BDGP Sequence Production Resources |
Search the DGRC for RE63289
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 632 |
Well: | 89 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12496-RA |
Protein status: | RE63289.pep: gold |
Preliminary Size: | 1062 |
Sequenced Size: | 1552 |
Gene | Date | Evidence |
---|---|---|
CG12496 | 2001-12-14 | Blastp of sequenced clone |
CG12496 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12496 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12496 | 2008-04-29 | Release 5.5 accounting |
CG12496 | 2008-08-15 | Release 5.9 accounting |
CG12496 | 2008-12-18 | 5.12 accounting |
1552 bp (1552 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071571
> RE63289.complete AGTTTGTCAGCGAGAGCGGTCGAGAGCAGAAGACTAGCAGAGTCTAGAAG TACATCTTTTTTTTTTTGTGCACCAGGAGCAGCAGAAACAGAACCACACA CAACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGAACGAGATTCCCG TGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGGCTGCAGAGGAGG CAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGAGAACGTGCCTGA CACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCCGGCTGCGCAACA GTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAATGTCACCCCGGAG GCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAGTGTGCGATACGC CACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCAACGGACTGCCCA GTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTGGATCCCTTTCTG GGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGTTAACAAACTCAA GCAGCGTAGACTGGACGAGGACTTTGTGGCCACCTTGGAGCCGGAGTTGC AGGAGACGGCAGTGCCAGAGCCACCCACCCCCAAGGTGGAAGTGCGTCCA AGCACACCGCAGCCCGCCTCCACGCAGATGGGTGATCAGACCTTGGATCG CCTAATCGATGCCATCTTGGATTCCGCCTGCAAGGCGAACGCCAGCAGCA AGAAGAAGCCGAGAAGGTCCACCTTCAATCTGCGCAGACGCACCTTGGTC AAGCAGCAAATGGAGTCGAACTGCCCCCAGGAGGTGCTGTCGCCATCCTA CGCACCTGGAGACGATCCGGCCTCGGATCTGAGCTTTGGCCTGGTTCCCC TGCCCATGCACAACCTGATGCCCACTCCGGAACCGGCATCGCCCCTGGCC AAGATTCCTCACAACTTGCTTGTCCAACTGGCCACTCCAGTGGCCCCCAA GTCTGCCCCCTGCGACAACACCTTCTGCCTGGAGACTCCAGTCAAGGCCC TGAAGAGGACCCGCAAGGAGATCGTCGCCAAGGAGTCCCCCATTAAGCGC TACAAGGTCGACGAGCGCAATTACTTCGAGGTGGGATTGGCCCTGCCCTC GTCTATATATGTCTGAGCAGAGGTAATTTCAAACAGATCCTCGGAAAGCC ACAAAAATGAGAAGAGAAACTAAATGCGAGATGGAGATGAAGATGGAGAC GAGAAAGCGAGCAACGCTGACAAACGGGGGGAAAACGCTTAACTATGACG CTTAACTAGTTCCTAAGTCGTAAACTAATCATCTTTCAATTACTGTACAT AATTTCTTAGGCCACCTTAATCACTATTTATTCCAATTACTAATATAACC ATTTTTTTTTTTGCTGCTGTTATGTAGTTTTCGAATATACCTTTTTTTTC ATTATTTAATTTTAAACAAATATGAATATTTATTGCTACTTTAAGTTACC CAAATAATTATTTTTTCAAAATAAAAGCATTAAATCAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12496-RA | 1543 | CG12496-RA | 1..1540 | 1..1541 | 7665 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2303267..2304804 | 1536..1 | 7335 | 98.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 2409360..2410899 | 1541..1 | 7655 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 2417458..2418997 | 1541..1 | 7665 | 99.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2303267..2304804 | 1..1536 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1062 | 105..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1062 | 105..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1062 | 105..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1062 | 105..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1062 | 105..1166 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1535 | 1..1536 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1535 | 1..1536 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 3..1537 | 1..1536 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 1..1535 | 1..1536 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12496-RA | 3..1537 | 1..1536 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2409365..2410899 | 1..1536 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2409365..2410899 | 1..1536 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2409365..2410899 | 1..1536 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2303398..2304932 | 1..1536 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2417463..2418997 | 1..1536 | 99 | Minus |
Translation from 104 to 1165
> RE63289.pep MLKWTASAQRLNEIPVHDQDANQPQRRRLQRRQRRQRRATIANKENVPDT VGYTSTPVPITRLRNSPLVLAPLSDIRNVTPEAVVRSQAPQRVQSVRYAT TLPRFAEDYSPNGLPSGQHLALRGLAPLDPFLGQPRYIVGSGAGVNKLKQ RRLDEDFVATLEPELQETAVPEPPTPKVEVRPSTPQPASTQMGDQTLDRL IDAILDSACKANASSKKKPRRSTFNLRRRTLVKQQMESNCPQEVLSPSYA PGDDPASDLSFGLVPLPMHNLMPTPEPASPLAKIPHNLLVQLATPVAPKS APCDNTFCLETPVKALKRTRKEIVAKESPIKRYKVDERNYFEVGLALPSS IYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21953-PA | 368 | GF21953-PA | 1..368 | 1..353 | 1122 | 70.3 | Plus |
Dana\GF22246-PA | 366 | GF22246-PA | 63..230 | 54..259 | 164 | 31.5 | Plus |
Dana\GF21917-PA | 373 | GF21917-PA | 62..229 | 54..259 | 164 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12616-PA | 362 | GG12616-PA | 1..362 | 1..353 | 1567 | 89.2 | Plus |
Dere\GG19385-PA | 673 | GG19385-PA | 328..537 | 29..259 | 170 | 31.6 | Plus |
Dere\GG17895-PA | 398 | GG17895-PA | 37..248 | 29..259 | 165 | 30.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12811-PA | 367 | GH12811-PA | 1..367 | 1..353 | 932 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12496-PA | 353 | CG12496-PA | 1..353 | 1..353 | 1820 | 100 | Plus |
CG12708-PB | 405 | CG12708-PB | 1..253 | 1..259 | 196 | 29.8 | Plus |
CG12708-PA | 405 | CG12708-PA | 1..253 | 1..259 | 196 | 29.8 | Plus |
CG15646-PB | 410 | CG15646-PB | 52..272 | 29..259 | 178 | 29.8 | Plus |
CG15646-PA | 410 | CG15646-PA | 52..272 | 29..259 | 178 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15914-PA | 342 | GI15914-PA | 1..342 | 1..353 | 787 | 56.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26906-PA | 352 | GL26906-PA | 1..352 | 1..353 | 863 | 59.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11662-PA | 378 | GA11662-PA | 1..378 | 1..353 | 991 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18881-PA | 353 | GM18881-PA | 1..353 | 1..353 | 1775 | 96.6 | Plus |
Dsec\GM22540-PA | 403 | GM22540-PA | 119..265 | 96..259 | 161 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16365-PA | 353 | GD16365-PA | 1..353 | 1..353 | 1787 | 96.9 | Plus |
Dsim\GD15789-PA | 531 | GD15789-PA | 206..393 | 54..259 | 155 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16821-PA | 356 | GJ16821-PA | 1..356 | 1..353 | 847 | 60.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16210-PA | 354 | GK16210-PA | 1..354 | 1..353 | 906 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16948-PA | 370 | GE16948-PA | 1..370 | 1..353 | 1476 | 86.5 | Plus |
Dyak\GE16033-PA | 502 | GE16033-PA | 148..365 | 21..259 | 159 | 30.2 | Plus |
Dyak\GE17203-PA | 399 | GE17203-PA | 37..248 | 29..259 | 156 | 31.2 | Plus |
Translation from 104 to 1165
> RE63289.hyp MLKWTASAQRLNEIPVHDQDANQPQRRRLQRRQRRQRRATIANKENVPDT VGYTSTPVPITRLRNSPLVLAPLSDIRNVTPEAVVRSQAPQRVQSVRYAT TLPRFAEDYSPNGLPSGQHLALRGLAPLDPFLGQPRYIVGSGAGVNKLKQ RRLDEDFVATLEPELQETAVPEPPTPKVEVRPSTPQPASTQMGDQTLDRL IDAILDSACKANASSKKKPRRSTFNLRRRTLVKQQMESNCPQEVLSPSYA PGDDPASDLSFGLVPLPMHNLMPTPEPASPLAKIPHNLLVQLATPVAPKS APCDNTFCLETPVKALKRTRKEIVAKESPIKRYKVDERNYFEVGLALPSS IYV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12496-PA | 353 | CG12496-PA | 1..353 | 1..353 | 1820 | 100 | Plus |
CG12708-PB | 405 | CG12708-PB | 1..253 | 1..259 | 196 | 29.8 | Plus |
CG12708-PA | 405 | CG12708-PA | 1..253 | 1..259 | 196 | 29.8 | Plus |
CG15646-PB | 410 | CG15646-PB | 52..272 | 29..259 | 178 | 29.8 | Plus |
CG15646-PA | 410 | CG15646-PA | 52..272 | 29..259 | 178 | 29.8 | Plus |