Clone RE63406 Report

Search the DGRC for RE63406

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:634
Well:6
Vector:pFlc-1
Associated Gene/TranscriptPhax-RA
Protein status:RE63406.pep: gold
Preliminary Size:1406
Sequenced Size:1560

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8069 2001-12-14 Blastp of sequenced clone
CG8069 2002-01-01 Sim4 clustering to Release 2
CG8069 2003-01-01 Sim4 clustering to Release 3
Phax 2008-04-29 Release 5.5 accounting
Phax 2008-08-15 Release 5.9 accounting
Phax 2008-12-18 5.12 accounting

Clone Sequence Records

RE63406.complete Sequence

1560 bp (1560 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071573

> RE63406.complete
AGTCAGTATGGTCACTCTGCCGCTCAGTGTTGCACAAACAGCTGCACTTT
GGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATGGAACTGCAC
GCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAGCGACGATGA
TGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGAAGGTGGCCA
GTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAGGACGAGTCA
CAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGACGGGTGCAT
CAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACAAGAAGCGGA
AAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCCACGGATGCT
GAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTC
TGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTA
CCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGA
TACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTC
GGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTT
CTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGA
ACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGA
TTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGAG
ATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAAG
GACGAATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGATGTGTGCCT
AGAGCTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCGGCATGATGA
TCAAAAACGGCATACGGAGACGTACACCAGGCGGGGTATTCCTGTTCCTA
ATAAAGCACCACGATAACATCACTCAGGAGCAGCAGAAGCGCATTTTTAG
TGAGGATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCGAAACGTTGA
TGCGGGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGCAAGCAGGTT
ACGGAACTGCCGACGTTAAATCAGCGCAAAGAGTACTACATGCAGGGCGA
CGAGCAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACCCGCCACCCT
CCCCTGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTACAGGACCCAC
GAGATCAATATAAATCTTGTGGACAATGCGGAACTTCCCTCCACATCCAA
AGCAGCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAATCAGCTACG
ACCACGACTTTCTGGACGTCAATTGCGGGGACATGGACTTTTTCTAGGCC
CACGCCAAGCGGCGGGCCCCTTTTATACTATTCTTGCATAGATAGACCCA
TATTTGTACAATTAAATAAATGCCTAGCGAATTAGGAATCTACGAAAAAA
AAAAAAAAAA

RE63406.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Phax.b 1659 Phax.b 86..1632 1..1547 7720 99.9 Plus
Phax-RB 1636 Phax-RB 191..1609 129..1547 7095 100 Plus
Phax.a 1576 Phax.a 1..865 1..865 4310 99.8 Plus
Phax.a 1576 Phax.a 872..1556 863..1547 3425 100 Plus
Phax-RB 1636 Phax-RB 5..134 1..130 635 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5002027..5002761 129..863 3675 100 Plus
chr2R 21145070 chr2R 5003297..5003608 1233..1544 1560 100 Plus
chr2R 21145070 chr2R 5002962..5003238 956..1232 1385 100 Plus
chr2R 21145070 chr2R 5001841..5001970 1..130 635 99.2 Plus
chr2R 21145070 chr2R 5002816..5002908 863..955 465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:09:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114449..9115183 129..863 3675 100 Plus
2R 25286936 2R 9115719..9116033 1233..1547 1575 100 Plus
2R 25286936 2R 9115384..9115660 956..1232 1385 100 Plus
2R 25286936 2R 9114263..9114392 1..130 635 99.2 Plus
2R 25286936 2R 9115238..9115330 863..955 465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9115648..9116382 129..863 3675 100 Plus
2R 25260384 2R 9116918..9117232 1233..1547 1575 100 Plus
2R 25260384 2R 9116583..9116859 956..1232 1385 100 Plus
2R 25260384 2R 9115462..9115591 1..130 635 99.2 Plus
2R 25260384 2R 9116437..9116529 863..955 465 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:57:42 has no hits.

RE63406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:58:29 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5001841..5001970 1..130 99 -> Plus
chr2R 5002029..5002761 131..863 100 -> Plus
chr2R 5002817..5002908 864..955 100 -> Plus
chr2R 5002962..5003238 956..1232 100 -> Plus
chr2R 5003297..5003608 1233..1544 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:46 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1362 86..1447 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:34 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1362 86..1447 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:58:01 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1362 86..1447 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:03 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1362 86..1447 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:55:02 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1362 86..1447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:56 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1544 1..1544 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:34 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1544 1..1544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:58:01 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1533 12..1544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:05 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1544 1..1544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:55:02 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1533 12..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:29 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9115239..9115330 864..955 100 -> Plus
2R 9114263..9114392 1..130 99 -> Plus
2R 9115384..9115660 956..1232 100 -> Plus
2R 9115719..9116030 1233..1544 100   Plus
2R 9114451..9115183 131..863 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:29 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9115239..9115330 864..955 100 -> Plus
2R 9114263..9114392 1..130 99 -> Plus
2R 9115384..9115660 956..1232 100 -> Plus
2R 9115719..9116030 1233..1544 100   Plus
2R 9114451..9115183 131..863 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:58:29 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9115239..9115330 864..955 100 -> Plus
2R 9114263..9114392 1..130 99 -> Plus
2R 9115384..9115660 956..1232 100 -> Plus
2R 9115719..9116030 1233..1544 100   Plus
2R 9114451..9115183 131..863 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:58:01 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5001768..5001897 1..130 99 -> Plus
arm_2R 5001956..5002688 131..863 100 -> Plus
arm_2R 5002744..5002835 864..955 100 -> Plus
arm_2R 5002889..5003165 956..1232 100 -> Plus
arm_2R 5003224..5003535 1233..1544 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:32 Download gff for RE63406.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9115650..9116382 131..863 100 -> Plus
2R 9116438..9116529 864..955 100 -> Plus
2R 9116583..9116859 956..1232 100 -> Plus
2R 9116918..9117229 1233..1544 100   Plus
2R 9115462..9115591 1..130 99 -> Plus

RE63406.hyp Sequence

Translation from 0 to 1446

> RE63406.hyp
VSMVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDD
GVYTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCI
KKLRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWAS
ALQEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSS
EDGGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSD
FCEPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCL
ELYKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFS
EDRQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGD
EQSEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSK
AAAAAQGAPLKDLISYDHDFLDVNCGDMDFF*

RE63406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-PA 453 CG8069-PA 1..453 29..481 2358 100 Plus
Phax-PB 357 CG8069-PB 1..357 125..481 1862 100 Plus

RE63406.pep Sequence

Translation from 7 to 1446

> RE63406.pep
MVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDDGV
YTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCIKK
LRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWASAL
QEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSED
GGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFC
EPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLEL
YKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFSED
RQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGDEQ
SEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSKAA
AAAQGAPLKDLISYDHDFLDVNCGDMDFF*

RE63406.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11956-PA 452 GF11956-PA 1..452 27..479 1818 82 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23413-PA 453 GG23413-PA 1..453 27..479 2122 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19855-PA 473 GH19855-PA 1..473 27..479 1496 69.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-PA 453 CG8069-PA 1..453 27..479 2358 100 Plus
Phax-PB 357 CG8069-PB 1..357 123..479 1862 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19804-PA 468 GI19804-PA 1..468 27..479 1333 64.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17621-PA 462 GL17621-PA 1..462 27..479 1695 77.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24847-PA 462 GA24847-PA 1..462 27..479 1689 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21094-PA 453 GM21094-PA 1..453 27..479 2358 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10631-PA 453 GD10631-PA 1..453 27..479 2353 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18465-PA 466 GJ18465-PA 1..466 27..479 1514 70.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22948-PA 452 GK22948-PA 3..452 33..479 1456 71.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19254-PA 453 GE19254-PA 1..453 27..479 2178 93.4 Plus