Clone RE62856 Report

Search the DGRC for RE62856

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:628
Well:56
Vector:pFlc-1
Associated Gene/Transcriptbrn-RA
Protein status:RE62856.pep: gold
Sequenced Size:1463

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4934 2003-01-01 Sim4 clustering to Release 3
brn 2008-04-29 Release 5.5 accounting
brn 2008-08-15 Release 5.9 accounting
brn 2008-12-18 5.12 accounting

Clone Sequence Records

RE62856.complete Sequence

1463 bp (1463 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021250

> RE62856.complete
GTAAAACAATTTTTTAGATTTGTAAGCACTCAATTTGAATGCTTTTAGTC
TTAGTTATTTTATTTTTCGTACGGTAGATGGGCGTTTAGTATTTTAACCG
CATCACGGTCACACTGGCGGATTTGTTTTTATTTTGGTCGCCATGCAAAG
TAAACACCGCAAACTGCTGCTGCGCTGCCTCCTGGTGCTGCCCCTCATCC
TTCTGGTGGACTATTGCGGCCTGCTGACCCACCTGCACGAGCTGAACTTC
GAGCGGCACTTTCACTACCCGCTGAACGATGACACTGGATCTGGGTCCGC
ATCCTCTGGACTGGACAAGTTCGCCTACCTGCGAGTGCCCTCGTTCACGG
CAGAGGTGCCGGTTGACCAGCCTGCGCGGCTCACGATGCTCATAAAGAGC
GCGGTGGGCAATTCGCGACGTCGGGAGGCCATTCGCCGGACTTGGGGCTA
CGAGGGTCGATTCTCAGACGTCCATCTGCGTCGCGTGTTCCTGCTGGGCA
CGGCCGAGGATAGTGAGAAAGACGTGGCTTGGGAGTCCCGCGAGCATGGC
GACATTCTGCAGGCGGAGTTCACGGACGCCTACTTCAACAACACGCTGAA
AACCATGCTGGGTATGCGCTGGGCTAGCGATCAGTTCAATCGCAGCGAGT
TCTATCTTTTCGTGGACGACGACTACTATGTTTCGGCCAAGAACGTGCTC
AAGTTTCTGGGCAGGGGGCGTCAGAGCCACCAGCCGGAGTTGCTGTTCGC
CGGGCACGTGTTTCAGACATCCCCGCTCCGCCACAAGTTCAGCAAGTGGT
ACGTTTCGTTGGAGGAATACCCCTTCGATCGGTGGCCACCGTACGTGACC
GCCGGCGCGTTCATTCTGTCGCAGAAGGCACTGCGCCAGCTGTATGCCGC
CAGCGTTCACCTGCCGCTCTTCCGGTTCGACGACGTCTACCTGGGCATAG
TGGCCTTGAAAGCGGGCATTTCCCTTCAGCACTGCGACGACTTCCGCTTC
CATCGGCCGGCGTACAAAGGTCCGGACAGCTATAGTTCGGTGATAGCCTC
GCACGAATTCGGCGATCCCGAGGAGATGACGCGGGTATGGAACGAGTGCC
GATCCGCCAATTACGCGTAGCAGCAAGAACAGGCAGGACTGAAGAGCGCT
GCAGATTGTACATATATACGAACGAGACAGCACCTAGACAACAGCCTTAT
AAAGTATATTAGGAGCAGTGGATGATACCTCAACCGTTCAGTGAGACTTT
AAACCAAGCAGCTGGTGCTAATAGTGCAAGATCGCAAGAGTAATTCAATT
CTAATTGTAAGCGTAATGATAAAGCAGTTGATTCAATTCGTATATATAGA
GATTATGTGCAAATGTCGGATAACGTATGTGTGGTCTGATACCTTTGAAT
GCAATATAAAGTTGATTAACATAGGAAAGCGAATAAAAAACTTAAAATAA
AAAAAAAAAAAAA

RE62856.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
brn-RA 1454 brn-RA 1..1451 1..1451 7255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3997570..3999017 1..1448 7135 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4104344..4105794 1..1451 7255 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4112442..4113892 1..1451 7255 100 Plus
Blast to na_te.dros performed 2019-03-15 20:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6812..6895 94..11 114 59.5 Minus

RE62856.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:27:13 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3997570..3999017 1..1448 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:24 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..978 143..1120 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:21:55 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..978 143..1120 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:13:04 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..978 143..1120 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:05:53 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..978 143..1120 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:45 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..978 143..1120 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:01 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..1448 1..1448 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:21:55 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..1448 1..1448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:04 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..1448 1..1448 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:05:53 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 1..1448 1..1448 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:45 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
brn-RA 3..1450 1..1448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:13 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
X 4104344..4105791 1..1448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:13 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
X 4104344..4105791 1..1448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:13 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
X 4104344..4105791 1..1448 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:04 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3998377..3999824 1..1448 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:16 Download gff for RE62856.complete
Subject Subject Range Query Range Percent Splice Strand
X 4112442..4113889 1..1448 100   Plus

RE62856.hyp Sequence

Translation from 142 to 1119

> RE62856.hyp
MQSKHRKLLLRCLLVLPLILLVDYCGLLTHLHELNFERHFHYPLNDDTGS
GSASSGLDKFAYLRVPSFTAEVPVDQPARLTMLIKSAVGNSRRREAIRRT
WGYEGRFSDVHLRRVFLLGTAEDSEKDVAWESREHGDILQAEFTDAYFNN
TLKTMLGMRWASDQFNRSEFYLFVDDDYYVSAKNVLKFLGRGRQSHQPEL
LFAGHVFQTSPLRHKFSKWYVSLEEYPFDRWPPYVTAGAFILSQKALRQL
YAASVHLPLFRFDDVYLGIVALKAGISLQHCDDFRFHRPAYKGPDSYSSV
IASHEFGDPEEMTRVWNECRSANYA*

RE62856.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
brn-PA 325 CG4934-PA 1..325 1..325 1732 100 Plus
CG8668-PB 585 CG8668-PB 341..570 79..311 270 28.5 Plus
CG8668-PA 585 CG8668-PA 341..570 79..311 270 28.5 Plus
CG11357-PD 434 CG11357-PD 125..349 74..280 258 31.6 Plus
CG11357-PC 434 CG11357-PC 125..349 74..280 258 31.6 Plus

RE62856.pep Sequence

Translation from 142 to 1119

> RE62856.pep
MQSKHRKLLLRCLLVLPLILLVDYCGLLTHLHELNFERHFHYPLNDDTGS
GSASSGLDKFAYLRVPSFTAEVPVDQPARLTMLIKSAVGNSRRREAIRRT
WGYEGRFSDVHLRRVFLLGTAEDSEKDVAWESREHGDILQAEFTDAYFNN
TLKTMLGMRWASDQFNRSEFYLFVDDDYYVSAKNVLKFLGRGRQSHQPEL
LFAGHVFQTSPLRHKFSKWYVSLEEYPFDRWPPYVTAGAFILSQKALRQL
YAASVHLPLFRFDDVYLGIVALKAGISLQHCDDFRFHRPAYKGPDSYSSV
IASHEFGDPEEMTRVWNECRSANYA*

RE62856.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20775-PA 321 GF20775-PA 15..321 15..325 1368 80.4 Plus
Dana\GF25081-PA 444 GF25081-PA 109..353 43..278 287 30 Plus
Dana\GF20020-PA 332 GF20020-PA 1..286 9..284 275 26.6 Plus
Dana\GF14760-PA 621 GF14760-PA 377..606 79..311 265 28.5 Plus
Dana\GF20798-PA 325 GF20798-PA 61..322 73..316 250 27.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18691-PA 327 GG18691-PA 1..327 1..325 1525 93.6 Plus
Dere\GG10515-PA 585 GG10515-PA 341..570 79..311 275 28.5 Plus
Dere\GG15238-PA 430 GG15238-PA 121..337 74..275 262 30.4 Plus
Dere\GG12769-PA 389 GG12769-PA 53..303 43..284 245 27.5 Plus
Dere\GG10514-PA 399 GG10514-PA 152..348 78..276 224 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24143-PA 326 GH24143-PA 12..326 12..325 1114 65.7 Plus
Dgri\GH11617-PA 614 GH11617-PA 370..599 79..311 301 29.1 Plus
Dgri\GH15689-PA 453 GH15689-PA 154..377 82..278 245 29 Plus
Dgri\GH24694-PA 390 GH24694-PA 91..299 82..279 219 29.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
brn-PA 325 CG4934-PA 1..325 1..325 1732 100 Plus
CG8668-PB 585 CG8668-PB 341..570 79..311 270 28.5 Plus
CG8668-PA 585 CG8668-PA 341..570 79..311 270 28.5 Plus
CG11357-PD 434 CG11357-PD 125..349 74..280 258 31.6 Plus
CG11357-PC 434 CG11357-PC 125..349 74..280 258 31.6 Plus
CG11357-PB 434 CG11357-PB 125..349 74..280 258 31.6 Plus
CG11357-PA 434 CG11357-PA 125..349 74..280 258 31.6 Plus
CG3038-PA 388 CG3038-PA 8..302 9..284 246 26.3 Plus
CG3038-PB 358 CG3038-PB 59..272 82..284 223 27.3 Plus
CG8673-PA 420 CG8673-PA 173..363 79..271 218 26.8 Plus
GalT1-PB 466 CG33145-PB 196..439 104..317 217 26.3 Plus
CG30037-PA 420 CG30037-PA 88..371 78..295 200 24.6 Plus
CG3038-PC 359 CG3038-PC 8..273 9..284 189 24.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16397-PA 323 GI16397-PA 12..323 12..325 1140 64.7 Plus
Dmoj\GI17920-PA 607 GI17920-PA 359..592 78..311 308 29.4 Plus
Dmoj\GI23623-PA 347 GI23623-PA 64..327 68..321 260 28.1 Plus
Dmoj\GI12738-PA 449 GI12738-PA 104..381 50..278 234 28.5 Plus
Dmoj\GI21823-PA 395 GI21823-PA 96..303 82..278 233 31.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21389-PA 318 GL21389-PA 1..318 1..325 1264 69.8 Plus
Dper\GL24762-PA 596 GL24762-PA 352..581 79..311 273 29.8 Plus
Dper\GL24766-PA 296 GL24766-PA 51..287 79..318 271 28.8 Plus
Dper\GL14116-PA 335 GL14116-PA 59..330 71..317 262 28.7 Plus
Dper\GL24763-PA 570 GL24763-PA 70..299 79..311 260 29.1 Plus
Dper\GL24763-PA 570 GL24763-PA 342..561 94..318 217 24.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18536-PA 318 GA18536-PA 1..318 1..325 1264 69.8 Plus
Dpse\GA21248-PA 598 GA21248-PA 354..583 79..311 274 29.8 Plus
Dpse\GA27742-PA 335 GA27742-PA 4..330 10..317 271 28.1 Plus
Dpse\GA28899-PA 230 GA28899-PA 2..221 96..318 241 30.8 Plus
Dpse\GA28901-PA 289 GA28901-PA 2..214 96..311 240 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12324-PA 325 GM12324-PA 1..325 1..325 1696 96.9 Plus
Dsec\GM16754-PA 587 GM16754-PA 343..572 79..311 267 28.1 Plus
Dsec\GM19049-PA 364 GM19049-PA 1..303 1..284 259 26.9 Plus
Dsec\GM14670-PA 433 GM14670-PA 123..340 74..275 238 29.2 Plus
Dsec\GM20396-PA 466 GM20396-PA 135..445 80..325 217 23.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16669-PA 325 GD16669-PA 1..325 1..325 1688 96.6 Plus
Dsim\GD23505-PA 587 GD23505-PA 343..572 79..311 266 28.1 Plus
Dsim\GD16488-PA 361 GD16488-PA 1..303 1..284 263 27.3 Plus
Dsim\GD13851-PA 433 GD13851-PA 123..340 74..275 238 29.2 Plus
Dsim\GD25871-PA 466 GD25871-PA 135..445 80..325 223 24.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17018-PA 322 GJ17018-PA 12..322 12..325 1121 64 Plus
Dvir\GJ17692-PA 621 GJ17692-PA 374..606 79..311 305 29.5 Plus
Dvir\GJ15510-PA 472 GJ15510-PA 165..457 50..323 267 27.4 Plus
Dvir\GJ20815-PA 339 GJ20815-PA 78..288 79..278 254 31.3 Plus
Dvir\GJ16997-PA 404 GJ16997-PA 104..312 81..278 236 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15559-PA 329 GK15559-PA 1..329 1..325 1158 62 Plus
Dwil\GK24845-PA 594 GK24845-PA 349..579 78..311 307 29.7 Plus
Dwil\GK16591-PA 453 GK16591-PA 139..399 48..284 240 28 Plus
Dwil\GK10121-PA 394 GK10121-PA 71..308 56..284 237 28.9 Plus
Dwil\GK22248-PA 463 GK22248-PA 135..436 80..317 237 25.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16330-PA 327 GE16330-PA 1..327 1..325 1517 92.4 Plus
Dyak\GE18735-PA 586 GE18735-PA 342..571 79..311 272 28.5 Plus
Dyak\GE21457-PA 435 GE21457-PA 126..342 74..275 257 30 Plus
Dyak\GE16596-PA 389 GE16596-PA 40..303 26..284 234 27.2 Plus
Dyak\GE13486-PA 466 GE13486-PA 135..445 80..325 230 25.3 Plus