAAGAAATCACGCAAGCAAGCGCCATATTAAATGTGTATTTATGTTTTAA
ATAAAGGTTTTCTAAATAAAAAAAAAAAAAAA

RE62785.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RA 1533 CG12134-RA 9..1526 1..1518 7575 99.9 Plus
CG12134.b 1501 CG12134.b 1..1489 27..1518 7390 99.7 Plus
CG12134-RB 1588 CG12134-RB 330..1576 272..1518 6235 100 Plus
CG12134-RB 1588 CG12134-RB 4..276 1..273 1350 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5858992..5859960 272..1240 4770 99.5 Plus
chr2R 21145070 chr2R 5860017..5860294 1240..1517 1375 99.6 Plus
chr2R 21145070 chr2R 5858667..5858938 1..273 1285 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971475..9972443 272..1240 4845 100 Plus
2R 25286936 2R 9972500..9972778 1240..1518 1395 100 Plus
2R 25286936 2R 9971149..9971421 1..273 1350 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9972674..9973642 272..1240 4845 100 Plus
2R 25260384 2R 9973699..9973977 1240..1518 1395 100 Plus
2R 25260384 2R 9972348..9972620 1..273 1350 99.6 Plus
Blast to na_te.dros performed on 2019-03-15 22:50:41 has no hits.

RE62785.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:51:52 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5860018..5860294 1241..1517 99   Plus
chr2R 5858667..5858938 1..273 98 -> Plus
chr2R 5858994..5859960 274..1240 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:21 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1236 246..1481 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:07:42 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1236 246..1481 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:29 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1236 246..1481 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:02 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1236 246..1481 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:52 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1236 246..1481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:36:23 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1517 1..1517 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:07:42 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1517 1..1517 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:29 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 7..1523 1..1517 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:02 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 1..1517 1..1517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:52 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 7..1523 1..1517 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:51:52 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9972501..9972777 1241..1517 100   Plus
2R 9971149..9971421 1..273 99 -> Plus
2R 9971477..9972443 274..1240 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:51:52 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9972501..9972777 1241..1517 100   Plus
2R 9971149..9971421 1..273 99 -> Plus
2R 9971477..9972443 274..1240 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:51:52 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9972501..9972777 1241..1517 100   Plus
2R 9971149..9971421 1..273 99 -> Plus
2R 9971477..9972443 274..1240 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:29 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5858654..5858926 1..273 99 -> Plus
arm_2R 5858982..5859948 274..1240 100 -> Plus
arm_2R 5860006..5860282 1241..1517 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:08:49 Download gff for RE62785.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9972348..9972620 1..273 99 -> Plus
2R 9972676..9973642 274..1240 100 -> Plus
2R 9973700..9973976 1241..1517 100   Plus

RE62785.pep Sequence

Translation from 245 to 1480

> RE62785.pep
MSDFNKYCEEAAREALPDSEDEEDIGDEDTCSAQDLAAEFQLKYKPQDEV
SVSLQREYVLSLAADQGFSRMAAGLSNSAVHIYNLDSGAGKLENFSYLPP
TDSPQSVSICGVRFLDEGPHNILVGTTDGYVRLYDLRLRGEQARFKYTQH
PNVPPVPKSLSCFDRNANGRIICCGTEQFHSNAFLVFFDVRERQQMGVYF
ESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDEDEALLNTFNTE
SSVARLAWHRNVYDKDIISCVTTTGDFKSYECEEGDEVASFERPDVTAAI
RRKKAANFNLINAHNQEDGGVFLLAGTNFNKGEILRSVSVTSKNSLQPLA
NFQGNKQIVRDSLFDSKRSLLFTGGESGIVTVWAQDASGTAFSSEKLKAR
KEKKSRKQAPY*

RE62785.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13567-PA 412 GF13567-PA 1..412 1..411 1477 70.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24125-PA 411 GG24125-PA 1..411 1..411 2009 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20350-PA 252 GH20350-PA 1..252 160..411 930 64.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 411 CG12134-PA 1..411 1..411 2136 100 Plus
CG12134-PB 341 CG12134-PB 1..341 71..411 1778 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14544-PA 411 GI14544-PA 4..411 5..411 1084 52 Plus
Dmoj\GI20019-PA 411 GI20019-PA 4..411 5..411 1084 52 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16766-PA 411 GL16766-PA 1..411 1..411 1503 67.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11428-PA 411 GA11428-PA 1..411 1..411 1494 67.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11121-PA 411 GM11121-PA 1..411 1..411 2153 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10705-PA 411 GD10705-PA 1..411 1..411 2152 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21267-PA 417 GJ21267-PA 8..417 7..411 1349 63.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21663-PA 410 GK21663-PA 3..410 2..411 1294 59.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19321-PA 411 GE19321-PA 1..411 1..411 1998 92.9 Plus

RE62785.hyp Sequence

Translation from 245 to 1480

> RE62785.hyp
MSDFNKYCEEAAREALPDSEDEEDIGDEDTCSAQDLAAEFQLKYKPQDEV
SVSLQREYVLSLAADQGFSRMAAGLSNSAVHIYNLDSGAGKLENFSYLPP
TDSPQSVSICGVRFLDEGPHNILVGTTDGYVRLYDLRLRGEQARFKYTQH
PNVPPVPKSLSCFDRNANGRIICCGTEQFHSNAFLVFFDVRERQQMGVYF
ESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDEDEALLNTFNTE
SSVARLAWHRNVYDKDIISCVTTTGDFKSYECEEGDEVASFERPDVTAAI
RRKKAANFNLINAHNQEDGGVFLLAGTNFNKGEILRSVSVTSKNSLQPLA
NFQGNKQIVRDSLFDSKRSLLFTGGESGIVTVWAQDASGTAFSSEKLKAR
KEKKSRKQAPY*

RE62785.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PA 411 CG12134-PA 1..411 1..411 2136 100 Plus
CG12134-PB 341 CG12134-PB 1..341 71..411 1778 100 Plus