BDGP Sequence Production Resources |
Search the DGRC for RE62842
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 628 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Trs20-RA |
Protein status: | RE62842.pep: gold |
Preliminary Size: | 477 |
Sequenced Size: | 562 |
Gene | Date | Evidence |
---|---|---|
CG5161 | 2001-12-14 | Blastp of sequenced clone |
CG5161 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5161 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5161 | 2008-04-29 | Release 5.5 accounting |
CG5161 | 2008-08-15 | Release 5.9 accounting |
CG5161 | 2008-12-18 | 5.12 accounting |
562 bp (562 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071561
> RE62842.complete ACTGTTTTGGTTTTCGTGAAAATGTCCACATACTACTTTGTTATTGTGGG TCAAAATGATAATCCCATTTACGAGAAGGAATTCAGCACCGTGAACAAGG AACTAAGGAAAGAGGACCACAGGCACCTCACCCAGTTTATTGCCCATGCC GCCTTGGATTTGGTGGATGAGCACAAATGGAAGACGGCCAATATGCAGCT GAAATCCATTGATAGATTCAATCAGTGGTTTGTTTCGGCCTTCATCACAG CCAGCCAAATACGATTCATCATCGTTCATGACAACAAAAACGACGAGGGA ATCAAGAACTTCTTTAACGAGATGTATGACACGTATATCAAAAACTCCAT GAATGCCTTCTATCGCATCAACACACCCATTAAATCTCCGATGTTTGAGA AGAAGTCGGAGATCTTTGGTCGGAAGTATTTGTTATCATAAATTTGTTAA AACCTGTAGCCATTAAGTAATTGTGTAATATAAAACTTGAAATAATTTAA AAGCATAACTTTACCCTTTCTTATACAGTTGAGAAGACCCGAAACCAAAA AAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16120766..16121203 | 109..546 | 99 | <- | Minus |
chr3L | 16121261..16121368 | 1..108 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5161-RA | 1..420 | 22..441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5161-RA | 1..420 | 22..441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)72Dh-RA | 1..420 | 22..441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5161-RA | 1..420 | 22..441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs20-RA | 1..420 | 22..441 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5161-RA | 1..546 | 1..546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5161-RA | 1..546 | 1..546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)72Dh-RA | 30..575 | 1..546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5161-RA | 1..546 | 1..546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trs20-RA | 30..575 | 1..546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16131001..16131438 | 109..546 | 100 | <- | Minus |
3L | 16131496..16131603 | 1..108 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16131001..16131438 | 109..546 | 100 | <- | Minus |
3L | 16131496..16131603 | 1..108 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16131001..16131438 | 109..546 | 100 | <- | Minus |
3L | 16131496..16131603 | 1..108 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16124101..16124538 | 109..546 | 100 | <- | Minus |
arm_3L | 16124596..16124703 | 1..108 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16124101..16124538 | 109..546 | 100 | <- | Minus |
3L | 16124596..16124703 | 1..108 | 100 | Minus |
Translation from 0 to 440
> RE62842.hyp TVLVFVKMSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHA ALDLVDEHKWKTANMQLKSIDRFNQWFVSAFITASQIRFIIVHDNKNDEG IKNFFNEMYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trs20-PA | 139 | CG5161-PA | 1..139 | 8..146 | 735 | 100 | Plus |
Translation from 21 to 440
> RE62842.pep MSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDE HKWKTANMQLKSIDRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNE MYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10320-PA | 139 | GF10320-PA | 1..139 | 1..139 | 703 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13494-PA | 139 | GG13494-PA | 1..139 | 1..139 | 720 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15035-PA | 139 | GH15035-PA | 1..139 | 1..139 | 697 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trs20-PA | 139 | CG5161-PA | 1..139 | 1..139 | 735 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16687-PA | 139 | GI16687-PA | 1..139 | 1..139 | 691 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18033-PA | 139 | GL18033-PA | 1..139 | 1..139 | 696 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18699-PA | 139 | GA18699-PA | 1..139 | 1..139 | 696 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24443-PA | 139 | GM24443-PA | 1..139 | 1..139 | 728 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12512-PA | 139 | GD12512-PA | 1..139 | 1..139 | 732 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12939-PA | 139 | GJ12939-PA | 1..139 | 1..139 | 712 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17335-PA | 139 | GK17335-PA | 1..139 | 1..139 | 709 | 95.7 | Plus |