BDGP Sequence Production Resources |
Search the DGRC for RE63629
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 636 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mRpL38-RA |
Protein status: | RE63629.pep: gold |
Sequenced Size: | 1414 |
Gene | Date | Evidence |
---|---|---|
CG15871 | 2001-12-14 | Blastp of sequenced clone |
CG15871 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15871 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpL38 | 2008-04-29 | Release 5.5 accounting |
mRpL38 | 2008-08-15 | Release 5.9 accounting |
mRpL38 | 2008-12-18 | 5.12 accounting |
1414 bp (1414 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071580
> RE63629.complete GCTAGAAAAACGCGAGCCGCCTGAAAAGCAAGGCAAATTACAAAACACCA TGTCTTTCAGTAATTTGTTAATGAAAAGTGGCCTAACTGTGGCCGTGCGT GATGCGCAGGCCGCCGTCCTGATGACTGCCACACGGCAAGGACACACCAT ACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCTGGAGCAGCGGATTCGTG AGGAGAACGTTGAGGATCCGGAGGTGGTGGCCCGCATCAACATTGGCTTC CCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTAAAGAAGCGACTGGAGCA CCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGAGCAGCTGGCGCGGAGCA ACAAGCTGATCATCGATTTGGACAAGGTGCAGCGCACCTATGTGAAGACC ACGGGCCAGCATGATCTTCGCCTGGTGGCGGACCACTACGGCATCTTCGA GCACCTCTTTGGCAGCGCCTACTTTGTGCCCCGCGTGCCGCTCAACATAA GCTACCAACTGGACGGCGATAGCCTGGCACCCGTCTACAATGGCAACGTT ATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAGATCGATTTCGATGGCCT AGTGGATCCCATTACGGGACAAGCCGCCGGCCAGGACACTTACTGGACCC TGGTGGCCAGCAATCCCGATGCGCACTACACAAATGGAACTGCCGAGTGT CTGCATTGGTTCATTGCCAACATACCCAACGGCAAGGTGAGCGAGGGTCA GGTTCTCGCCGAGTATCTACCGCCGTTCCCGCCGCGCGGCGTTGGTTACC AACGCATGGTCTTTGTGCTCTACAAACAGCAGGCGCGCCTTGATCTCGGC TCTTATCAGTTGGCTGCTGCCGACTACGGTAATCTGGAGAAGCGCACCTT CAGCACCCTGGACTTCTATCGTCAGCACCAGGAGCAACTGACGCCGGCTG GCCTGGCCTTCTATCAGACCAACTGGGACGAGTCATTGACGCAGTTCTAC CACGATGTCTTGAAGATCAAAGAGCCCGTTTATGAGTACGACTTCCCCAA GCCGTACCTGACCGACCAGAAGTTCTTCCCGCTGAAGCAGCCCTTCAATT TGTACATGGACAAGCACCGCGATCAGAAGCAGGTGAACAAGGAGTATCTG GAGCGCAAGCTGGCCAAAACGCATCCATTCGAGGGGCCAAAGAAGCCGCT GCGCTACCCCAATGCCCATCCCATACGCGATGTGCCCTCGTGGCTGCGCA CTGAGATTCGGAAGGAGCGTCTGGGCACTGGTCGCGTGCAGGACTACTAG AACTACTCAATGGGGTGCTGTTAAGTTTTGTGTGTAATAGTGGTTAACAA GTTTTGTTTTTTTATTCACTGGAAGTACATGAGTTGCTAAAGTAAACAAA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 14118098..14118478 | 1014..1394 | 1905 | 100 | Plus |
chrX | 22417052 | chrX | 14117316..14117673 | 357..714 | 1775 | 99.7 | Plus |
chrX | 22417052 | chrX | 14117729..14118027 | 715..1013 | 1495 | 100 | Plus |
chrX | 22417052 | chrX | 14116823..14117022 | 1..200 | 1000 | 100 | Plus |
chrX | 22417052 | chrX | 14117093..14117249 | 200..356 | 785 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 14227566..14227946 | 1014..1394 | 1905 | 100 | Plus |
X | 23542271 | X | 14226784..14227141 | 357..714 | 1790 | 100 | Plus |
X | 23542271 | X | 14227197..14227495 | 715..1013 | 1495 | 100 | Plus |
X | 23542271 | X | 14226291..14226490 | 1..200 | 1000 | 100 | Plus |
X | 23542271 | X | 14226561..14226717 | 200..356 | 785 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 14235664..14236044 | 1014..1394 | 1905 | 100 | Plus |
X | 23527363 | X | 14234882..14235239 | 357..714 | 1790 | 100 | Plus |
X | 23527363 | X | 14235295..14235593 | 715..1013 | 1495 | 100 | Plus |
X | 23527363 | X | 14234389..14234588 | 1..200 | 1000 | 100 | Plus |
X | 23527363 | X | 14234659..14234815 | 200..356 | 785 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 14116823..14117022 | 1..200 | 100 | -> | Plus |
chrX | 14117094..14117249 | 201..356 | 100 | -> | Plus |
chrX | 14117316..14117673 | 357..714 | 99 | -> | Plus |
chrX | 14117729..14118027 | 715..1013 | 100 | -> | Plus |
chrX | 14118098..14118481 | 1014..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1251 | 50..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1251 | 50..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1251 | 50..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1251 | 50..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1251 | 50..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1397 | 1..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1397 | 1..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 3..1399 | 1..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 1..1397 | 1..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL38-RA | 3..1399 | 1..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14226291..14226490 | 1..200 | 100 | -> | Plus |
X | 14226562..14226717 | 201..356 | 100 | -> | Plus |
X | 14226784..14227141 | 357..714 | 100 | -> | Plus |
X | 14227197..14227495 | 715..1013 | 100 | -> | Plus |
X | 14227566..14227949 | 1014..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14226291..14226490 | 1..200 | 100 | -> | Plus |
X | 14226562..14226717 | 201..356 | 100 | -> | Plus |
X | 14226784..14227141 | 357..714 | 100 | -> | Plus |
X | 14227197..14227495 | 715..1013 | 100 | -> | Plus |
X | 14227566..14227949 | 1014..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14226291..14226490 | 1..200 | 100 | -> | Plus |
X | 14226562..14226717 | 201..356 | 100 | -> | Plus |
X | 14226784..14227141 | 357..714 | 100 | -> | Plus |
X | 14227197..14227495 | 715..1013 | 100 | -> | Plus |
X | 14227566..14227949 | 1014..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 14121230..14121528 | 715..1013 | 100 | -> | Plus |
arm_X | 14120817..14121174 | 357..714 | 100 | -> | Plus |
arm_X | 14120324..14120523 | 1..200 | 100 | -> | Plus |
arm_X | 14120595..14120750 | 201..356 | 100 | -> | Plus |
arm_X | 14121599..14121982 | 1014..1397 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14234882..14235239 | 357..714 | 100 | -> | Plus |
X | 14235295..14235593 | 715..1013 | 100 | -> | Plus |
X | 14235664..14236047 | 1014..1397 | 99 | Plus | |
X | 14234389..14234588 | 1..200 | 100 | -> | Plus |
X | 14234660..14234815 | 201..356 | 100 | -> | Plus |
Translation from 0 to 1299
> RE63629.hyp LEKREPPEKQGKLQNTMSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTI RGKPPGVARSLEQRIREENVEDPEVVARINIGFPQLKESRSAQLKKRLEH LKSQRSDKQLEQLARSNKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFE HLFGSAYFVPRVPLNISYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGL VDPITGQAAGQDTYWTLVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQ VLAEYLPPFPPRGVGYQRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTF STLDFYRQHQEQLTPAGLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPK PYLTDQKFFPLKQPFNLYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPL RYPNAHPIRDVPSWLRTEIRKERLGTGRVQDY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL38-PA | 416 | CG15871-PA | 1..416 | 17..432 | 2195 | 100 | Plus |
CG17919-PA | 202 | CG17919-PA | 12..196 | 141..333 | 177 | 27.3 | Plus |
a5-PA | 210 | CG5430-PA | 44..210 | 160..341 | 176 | 25 | Plus |
CG10298-PA | 187 | CG10298-PA | 39..180 | 181..333 | 172 | 29 | Plus |
Pebp1-PA | 176 | CG18594-PA | 32..166 | 181..327 | 159 | 28.2 | Plus |
Translation from 49 to 1299
> RE63629.pep MSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTIRGKPPGVARSLEQRIR EENVEDPEVVARINIGFPQLKESRSAQLKKRLEHLKSQRSDKQLEQLARS NKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFEHLFGSAYFVPRVPLNI SYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGLVDPITGQAAGQDTYWT LVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGY QRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTFSTLDFYRQHQEQLTPA GLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPKPYLTDQKFFPLKQPFN LYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPLRYPNAHPIRDVPSWLR TEIRKERLGTGRVQDY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15958-PA | 409 | GF15958-PA | 1..409 | 1..416 | 1826 | 80.5 | Plus |
Dana\GF16395-PA | 186 | GF16395-PA | 39..180 | 165..317 | 171 | 29 | Plus |
Dana\GF23379-PA | 176 | GF23379-PA | 25..175 | 158..320 | 168 | 29.7 | Plus |
Dana\GF15180-PA | 210 | GF15180-PA | 44..210 | 144..325 | 164 | 24.5 | Plus |
Dana\GF16396-PA | 202 | GF16396-PA | 54..190 | 164..311 | 155 | 27.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17835-PA | 416 | GG17835-PA | 1..416 | 1..416 | 2134 | 95.4 | Plus |
Dere\GG24786-PA | 210 | GG24786-PA | 24..210 | 121..325 | 176 | 24.3 | Plus |
Dere\GG13347-PA | 202 | GG13347-PA | 12..196 | 125..317 | 174 | 26.8 | Plus |
Dere\GG13336-PA | 187 | GG13336-PA | 39..180 | 165..317 | 171 | 29.7 | Plus |
Dere\GG11139-PA | 176 | GG11139-PA | 32..175 | 165..320 | 160 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12376-PA | 419 | GH12376-PA | 1..419 | 1..416 | 1767 | 75.9 | Plus |
Dgri\GH11408-PA | 212 | GH11408-PA | 60..212 | 162..325 | 177 | 24.9 | Plus |
Dgri\GH14040-PA | 202 | GH14040-PA | 55..190 | 165..311 | 172 | 30.9 | Plus |
Dgri\GH23119-PA | 188 | GH23119-PA | 32..185 | 144..312 | 159 | 30.4 | Plus |
Dgri\GH14039-PA | 186 | GH14039-PA | 36..180 | 162..317 | 158 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL38-PA | 416 | CG15871-PA | 1..416 | 1..416 | 2195 | 100 | Plus |
CG17919-PA | 202 | CG17919-PA | 12..196 | 125..317 | 177 | 27.3 | Plus |
a5-PA | 210 | CG5430-PA | 44..210 | 144..325 | 176 | 25 | Plus |
CG10298-PA | 187 | CG10298-PA | 39..180 | 165..317 | 172 | 29 | Plus |
Pebp1-PA | 176 | CG18594-PA | 32..166 | 165..311 | 159 | 28.2 | Plus |
CG7054-PA | 179 | CG7054-PA | 12..168 | 146..311 | 153 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14755-PA | 419 | GI14755-PA | 1..419 | 1..416 | 1849 | 78.3 | Plus |
Dmoj\GI14554-PA | 210 | GI14554-PA | 58..210 | 162..325 | 180 | 27.1 | Plus |
Dmoj\GI21977-PA | 179 | GI21977-PA | 14..168 | 144..311 | 174 | 30.5 | Plus |
Dmoj\GI24413-PA | 183 | GI24413-PA | 35..177 | 164..317 | 174 | 27.6 | Plus |
Dmoj\GI24414-PA | 202 | GI24414-PA | 37..190 | 147..311 | 159 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12995-PA | 417 | GL12995-PA | 1..417 | 1..416 | 1917 | 83 | Plus |
Dper\GL19977-PA | 417 | GL19977-PA | 1..417 | 1..416 | 1905 | 82.5 | Plus |
Dper\GL24079-PA | 203 | GL24079-PA | 68..197 | 187..317 | 174 | 30.1 | Plus |
Dper\GL24078-PA | 189 | GL24078-PA | 38..182 | 162..317 | 166 | 29.1 | Plus |
Dper\GL24219-PA | 179 | GL24219-PA | 12..168 | 143..311 | 164 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13994-PA | 417 | GA13994-PA | 1..417 | 1..416 | 1932 | 83.5 | Plus |
Dpse\GA14724-PA | 203 | GA14724-PA | 68..197 | 187..317 | 173 | 30.1 | Plus |
Dpse\GA20063-PA | 179 | GA20063-PA | 12..168 | 143..311 | 167 | 29.8 | Plus |
Dpse\GA10227-PA | 189 | GA10227-PA | 38..182 | 162..317 | 165 | 29.1 | Plus |
Dpse\GA15006-PA | 176 | GA15006-PA | 15..123 | 144..264 | 157 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17664-PA | 416 | GM17664-PA | 1..416 | 1..416 | 2165 | 97.1 | Plus |
Dsec\GM16814-PA | 210 | GM16814-PA | 44..210 | 144..325 | 179 | 26.2 | Plus |
Dsec\GM10887-PA | 202 | GM10887-PA | 21..196 | 134..317 | 173 | 27.5 | Plus |
Dsec\GM10886-PA | 187 | GM10886-PA | 42..180 | 168..317 | 170 | 29.6 | Plus |
Dsec\GM26436-PA | 179 | GM26436-PA | 12..168 | 146..311 | 164 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17162-PA | 416 | GD17162-PA | 1..416 | 1..416 | 2146 | 96.4 | Plus |
Dsim\GD23094-PA | 210 | GD23094-PA | 44..210 | 144..325 | 176 | 25.7 | Plus |
Dsim\GD19865-PA | 187 | GD19865-PA | 42..180 | 168..317 | 174 | 30.3 | Plus |
Dsim\GD19866-PA | 202 | GD19866-PA | 18..196 | 131..317 | 173 | 27.1 | Plus |
Dsim\GD20954-PA | 176 | GD20954-PA | 32..175 | 165..320 | 160 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19158-PA | 412 | GJ19158-PA | 1..412 | 8..416 | 1806 | 78.2 | Plus |
Dvir\GJ14271-PA | 186 | GJ14271-PA | 36..180 | 162..317 | 186 | 28.5 | Plus |
Dvir\GJ14272-PA | 200 | GJ14272-PA | 41..189 | 148..311 | 185 | 29.2 | Plus |
Dvir\GJ17014-PA | 208 | GJ17014-PA | 56..208 | 162..325 | 179 | 24.9 | Plus |
Dvir\GJ14337-PA | 179 | GJ14337-PA | 14..168 | 144..311 | 173 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25755-PA | 420 | GK25755-PA | 1..420 | 1..416 | 1704 | 73.6 | Plus |
Dwil\GK13055-PA | 191 | GK13055-PA | 21..184 | 142..317 | 179 | 27.6 | Plus |
Dwil\GK15187-PA | 369 | GK15187-PA | 216..369 | 162..325 | 170 | 24.6 | Plus |
Dwil\GK13056-PA | 202 | GK13056-PA | 11..196 | 125..317 | 167 | 27.3 | Plus |
Dwil\GK11697-PA | 182 | GK11697-PA | 30..171 | 165..311 | 163 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17128-PA | 416 | GE17128-PA | 1..416 | 1..416 | 2152 | 96.2 | Plus |
Dyak\GE10211-PA | 202 | GE10211-PA | 12..196 | 125..317 | 175 | 27.8 | Plus |
Dyak\GE10210-PA | 187 | GE10210-PA | 39..180 | 165..317 | 169 | 29.7 | Plus |
Dyak\GE17539-PA | 210 | GE17539-PA | 44..210 | 144..325 | 165 | 25.7 | Plus |
Dyak\GE10305-PA | 176 | GE10305-PA | 32..175 | 165..320 | 159 | 27.2 | Plus |