Clone RE62833 Report

Search the DGRC for RE62833

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:628
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG6638-RA
Protein status:RE62833.pep: gold
Preliminary Size:1316
Sequenced Size:1527

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6638 2001-12-14 Blastp of sequenced clone
CG6638 2002-01-01 Sim4 clustering to Release 2
CG6638 2003-01-01 Sim4 clustering to Release 3
CG6638 2008-04-29 Release 5.5 accounting
CG6638 2008-08-15 Release 5.9 accounting
CG6638 2008-12-18 5.12 accounting

Clone Sequence Records

RE62833.complete Sequence

1527 bp (1527 high quality bases) assembled on 2001-12-14

GenBank Submission: AY089640

> RE62833.complete
AGTGGATTCCGCAGTAGCGAGTGCTAACAGCTGATCGCAATTAGATAATA
GTATAGAATAGTAAACCCCAAAATCATCATGGCTCTGAGATTTGTGGCCC
AGTCATGCAGATCCTTGCTGCAACGTGGCGATCGTCCTTTGTCTTGGACC
CGTACCCTCGCCCATTATCCCGTCAACGATGCGATGTTCGGTCTGGATGA
GGATCGCCAAAAGCTGCGGGAAGTCGCCTTCAATTTCTTTCAGAAGGAAT
TGGCGCCTCTGGCCAAGGAAATCGACAAATTGGATAATTTCAAGGACATG
CGCCCCTTCTGGAAGAAACTAGGTGCTCTTGGCTTTTTGGGCATCACGGC
GGAGCCAGATTTTGGTGGCACTGGGGGCAGCTATTTGGACCACTGCATCA
TCATGGAGGAATTCTCCCGTGCTGCTGGTGGCGTGGCCTTGTCGTACGGA
GCACACTCCAATCTGTGCATCAATCAGCTGACAAAGAACGGCACCCCCGA
GCAGAAGGAGAAGTACCTTCCCAAGCTGTGCAGTGGTGAGCATGTTGGAG
GTCTGGCCATGTCCGAACCGGGCGCTGGATCCGATGTCGTATCCATGAAG
CTGCGTGCGGAGCGCAAGGGAGACTACTATGTCCTGAATGGATCAAAATT
CTGGATCACAAATGGATCTGATGCGGATACCTTGATAGTCTATGCCAAGA
CAGGAGGCAGCGGTGTTCCGGACAAGCACGGCATTACCGCTTTCATAGTC
GAAACCGCCTGGGAAGGATTCAGTGTGGCCCAAAAGCTGGACAAGTTGGG
CATGCGAGGCAGCAGTACCTGTGAGCTGGTCTTCCAGGATCTGAAGGTGC
CGGCCAAGAATATTCTGGGCCAGGAGAACAGGGGCGTCTATGTGCTCATG
TCGGGATTGGACTTTGAACGACTAGTGCTGGCCGCCGGACCCGTGGGTCT
GATGCAGGCCGCTTGCGACGTGGCTTTCGACTATGCCCACCAGCGCAAGC
AGATGAACAAGTTAATTGGAGAATTCCAGTTGCTGCAAGGAAAGATGGCC
GATATGTACACCACACTGAGTGCGTGCAGGAGCTATTTGTACACGGTGGC
CAGATCCTGTGACGCCGGCAATCGCAGTCCCAAAGATTGTGCTGGCGTTA
TTCTCTACACCGCCGAGAAAGCCACCAAGGTGGCGCTCGATGCCATTCAG
ATCCTAGGTGGCAATGGCTACATTAACGAGAATCCCACTGGTCGCATCCT
GCGAGATGCTAAACTATACGAGATTGGCGCAGGAACCTCCGAGATCAGAC
GCTGGCTGATTGGTCGCCAGCTCAACCAGGAGTACAAGTGAAGAGAGAGC
GCCATCTCTTTTTCCAATGTGGCAATAACGTGGACCAACTCTACTACCTG
ACAGACTAAATGTTGCATTTATTTTTTGAAGATTTGTAAAATCTGTATGT
TTTATCAATGTCTATATGTATATGTATGTGCCTTAATAAAAGAAGTAAAA
CTTTATATGCTAAAAAAAAAAAAAAAA

RE62833.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6638-RA 1760 CG6638-RA 21..1535 1..1515 7545 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8566430..8567520 1509..419 5410 99.7 Minus
chr3L 24539361 chr3L 8567803..8568096 294..1 1425 99 Minus
chr3L 24539361 chr3L 8567622..8567747 419..294 630 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8574401..8575497 1515..419 5470 99.9 Minus
3L 28110227 3L 8575780..8576073 294..1 1455 99.7 Minus
3L 28110227 3L 8575599..8575724 419..294 630 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8567501..8568597 1515..419 5470 99.9 Minus
3L 28103327 3L 8568880..8569173 294..1 1455 99.6 Minus
3L 28103327 3L 8568699..8568824 419..294 630 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:55:18 has no hits.

RE62833.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:56:05 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8566438..8567519 420..1501 99 <- Minus
chr3L 8567622..8567747 294..419 100 <- Minus
chr3L 8567804..8568096 1..293 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:22 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1263 79..1341 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:01 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1263 79..1341 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:04 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1263 79..1341 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:36 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1263 79..1341 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:08 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1263 79..1341 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:15 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1510 1..1511 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:01 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1509 1..1509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:04 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 6..1514 1..1509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:36 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 1..1510 1..1511 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:08 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
CG6638-RA 6..1514 1..1509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:05 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8575599..8575724 294..419 100 <- Minus
3L 8574405..8575496 420..1511 99 <- Minus
3L 8575781..8576073 1..293 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:05 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8575599..8575724 294..419 100 <- Minus
3L 8574405..8575496 420..1511 99 <- Minus
3L 8575781..8576073 1..293 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:56:05 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8575599..8575724 294..419 100 <- Minus
3L 8574405..8575496 420..1511 99 <- Minus
3L 8575781..8576073 1..293 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:04 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8567505..8568596 420..1511 99 <- Minus
arm_3L 8568699..8568824 294..419 100 <- Minus
arm_3L 8568881..8569173 1..293 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:53 Download gff for RE62833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8567505..8568596 420..1511 99 <- Minus
3L 8568699..8568824 294..419 100 <- Minus
3L 8568881..8569173 1..293 99   Minus

RE62833.pep Sequence

Translation from 78 to 1340

> RE62833.pep
MALRFVAQSCRSLLQRGDRPLSWTRTLAHYPVNDAMFGLDEDRQKLREVA
FNFFQKELAPLAKEIDKLDNFKDMRPFWKKLGALGFLGITAEPDFGGTGG
SYLDHCIIMEEFSRAAGGVALSYGAHSNLCINQLTKNGTPEQKEKYLPKL
CSGEHVGGLAMSEPGAGSDVVSMKLRAERKGDYYVLNGSKFWITNGSDAD
TLIVYAKTGGSGVPDKHGITAFIVETAWEGFSVAQKLDKLGMRGSSTCEL
VFQDLKVPAKNILGQENRGVYVLMSGLDFERLVLAAGPVGLMQAACDVAF
DYAHQRKQMNKLIGEFQLLQGKMADMYTTLSACRSYLYTVARSCDAGNRS
PKDCAGVILYTAEKATKVALDAIQILGGNGYINENPTGRILRDAKLYEIG
AGTSEIRRWLIGRQLNQEYK*

RE62833.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10158-PA 419 GF10158-PA 1..419 1..420 2152 96.2 Plus
Dana\GF17623-PA 405 GF17623-PA 7..403 19..419 620 36.1 Plus
Dana\GF17739-PA 418 GF17739-PA 40..414 39..418 589 36.5 Plus
Dana\GF10656-PA 420 GF10656-PA 31..416 33..420 582 35.7 Plus
Dana\GF10801-PA 415 GF10801-PA 38..413 39..419 533 33.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15072-PA 420 GG15072-PA 1..420 1..420 2228 99 Plus
Dere\Arc42-PA 405 GG23560-PA 23..403 35..419 626 37.6 Plus
Dere\GG14445-PA 419 GG14445-PA 25..416 27..420 587 35.9 Plus
Dere\GG17152-PA 415 GG17152-PA 34..415 36..418 582 35.8 Plus
Dere\GG13447-PA 414 GG13447-PA 37..412 39..419 551 33.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22516-PA 424 GH22516-PA 1..424 1..420 2007 87.5 Plus
Dgri\GH16400-PA 406 GH16400-PA 7..404 19..419 629 37 Plus
Dgri\GH14704-PA 419 GH14704-PA 24..415 27..420 583 35.4 Plus
Dgri\GH16965-PA 414 GH16965-PA 37..411 39..418 542 34 Plus
Dgri\GH15455-PA 336 GH15455-PA 1..326 84..411 509 36.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6638-PA 420 CG6638-PA 1..420 1..420 2195 100 Plus
Arc42-PA 405 CG4703-PA 23..403 35..419 623 37.6 Plus
CG4860-PA 415 CG4860-PA 37..411 39..418 589 37 Plus
CG12262-PA 419 CG12262-PA 25..416 27..420 577 35.9 Plus
CG3902-PA 414 CG3902-PA 37..412 39..419 548 33.3 Plus
CG7461-PC 627 CG7461-PC 109..445 81..411 500 35.4 Plus
CG7461-PB 627 CG7461-PB 109..445 81..411 500 35.4 Plus
CG9547-PA 419 CG9547-PA 41..411 39..415 346 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12421-PA 421 GI12421-PA 1..421 1..420 2029 88.9 Plus
Dmoj\GI22432-PA 406 GI22432-PA 9..404 21..419 612 36.9 Plus
Dmoj\GI12250-PA 420 GI12250-PA 24..415 27..420 591 35.4 Plus
Dmoj\GI22465-PA 407 GI22465-PA 5..397 10..411 569 35.4 Plus
Dmoj\GI11829-PA 414 GI11829-PA 8..412 1..419 549 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10298-PA 420 GL10298-PA 1..420 1..420 2130 94 Plus
Dper\GL12205-PA 405 GL12205-PA 7..403 11..419 640 37 Plus
Dper\GL25095-PA 419 GL25095-PA 31..416 33..420 576 35.7 Plus
Dper\GL21568-PA 413 GL21568-PA 31..409 35..418 573 35.2 Plus
Dper\GL25250-PA 415 GL25250-PA 38..413 39..419 556 34.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19744-PA 420 GA19744-PA 1..420 1..420 2130 94 Plus
Dpse\Arc42-PA 405 GA18369-PA 7..403 11..419 640 37 Plus
Dpse\GA11516-PA 419 GA11516-PA 31..416 33..420 576 35.7 Plus
Dpse\GA18485-PA 411 GA18485-PA 29..407 35..418 574 35.7 Plus
Dpse\GA17761-PA 415 GA17761-PA 38..413 39..419 556 34.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24928-PA 420 GM24928-PA 1..420 1..420 2230 98.8 Plus
Dsec\GM26869-PA 405 GM26869-PA 7..403 19..419 630 36.8 Plus
Dsec\GM26034-PA 420 GM26034-PA 34..420 36..418 593 36.2 Plus
Dsec\GM24997-PA 419 GM24997-PA 25..416 27..420 589 36.2 Plus
Dsec\GM21947-PA 627 GM21947-PA 112..446 84..412 499 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12977-PA 420 GD12977-PA 1..420 1..420 2239 99.3 Plus
Dsim\GD19319-PA 405 GD19319-PA 7..403 19..419 631 37.1 Plus
Dsim\GD20592-PA 415 GD20592-PA 34..411 36..418 597 36.6 Plus
Dsim\GD14030-PA 439 GD14030-PA 25..411 27..415 587 36.4 Plus
Dsim\GD12323-PA 420 GD12323-PA 37..418 39..419 547 33.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12313-PA 424 GJ12313-PA 1..424 1..420 2035 88.7 Plus
Dvir\GJ12315-PA 347 GJ12315-PA 1..347 74..420 1498 78.1 Plus
Dvir\GJ10995-PA 406 GJ10995-PA 6..404 18..419 620 36.1 Plus
Dvir\GJ11482-PA 420 GJ11482-PA 13..415 19..420 586 35.5 Plus
Dvir\GJ19560-PA 420 GJ19560-PA 13..415 19..420 586 35.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20558-PA 423 GK20558-PA 1..423 1..420 2015 88.7 Plus
Dwil\Arc42-PA 405 GK22361-PA 23..403 35..419 652 38.3 Plus
Dwil\GK11564-PA 384 GK11564-PA 5..382 39..419 594 36 Plus
Dwil\GK23895-PA 420 GK23895-PA 13..415 19..420 580 35.2 Plus
Dwil\GK20439-PA 417 GK20439-PA 37..415 39..419 545 33.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21295-PA 420 GE21295-PA 1..420 1..420 2204 97.6 Plus
Dyak\GE25631-PA 405 GE25631-PA 7..403 19..419 627 37.3 Plus
Dyak\GE24541-PA 415 GE24541-PA 34..415 36..418 587 36.1 Plus
Dyak\GE21636-PA 419 GE21636-PA 25..416 27..420 587 35.9 Plus
Dyak\GE22549-PA 414 GE22549-PA 37..412 39..419 548 33.4 Plus

RE62833.hyp Sequence

Translation from 78 to 1340

> RE62833.hyp
MALRFVAQSCRSLLQRGDRPLSWTRTLAHYPVNDAMFGLDEDRQKLREVA
FNFFQKELAPLAKEIDKLDNFKDMRPFWKKLGALGFLGITAEPDFGGTGG
SYLDHCIIMEEFSRAAGGVALSYGAHSNLCINQLTKNGTPEQKEKYLPKL
CSGEHVGGLAMSEPGAGSDVVSMKLRAERKGDYYVLNGSKFWITNGSDAD
TLIVYAKTGGSGVPDKHGITAFIVETAWEGFSVAQKLDKLGMRGSSTCEL
VFQDLKVPAKNILGQENRGVYVLMSGLDFERLVLAAGPVGLMQAACDVAF
DYAHQRKQMNKLIGEFQLLQGKMADMYTTLSACRSYLYTVARSCDAGNRS
PKDCAGVILYTAEKATKVALDAIQILGGNGYINENPTGRILRDAKLYEIG
AGTSEIRRWLIGRQLNQEYK*

RE62833.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6638-PA 420 CG6638-PA 1..420 1..420 2195 100 Plus
Arc42-PA 405 CG4703-PA 23..403 35..419 623 37.6 Plus
CG4860-PA 415 CG4860-PA 37..411 39..418 589 37 Plus
CG12262-PA 419 CG12262-PA 25..416 27..420 577 35.9 Plus
CG3902-PA 414 CG3902-PA 37..412 39..419 548 33.3 Plus