Clone RE62864 Report

Search the DGRC for RE62864

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:628
Well:64
Vector:pFlc-1
Associated Gene/TranscriptCG14820-RA
Protein status:RE62864.pep: gold
Preliminary Size:939
Sequenced Size:1443

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14820 2001-12-14 Blastp of sequenced clone
CG14820 2002-01-01 Sim4 clustering to Release 2
CG14820 2003-01-01 Sim4 clustering to Release 3
CG14820 2008-04-29 Release 5.5 accounting
CG14820 2008-08-15 Release 5.9 accounting
CG14820 2008-12-18 5.12 accounting

Clone Sequence Records

RE62864.complete Sequence

1443 bp (1443 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071562

> RE62864.complete
AGTTTCACACGGGCATTCCCATAGAGCGGTATGTTGCTTAAGATTCTCCT
AGTCGTAGGACTCTTTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGATATG
ATAACTACAAGGTATACAATGTGAGGATCGATGATCTGGAGCAGTTTAAG
CTGCTTCACACGCAGGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTGAGGC
TCGTCACTTGGGTGAATCCTCCGATATAATGCTGCCTCCTGAATATCAGA
AGACATTTGAAAGCCTCTTGACCAAACACAATTTCACCTATAACCTGAAG
ATCGATAATGTCCAGACCCACATCGATGCCCAGAGACCCAAACAACGCAT
TACTTCCATGGAATGGACACAGTTTCACACTCTGGAAGAGATATACGCCT
GGTTGGATGTGATCGAGGATCGTTATCCGGATATAGTCACACCCTTTACC
ATCGGCAACTCATACGAGGGCAGACCGATTAGAGGTGTTAAAATTTCATA
CAAAGAGGGAAATCCCGCCGTTTTCATAGAGTCCAATATTCATGCCCGCG
AATGGATTACGTCAGCGACGATCACCTATTTCATCGATGAGTTGCTGGTG
CCTCGTAACCCGGCAGTCAGGGATATAGCTCAGAATGTGGACTGGTATAT
CATTCCCGTTCTAAATACAGATGGCTTTGCTTATTCCCATGAAGTGGAAC
GTCTTTGGCGAAAGTCCCGCCTGCCTTCAGATCCCACGGGGGAGTGCATT
GGAACTGATCTCAATAGGAACTTTGATTACCTGTGGATGTTGACTGGAGC
CGAATCGGATCCCTGTTCACAATTATATGCTGGTCCCTCACCAGAATCAG
ATCCCGAGATCAGTCAACTAACCGCCTACATAAACAACTCCATACCTGAA
GGCACTATAAAGATTTATATCTCATTGCATTCCTATGGACAGTATGTTCT
TTCGCCTTGGGGACACACAGCTCTAGAGTTCCCCGAACACTATCCACAAA
TGATGCACGTAGCCAAGGGCTTCTCGGATGCTCTATATAGAAGATATGGC
ACAGTATTTACCTATGGATCCAGTGCTACAACATTATATGAAGTATCTGG
TTCGGGCAAGGAATGGGCCTATGCGGTGAAGAACATTAAGATACACTATA
CCATAGAGCTGCGCGATAAGGGCGAATTGGGCTTTGTCCTTCCTCCGGAG
GATATTATTCCAGTGGCACGCGAGGTGACCGAAGGATTCGTGGGCATGAT
AGCCGCTGCACGGGAAATCGATATATTGTAGTTTAAAATAAAATTAAAGG
GAAATTACAAAAAGTTATCAAAAGTTCGGTTTAACAAAAAAAATGACATT
ACAAATGAACTTCTCCACAAAACTTGTATTATTTGTTGTAATAATGAAAC
ATATATCAAAACAATGTAAGCAAAACAAAAAAAAAAAAAAAAA

RE62864.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1527 CG14820-RA 87..1516 1..1430 7120 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6925447..6925965 179..697 2550 99.4 Plus
chr3L 24539361 chr3L 6926767..6927105 1088..1426 1680 99.7 Plus
chr3L 24539361 chr3L 6926351..6926647 791..1087 1485 100 Plus
chr3L 24539361 chr3L 6925211..6925390 1..180 855 98.3 Plus
chr3L 24539361 chr3L 6926163..6926257 696..790 475 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:08:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6933166..6933684 179..697 2580 99.8 Plus
3L 28110227 3L 6934486..6934828 1088..1430 1715 100 Plus
3L 28110227 3L 6934070..6934366 791..1087 1485 100 Plus
3L 28110227 3L 6932930..6933109 1..180 885 99.4 Plus
3L 28110227 3L 6933882..6933976 696..790 475 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6926266..6926784 179..697 2580 99.8 Plus
3L 28103327 3L 6927586..6927928 1088..1430 1715 100 Plus
3L 28103327 3L 6927170..6927466 791..1087 1485 100 Plus
3L 28103327 3L 6926030..6926209 1..180 885 99.4 Plus
3L 28103327 3L 6926982..6927076 696..790 475 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:49:27 has no hits.

RE62864.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:50:30 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6925211..6925390 1..180 98 -> Plus
chr3L 6925449..6925964 181..696 99 -> Plus
chr3L 6926164..6926257 697..790 100 -> Plus
chr3L 6926351..6926647 791..1087 100 -> Plus
chr3L 6926767..6927105 1088..1426 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:24 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1251 31..1281 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:52 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1251 31..1281 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:37:57 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1251 31..1281 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:27 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1251 31..1281 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:33 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1251 31..1281 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:03 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1426 1..1426 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:52 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1426 1..1426 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:57 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 5..1430 1..1426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:27 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1426 1..1426 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:33 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 5..1430 1..1426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:30 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6934070..6934366 791..1087 100 -> Plus
3L 6934486..6934824 1088..1426 100   Plus
3L 6932930..6933109 1..180 99 -> Plus
3L 6933168..6933683 181..696 99 -> Plus
3L 6933883..6933976 697..790 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:30 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6934070..6934366 791..1087 100 -> Plus
3L 6934486..6934824 1088..1426 100   Plus
3L 6932930..6933109 1..180 99 -> Plus
3L 6933168..6933683 181..696 99 -> Plus
3L 6933883..6933976 697..790 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:30 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6934070..6934366 791..1087 100 -> Plus
3L 6934486..6934824 1088..1426 100   Plus
3L 6932930..6933109 1..180 99 -> Plus
3L 6933168..6933683 181..696 99 -> Plus
3L 6933883..6933976 697..790 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:57 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6927586..6927924 1088..1426 100   Plus
arm_3L 6926030..6926209 1..180 99 -> Plus
arm_3L 6926268..6926783 181..696 99 -> Plus
arm_3L 6926983..6927076 697..790 100 -> Plus
arm_3L 6927170..6927466 791..1087 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:43 Download gff for RE62864.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6926268..6926783 181..696 99 -> Plus
3L 6926983..6927076 697..790 100 -> Plus
3L 6927170..6927466 791..1087 100 -> Plus
3L 6927586..6927924 1088..1426 100   Plus
3L 6926030..6926209 1..180 99 -> Plus

RE62864.pep Sequence

Translation from 30 to 1280

> RE62864.pep
MLLKILLVVGLFGLARSVEQVRYDNYKVYNVRIDDLEQFKLLHTQERSLK
LSSWREARHLGESSDIMLPPEYQKTFESLLTKHNFTYNLKIDNVQTHIDA
QRPKQRITSMEWTQFHTLEEIYAWLDVIEDRYPDIVTPFTIGNSYEGRPI
RGVKISYKEGNPAVFIESNIHAREWITSATITYFIDELLVPRNPAVRDIA
QNVDWYIIPVLNTDGFAYSHEVERLWRKSRLPSDPTGECIGTDLNRNFDY
LWMLTGAESDPCSQLYAGPSPESDPEISQLTAYINNSIPEGTIKIYISLH
SYGQYVLSPWGHTALEFPEHYPQMMHVAKGFSDALYRRYGTVFTYGSSAT
TLYEVSGSGKEWAYAVKNIKIHYTIELRDKGELGFVLPPEDIIPVAREVT
EGFVGMIAAAREIDIL*

RE62864.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23552-PA 416 GF23552-PA 1..416 1..416 1927 84.6 Plus
Dana\GF23551-PA 416 GF23551-PA 1..416 1..416 1921 84.9 Plus
Dana\GF14014-PA 428 GF14014-PA 1..423 1..416 928 45.9 Plus
Dana\GF14015-PA 351 GF14015-PA 1..348 67..413 871 47.3 Plus
Dana\GF12918-PA 424 GF12918-PA 27..419 21..412 796 41.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14391-PA 416 GG14391-PA 1..416 1..416 2085 93.3 Plus
Dere\GG23519-PA 422 GG23519-PA 6..422 2..416 959 44.8 Plus
Dere\GG23518-PA 429 GG23518-PA 25..423 19..416 914 46.7 Plus
Dere\GG20336-PA 422 GG20336-PA 1..421 1..416 785 38.4 Plus
Dere\GG10054-PA 427 GG10054-PA 21..422 18..414 742 38.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15366-PA 440 GH15366-PA 19..434 1..416 1775 78.4 Plus
Dgri\GH10072-PA 421 GH10072-PA 6..412 2..407 957 45.9 Plus
Dgri\GH10071-PA 430 GH10071-PA 29..424 19..416 879 45.7 Plus
Dgri\GH21762-PA 423 GH21762-PA 26..422 21..416 850 41 Plus
Dgri\GH25146-PA 426 GH25146-PA 18..422 12..413 674 34 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 416 CG14820-PA 1..416 1..416 2202 100 Plus
CG18585-PB 422 CG18585-PB 6..422 2..416 952 45.2 Plus
CG18585-PA 422 CG18585-PA 6..422 2..416 952 45.2 Plus
CG7025-PA 429 CG7025-PA 25..423 19..416 904 45.9 Plus
CG12374-PA 422 CG12374-PA 26..417 22..412 803 39.7 Plus
CG4017-PA 424 CG4017-PA 3..419 2..414 745 38.2 Plus
CG17633-PA 430 CG17633-PA 7..426 1..413 683 34.1 Plus
CG2915-PA 453 CG2915-PA 51..448 19..412 659 36.7 Plus
CG2915-PB 453 CG2915-PB 51..448 19..412 659 36.7 Plus
CG4408-PB 467 CG4408-PB 66..448 20..398 616 35.7 Plus
CG4408-PA 479 CG4408-PA 78..460 20..398 616 35.7 Plus
CG3108-PA 1132 CG3108-PA 722..1090 22..388 601 34.7 Plus
CG8560-PB 418 CG8560-PB 1..414 2..413 566 35.7 Plus
CG8560-PA 418 CG8560-PA 1..414 2..413 566 35.7 Plus
CG8562-PA 424 CG8562-PA 1..420 1..413 555 32.2 Plus
CG3097-PA 445 CG3097-PA 6..427 1..398 531 30.7 Plus
CG32379-PB 344 CG32379-PB 1..338 80..413 517 35.5 Plus
CG18417-PA 427 CG18417-PA 6..420 5..413 513 31.3 Plus
CG8945-PC 1430 CG8945-PC 978..1427 20..407 479 30.4 Plus
CG8563-PB 440 CG8563-PB 11..434 6..407 477 29.3 Plus
CG8563-PA 440 CG8563-PA 11..434 6..407 477 29.3 Plus
CG42264-PA 634 CG42264-PA 219..630 22..408 412 26.9 Plus
CG42264-PB 521 CG42264-PB 145..517 65..408 409 27.6 Plus
CG8539-PB 385 CG8539-PB 27..328 104..402 306 27 Plus
CG8539-PA 385 CG8539-PA 27..328 104..402 306 27 Plus
CG8564-PC 520 CG8564-PC 7..366 73..398 298 26.4 Plus
CG8564-PA 504 CG8564-PA 42..350 119..398 293 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12969-PA 416 GI12969-PA 15..416 15..416 1754 80.8 Plus
Dmoj\GI12968-PA 416 GI12968-PA 15..416 15..416 1685 77.1 Plus
Dmoj\GI12970-PA 416 GI12970-PA 1..416 1..416 1679 73.1 Plus
Dmoj\GI16514-PA 434 GI16514-PA 29..425 19..416 935 47.1 Plus
Dmoj\GI16517-PA 421 GI16517-PA 6..418 2..413 917 45.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13278-PA 358 GL13278-PA 28..358 86..416 1529 85.6 Plus
Dper\GL18860-PA 429 GL18860-PA 27..423 20..416 893 44.9 Plus
Dper\GL17014-PA 425 GL17014-PA 28..424 21..416 840 41.5 Plus
Dper\GL18933-PA 426 GL18933-PA 18..421 18..414 672 35.1 Plus
Dper\GL18934-PA 425 GL18934-PA 21..416 17..408 665 35.5 Plus
Dper\GL13278-PA 358 GL13278-PA 1..62 1..62 210 66.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13272-PA 416 GA13272-PA 1..416 1..416 1951 86.1 Plus
Dpse\GA15002-PA 423 GA15002-PA 6..420 1..413 921 43.5 Plus
Dpse\GA20041-PA 429 GA20041-PA 27..423 20..416 898 45.4 Plus
Dpse\GA11590-PA 425 GA11590-PA 28..424 21..416 839 41.5 Plus
Dpse\GA17870-PA 426 GA17870-PA 19..421 19..414 673 35.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14804-PA 416 GM14804-PA 1..416 1..416 2180 97.6 Plus
Dsec\GM13467-PA 422 GM13467-PA 6..422 2..416 956 45 Plus
Dsec\GM13458-PA 429 GM13458-PA 3..423 2..416 911 45 Plus
Dsec\GM17686-PA 424 GM17686-PA 3..419 2..414 728 37.2 Plus
Dsec\GM21424-PA 410 GM21424-PA 6..409 1..416 701 36.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22482-PA 422 GD22482-PA 6..422 2..416 955 45.2 Plus
Dsim\GD22481-PA 429 GD22481-PA 3..423 2..416 908 45 Plus
Dsim\GD13974-PA 165 GD13974-PA 5..165 223..416 790 80.9 Plus
Dsim\GD10919-PA 422 GD10919-PA 1..421 1..416 783 38.4 Plus
Dsim\GD23628-PA 424 GD23628-PA 3..419 2..414 727 37.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13115-PA 416 GJ13115-PA 19..416 19..416 1814 83.2 Plus
Dvir\GJ13116-PA 902 GJ13116-PA 1..285 1..306 1011 62.7 Plus
Dvir\GJ16227-PA 430 GJ16227-PA 18..425 8..416 919 47.1 Plus
Dvir\GJ16228-PA 421 GJ16228-PA 6..418 2..413 913 44.5 Plus
Dvir\GJ22186-PA 421 GJ22186-PA 19..420 16..416 847 40.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12561-PA 417 GK12561-PA 4..417 3..416 1756 77.8 Plus
Dwil\GK23954-PA 425 GK23954-PA 6..419 3..416 875 43.5 Plus
Dwil\GK23345-PA 426 GK23345-PA 22..425 16..416 862 41.4 Plus
Dwil\GK23955-PA 429 GK23955-PA 19..429 13..416 860 42.3 Plus
Dwil\GK23952-PA 418 GK23952-PA 7..415 5..413 857 43.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21580-PA 409 GE21580-PA 3..409 10..416 2054 93.1 Plus
Dyak\GE18345-PA 422 GE18345-PA 6..422 2..416 959 45.2 Plus
Dyak\GE18344-PA 429 GE18344-PA 25..423 19..416 923 46.7 Plus
Dyak\GE12495-PA 422 GE12495-PA 1..421 1..416 791 39.4 Plus
Dyak\GE18868-PA 424 GE18868-PA 3..419 2..414 735 37.5 Plus

RE62864.hyp Sequence

Translation from 30 to 1280

> RE62864.hyp
MLLKILLVVGLFGLARSVEQVRYDNYKVYNVRIDDLEQFKLLHTQERSLK
LSSWREARHLGESSDIMLPPEYQKTFESLLTKHNFTYNLKIDNVQTHIDA
QRPKQRITSMEWTQFHTLEEIYAWLDVIEDRYPDIVTPFTIGNSYEGRPI
RGVKISYKEGNPAVFIESNIHAREWITSATITYFIDELLVPRNPAVRDIA
QNVDWYIIPVLNTDGFAYSHEVERLWRKSRLPSDPTGECIGTDLNRNFDY
LWMLTGAESDPCSQLYAGPSPESDPEISQLTAYINNSIPEGTIKIYISLH
SYGQYVLSPWGHTALEFPEHYPQMMHVAKGFSDALYRRYGTVFTYGSSAT
TLYEVSGSGKEWAYAVKNIKIHYTIELRDKGELGFVLPPEDIIPVAREVT
EGFVGMIAAAREIDIL*

RE62864.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 416 CG14820-PA 1..416 1..416 2202 100 Plus
CG18585-PB 422 CG18585-PB 6..422 2..416 952 45.2 Plus
CG18585-PA 422 CG18585-PA 6..422 2..416 952 45.2 Plus
CG7025-PA 429 CG7025-PA 25..423 19..416 904 45.9 Plus
CG12374-PA 422 CG12374-PA 26..417 22..412 803 39.7 Plus