BDGP Sequence Production Resources |
Search the DGRC for RE63406
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 634 |
Well: | 6 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Phax-RA |
Protein status: | RE63406.pep: gold |
Preliminary Size: | 1406 |
Sequenced Size: | 1560 |
Gene | Date | Evidence |
---|---|---|
CG8069 | 2001-12-14 | Blastp of sequenced clone |
CG8069 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8069 | 2003-01-01 | Sim4 clustering to Release 3 |
Phax | 2008-04-29 | Release 5.5 accounting |
Phax | 2008-08-15 | Release 5.9 accounting |
Phax | 2008-12-18 | 5.12 accounting |
1560 bp (1560 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071573
> RE63406.complete AGTCAGTATGGTCACTCTGCCGCTCAGTGTTGCACAAACAGCTGCACTTT GGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATGGAACTGCAC GCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAGCGACGATGA TGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGAAGGTGGCCA GTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAGGACGAGTCA CAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGACGGGTGCAT CAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACAAGAAGCGGA AAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCCACGGATGCT GAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTC TGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTA CCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGA TACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTC GGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTT CTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGA ACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGA TTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGAG ATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAAG GACGAATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGATGTGTGCCT AGAGCTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCGGCATGATGA TCAAAAACGGCATACGGAGACGTACACCAGGCGGGGTATTCCTGTTCCTA ATAAAGCACCACGATAACATCACTCAGGAGCAGCAGAAGCGCATTTTTAG TGAGGATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCGAAACGTTGA TGCGGGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGCAAGCAGGTT ACGGAACTGCCGACGTTAAATCAGCGCAAAGAGTACTACATGCAGGGCGA CGAGCAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACCCGCCACCCT CCCCTGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTACAGGACCCAC GAGATCAATATAAATCTTGTGGACAATGCGGAACTTCCCTCCACATCCAA AGCAGCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAATCAGCTACG ACCACGACTTTCTGGACGTCAATTGCGGGGACATGGACTTTTTCTAGGCC CACGCCAAGCGGCGGGCCCCTTTTATACTATTCTTGCATAGATAGACCCA TATTTGTACAATTAAATAAATGCCTAGCGAATTAGGAATCTACGAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phax.b | 1659 | Phax.b | 86..1632 | 1..1547 | 7720 | 99.9 | Plus |
Phax-RB | 1636 | Phax-RB | 191..1609 | 129..1547 | 7095 | 100 | Plus |
Phax.a | 1576 | Phax.a | 1..865 | 1..865 | 4310 | 99.8 | Plus |
Phax.a | 1576 | Phax.a | 872..1556 | 863..1547 | 3425 | 100 | Plus |
Phax-RB | 1636 | Phax-RB | 5..134 | 1..130 | 635 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5002027..5002761 | 129..863 | 3675 | 100 | Plus |
chr2R | 21145070 | chr2R | 5003297..5003608 | 1233..1544 | 1560 | 100 | Plus |
chr2R | 21145070 | chr2R | 5002962..5003238 | 956..1232 | 1385 | 100 | Plus |
chr2R | 21145070 | chr2R | 5001841..5001970 | 1..130 | 635 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 5002816..5002908 | 863..955 | 465 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9114449..9115183 | 129..863 | 3675 | 100 | Plus |
2R | 25286936 | 2R | 9115719..9116033 | 1233..1547 | 1575 | 100 | Plus |
2R | 25286936 | 2R | 9115384..9115660 | 956..1232 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 9114263..9114392 | 1..130 | 635 | 99.2 | Plus |
2R | 25286936 | 2R | 9115238..9115330 | 863..955 | 465 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9115648..9116382 | 129..863 | 3675 | 100 | Plus |
2R | 25260384 | 2R | 9116918..9117232 | 1233..1547 | 1575 | 100 | Plus |
2R | 25260384 | 2R | 9116583..9116859 | 956..1232 | 1385 | 100 | Plus |
2R | 25260384 | 2R | 9115462..9115591 | 1..130 | 635 | 99.2 | Plus |
2R | 25260384 | 2R | 9116437..9116529 | 863..955 | 465 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5001841..5001970 | 1..130 | 99 | -> | Plus |
chr2R | 5002029..5002761 | 131..863 | 100 | -> | Plus |
chr2R | 5002817..5002908 | 864..955 | 100 | -> | Plus |
chr2R | 5002962..5003238 | 956..1232 | 100 | -> | Plus |
chr2R | 5003297..5003608 | 1233..1544 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1362 | 86..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1362 | 86..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1362 | 86..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1362 | 86..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1362 | 86..1447 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1544 | 1..1544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1544 | 1..1544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1533 | 12..1544 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1544 | 1..1544 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Phax-RA | 1..1533 | 12..1544 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9115239..9115330 | 864..955 | 100 | -> | Plus |
2R | 9114263..9114392 | 1..130 | 99 | -> | Plus |
2R | 9115384..9115660 | 956..1232 | 100 | -> | Plus |
2R | 9115719..9116030 | 1233..1544 | 100 | Plus | |
2R | 9114451..9115183 | 131..863 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9115239..9115330 | 864..955 | 100 | -> | Plus |
2R | 9114263..9114392 | 1..130 | 99 | -> | Plus |
2R | 9115384..9115660 | 956..1232 | 100 | -> | Plus |
2R | 9115719..9116030 | 1233..1544 | 100 | Plus | |
2R | 9114451..9115183 | 131..863 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9115239..9115330 | 864..955 | 100 | -> | Plus |
2R | 9114263..9114392 | 1..130 | 99 | -> | Plus |
2R | 9115384..9115660 | 956..1232 | 100 | -> | Plus |
2R | 9115719..9116030 | 1233..1544 | 100 | Plus | |
2R | 9114451..9115183 | 131..863 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5001768..5001897 | 1..130 | 99 | -> | Plus |
arm_2R | 5001956..5002688 | 131..863 | 100 | -> | Plus |
arm_2R | 5002744..5002835 | 864..955 | 100 | -> | Plus |
arm_2R | 5002889..5003165 | 956..1232 | 100 | -> | Plus |
arm_2R | 5003224..5003535 | 1233..1544 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9115650..9116382 | 131..863 | 100 | -> | Plus |
2R | 9116438..9116529 | 864..955 | 100 | -> | Plus |
2R | 9116583..9116859 | 956..1232 | 100 | -> | Plus |
2R | 9116918..9117229 | 1233..1544 | 100 | Plus | |
2R | 9115462..9115591 | 1..130 | 99 | -> | Plus |
Translation from 0 to 1446
> RE63406.hyp VSMVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDD GVYTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCI KKLRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWAS ALQEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSS EDGGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSD FCEPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCL ELYKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFS EDRQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGD EQSEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSK AAAAAQGAPLKDLISYDHDFLDVNCGDMDFF*
Translation from 7 to 1446
> RE63406.pep MVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDDGV YTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCIKK LRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWASAL QEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSED GGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFC EPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLEL YKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFSED RQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGDEQ SEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSKAA AAAQGAPLKDLISYDHDFLDVNCGDMDFF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11956-PA | 452 | GF11956-PA | 1..452 | 27..479 | 1818 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23413-PA | 453 | GG23413-PA | 1..453 | 27..479 | 2122 | 93.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19855-PA | 473 | GH19855-PA | 1..473 | 27..479 | 1496 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Phax-PA | 453 | CG8069-PA | 1..453 | 27..479 | 2358 | 100 | Plus |
Phax-PB | 357 | CG8069-PB | 1..357 | 123..479 | 1862 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19804-PA | 468 | GI19804-PA | 1..468 | 27..479 | 1333 | 64.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17621-PA | 462 | GL17621-PA | 1..462 | 27..479 | 1695 | 77.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24847-PA | 462 | GA24847-PA | 1..462 | 27..479 | 1689 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21094-PA | 453 | GM21094-PA | 1..453 | 27..479 | 2358 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10631-PA | 453 | GD10631-PA | 1..453 | 27..479 | 2353 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18465-PA | 466 | GJ18465-PA | 1..466 | 27..479 | 1514 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22948-PA | 452 | GK22948-PA | 3..452 | 33..479 | 1456 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19254-PA | 453 | GE19254-PA | 1..453 | 27..479 | 2178 | 93.4 | Plus |