Clone RE63289 Report

Search the DGRC for RE63289

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:632
Well:89
Vector:pFlc-1
Associated Gene/TranscriptCG12496-RA
Protein status:RE63289.pep: gold
Preliminary Size:1062
Sequenced Size:1552

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12496 2001-12-14 Blastp of sequenced clone
CG12496 2002-01-01 Sim4 clustering to Release 2
CG12496 2003-01-01 Sim4 clustering to Release 3
CG12496 2008-04-29 Release 5.5 accounting
CG12496 2008-08-15 Release 5.9 accounting
CG12496 2008-12-18 5.12 accounting

Clone Sequence Records

RE63289.complete Sequence

1552 bp (1552 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071571

> RE63289.complete
AGTTTGTCAGCGAGAGCGGTCGAGAGCAGAAGACTAGCAGAGTCTAGAAG
TACATCTTTTTTTTTTTGTGCACCAGGAGCAGCAGAAACAGAACCACACA
CAACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGAACGAGATTCCCG
TGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGGCTGCAGAGGAGG
CAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGAGAACGTGCCTGA
CACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCCGGCTGCGCAACA
GTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAATGTCACCCCGGAG
GCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAGTGTGCGATACGC
CACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCAACGGACTGCCCA
GTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTGGATCCCTTTCTG
GGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGTTAACAAACTCAA
GCAGCGTAGACTGGACGAGGACTTTGTGGCCACCTTGGAGCCGGAGTTGC
AGGAGACGGCAGTGCCAGAGCCACCCACCCCCAAGGTGGAAGTGCGTCCA
AGCACACCGCAGCCCGCCTCCACGCAGATGGGTGATCAGACCTTGGATCG
CCTAATCGATGCCATCTTGGATTCCGCCTGCAAGGCGAACGCCAGCAGCA
AGAAGAAGCCGAGAAGGTCCACCTTCAATCTGCGCAGACGCACCTTGGTC
AAGCAGCAAATGGAGTCGAACTGCCCCCAGGAGGTGCTGTCGCCATCCTA
CGCACCTGGAGACGATCCGGCCTCGGATCTGAGCTTTGGCCTGGTTCCCC
TGCCCATGCACAACCTGATGCCCACTCCGGAACCGGCATCGCCCCTGGCC
AAGATTCCTCACAACTTGCTTGTCCAACTGGCCACTCCAGTGGCCCCCAA
GTCTGCCCCCTGCGACAACACCTTCTGCCTGGAGACTCCAGTCAAGGCCC
TGAAGAGGACCCGCAAGGAGATCGTCGCCAAGGAGTCCCCCATTAAGCGC
TACAAGGTCGACGAGCGCAATTACTTCGAGGTGGGATTGGCCCTGCCCTC
GTCTATATATGTCTGAGCAGAGGTAATTTCAAACAGATCCTCGGAAAGCC
ACAAAAATGAGAAGAGAAACTAAATGCGAGATGGAGATGAAGATGGAGAC
GAGAAAGCGAGCAACGCTGACAAACGGGGGGAAAACGCTTAACTATGACG
CTTAACTAGTTCCTAAGTCGTAAACTAATCATCTTTCAATTACTGTACAT
AATTTCTTAGGCCACCTTAATCACTATTTATTCCAATTACTAATATAACC
ATTTTTTTTTTTGCTGCTGTTATGTAGTTTTCGAATATACCTTTTTTTTC
ATTATTTAATTTTAAACAAATATGAATATTTATTGCTACTTTAAGTTACC
CAAATAATTATTTTTTCAAAATAAAAGCATTAAATCAAAAAAAAAAAAAA
AA

RE63289.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12496-RA 1543 CG12496-RA 1..1540 1..1541 7665 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2303267..2304804 1536..1 7335 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:09:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2409360..2410899 1541..1 7655 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2417458..2418997 1541..1 7665 99.9 Minus
Blast to na_te.dros performed 2019-03-16 05:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 3516..3693 1494..1315 200 60.4 Minus
Stalker 7256 Stalker STALKER 7256bp 3410..3587 1494..1315 200 60.4 Minus

RE63289.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:50:36 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2303267..2304804 1..1536 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:42 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1062 105..1166 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:06 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1062 105..1166 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:04 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1062 105..1166 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:20 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1062 105..1166 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:41 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1062 105..1166 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:38:20 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1535 1..1536 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:06 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1535 1..1536 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:04 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 3..1537 1..1536 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:21 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 1..1535 1..1536 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:41 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12496-RA 3..1537 1..1536 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:36 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
X 2409365..2410899 1..1536 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:36 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
X 2409365..2410899 1..1536 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:36 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
X 2409365..2410899 1..1536 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:04 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2303398..2304932 1..1536 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:23 Download gff for RE63289.complete
Subject Subject Range Query Range Percent Splice Strand
X 2417463..2418997 1..1536 99   Minus

RE63289.pep Sequence

Translation from 104 to 1165

> RE63289.pep
MLKWTASAQRLNEIPVHDQDANQPQRRRLQRRQRRQRRATIANKENVPDT
VGYTSTPVPITRLRNSPLVLAPLSDIRNVTPEAVVRSQAPQRVQSVRYAT
TLPRFAEDYSPNGLPSGQHLALRGLAPLDPFLGQPRYIVGSGAGVNKLKQ
RRLDEDFVATLEPELQETAVPEPPTPKVEVRPSTPQPASTQMGDQTLDRL
IDAILDSACKANASSKKKPRRSTFNLRRRTLVKQQMESNCPQEVLSPSYA
PGDDPASDLSFGLVPLPMHNLMPTPEPASPLAKIPHNLLVQLATPVAPKS
APCDNTFCLETPVKALKRTRKEIVAKESPIKRYKVDERNYFEVGLALPSS
IYV*

RE63289.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21953-PA 368 GF21953-PA 1..368 1..353 1122 70.3 Plus
Dana\GF22246-PA 366 GF22246-PA 63..230 54..259 164 31.5 Plus
Dana\GF21917-PA 373 GF21917-PA 62..229 54..259 164 31.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12616-PA 362 GG12616-PA 1..362 1..353 1567 89.2 Plus
Dere\GG19385-PA 673 GG19385-PA 328..537 29..259 170 31.6 Plus
Dere\GG17895-PA 398 GG17895-PA 37..248 29..259 165 30.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12811-PA 367 GH12811-PA 1..367 1..353 932 59.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12496-PA 353 CG12496-PA 1..353 1..353 1820 100 Plus
CG12708-PB 405 CG12708-PB 1..253 1..259 196 29.8 Plus
CG12708-PA 405 CG12708-PA 1..253 1..259 196 29.8 Plus
CG15646-PB 410 CG15646-PB 52..272 29..259 178 29.8 Plus
CG15646-PA 410 CG15646-PA 52..272 29..259 178 29.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15914-PA 342 GI15914-PA 1..342 1..353 787 56.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26906-PA 352 GL26906-PA 1..352 1..353 863 59.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11662-PA 378 GA11662-PA 1..378 1..353 991 63.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18881-PA 353 GM18881-PA 1..353 1..353 1775 96.6 Plus
Dsec\GM22540-PA 403 GM22540-PA 119..265 96..259 161 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16365-PA 353 GD16365-PA 1..353 1..353 1787 96.9 Plus
Dsim\GD15789-PA 531 GD15789-PA 206..393 54..259 155 29.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16821-PA 356 GJ16821-PA 1..356 1..353 847 60.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16210-PA 354 GK16210-PA 1..354 1..353 906 59.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16948-PA 370 GE16948-PA 1..370 1..353 1476 86.5 Plus
Dyak\GE16033-PA 502 GE16033-PA 148..365 21..259 159 30.2 Plus
Dyak\GE17203-PA 399 GE17203-PA 37..248 29..259 156 31.2 Plus

RE63289.hyp Sequence

Translation from 104 to 1165

> RE63289.hyp
MLKWTASAQRLNEIPVHDQDANQPQRRRLQRRQRRQRRATIANKENVPDT
VGYTSTPVPITRLRNSPLVLAPLSDIRNVTPEAVVRSQAPQRVQSVRYAT
TLPRFAEDYSPNGLPSGQHLALRGLAPLDPFLGQPRYIVGSGAGVNKLKQ
RRLDEDFVATLEPELQETAVPEPPTPKVEVRPSTPQPASTQMGDQTLDRL
IDAILDSACKANASSKKKPRRSTFNLRRRTLVKQQMESNCPQEVLSPSYA
PGDDPASDLSFGLVPLPMHNLMPTPEPASPLAKIPHNLLVQLATPVAPKS
APCDNTFCLETPVKALKRTRKEIVAKESPIKRYKVDERNYFEVGLALPSS
IYV*

RE63289.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12496-PA 353 CG12496-PA 1..353 1..353 1820 100 Plus
CG12708-PB 405 CG12708-PB 1..253 1..259 196 29.8 Plus
CG12708-PA 405 CG12708-PA 1..253 1..259 196 29.8 Plus
CG15646-PB 410 CG15646-PB 52..272 29..259 178 29.8 Plus
CG15646-PA 410 CG15646-PA 52..272 29..259 178 29.8 Plus