Clone RE63629 Report

Search the DGRC for RE63629

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:636
Well:29
Vector:pFlc-1
Associated Gene/TranscriptmRpL38-RA
Protein status:RE63629.pep: gold
Sequenced Size:1414

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15871 2001-12-14 Blastp of sequenced clone
CG15871 2002-01-01 Sim4 clustering to Release 2
CG15871 2003-01-01 Sim4 clustering to Release 3
mRpL38 2008-04-29 Release 5.5 accounting
mRpL38 2008-08-15 Release 5.9 accounting
mRpL38 2008-12-18 5.12 accounting

Clone Sequence Records

RE63629.complete Sequence

1414 bp (1414 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071580

> RE63629.complete
GCTAGAAAAACGCGAGCCGCCTGAAAAGCAAGGCAAATTACAAAACACCA
TGTCTTTCAGTAATTTGTTAATGAAAAGTGGCCTAACTGTGGCCGTGCGT
GATGCGCAGGCCGCCGTCCTGATGACTGCCACACGGCAAGGACACACCAT
ACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCTGGAGCAGCGGATTCGTG
AGGAGAACGTTGAGGATCCGGAGGTGGTGGCCCGCATCAACATTGGCTTC
CCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTAAAGAAGCGACTGGAGCA
CCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGAGCAGCTGGCGCGGAGCA
ACAAGCTGATCATCGATTTGGACAAGGTGCAGCGCACCTATGTGAAGACC
ACGGGCCAGCATGATCTTCGCCTGGTGGCGGACCACTACGGCATCTTCGA
GCACCTCTTTGGCAGCGCCTACTTTGTGCCCCGCGTGCCGCTCAACATAA
GCTACCAACTGGACGGCGATAGCCTGGCACCCGTCTACAATGGCAACGTT
ATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAGATCGATTTCGATGGCCT
AGTGGATCCCATTACGGGACAAGCCGCCGGCCAGGACACTTACTGGACCC
TGGTGGCCAGCAATCCCGATGCGCACTACACAAATGGAACTGCCGAGTGT
CTGCATTGGTTCATTGCCAACATACCCAACGGCAAGGTGAGCGAGGGTCA
GGTTCTCGCCGAGTATCTACCGCCGTTCCCGCCGCGCGGCGTTGGTTACC
AACGCATGGTCTTTGTGCTCTACAAACAGCAGGCGCGCCTTGATCTCGGC
TCTTATCAGTTGGCTGCTGCCGACTACGGTAATCTGGAGAAGCGCACCTT
CAGCACCCTGGACTTCTATCGTCAGCACCAGGAGCAACTGACGCCGGCTG
GCCTGGCCTTCTATCAGACCAACTGGGACGAGTCATTGACGCAGTTCTAC
CACGATGTCTTGAAGATCAAAGAGCCCGTTTATGAGTACGACTTCCCCAA
GCCGTACCTGACCGACCAGAAGTTCTTCCCGCTGAAGCAGCCCTTCAATT
TGTACATGGACAAGCACCGCGATCAGAAGCAGGTGAACAAGGAGTATCTG
GAGCGCAAGCTGGCCAAAACGCATCCATTCGAGGGGCCAAAGAAGCCGCT
GCGCTACCCCAATGCCCATCCCATACGCGATGTGCCCTCGTGGCTGCGCA
CTGAGATTCGGAAGGAGCGTCTGGGCACTGGTCGCGTGCAGGACTACTAG
AACTACTCAATGGGGTGCTGTTAAGTTTTGTGTGTAATAGTGGTTAACAA
GTTTTGTTTTTTTATTCACTGGAAGTACATGAGTTGCTAAAGTAAACAAA
AAAAAAAAAAAAAA

RE63629.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1473 mRpL38-RA 34..1427 1..1394 6970 100 Plus
CG42271-RC 4601 CG42271-RC 4546..4601 1394..1339 280 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14118098..14118478 1014..1394 1905 100 Plus
chrX 22417052 chrX 14117316..14117673 357..714 1775 99.7 Plus
chrX 22417052 chrX 14117729..14118027 715..1013 1495 100 Plus
chrX 22417052 chrX 14116823..14117022 1..200 1000 100 Plus
chrX 22417052 chrX 14117093..14117249 200..356 785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:09:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14227566..14227946 1014..1394 1905 100 Plus
X 23542271 X 14226784..14227141 357..714 1790 100 Plus
X 23542271 X 14227197..14227495 715..1013 1495 100 Plus
X 23542271 X 14226291..14226490 1..200 1000 100 Plus
X 23542271 X 14226561..14226717 200..356 785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14235664..14236044 1014..1394 1905 100 Plus
X 23527363 X 14234882..14235239 357..714 1790 100 Plus
X 23527363 X 14235295..14235593 715..1013 1495 100 Plus
X 23527363 X 14234389..14234588 1..200 1000 100 Plus
X 23527363 X 14234659..14234815 200..356 785 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:04:58 has no hits.

RE63629.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:05:50 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14116823..14117022 1..200 100 -> Plus
chrX 14117094..14117249 201..356 100 -> Plus
chrX 14117316..14117673 357..714 99 -> Plus
chrX 14117729..14118027 715..1013 100 -> Plus
chrX 14118098..14118481 1014..1397 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:29:59 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1251 50..1300 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:52 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1251 50..1300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:26:27 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1251 50..1300 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:38:56 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1251 50..1300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:22:43 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1251 50..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:45:13 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1397 1..1397 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:51 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1397 1..1397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:26:27 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 3..1399 1..1397 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:38:57 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1397 1..1397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:43 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 3..1399 1..1397 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:50 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
X 14226291..14226490 1..200 100 -> Plus
X 14226562..14226717 201..356 100 -> Plus
X 14226784..14227141 357..714 100 -> Plus
X 14227197..14227495 715..1013 100 -> Plus
X 14227566..14227949 1014..1397 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:50 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
X 14226291..14226490 1..200 100 -> Plus
X 14226562..14226717 201..356 100 -> Plus
X 14226784..14227141 357..714 100 -> Plus
X 14227197..14227495 715..1013 100 -> Plus
X 14227566..14227949 1014..1397 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:05:50 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
X 14226291..14226490 1..200 100 -> Plus
X 14226562..14226717 201..356 100 -> Plus
X 14226784..14227141 357..714 100 -> Plus
X 14227197..14227495 715..1013 100 -> Plus
X 14227566..14227949 1014..1397 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:26:27 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14121230..14121528 715..1013 100 -> Plus
arm_X 14120817..14121174 357..714 100 -> Plus
arm_X 14120324..14120523 1..200 100 -> Plus
arm_X 14120595..14120750 201..356 100 -> Plus
arm_X 14121599..14121982 1014..1397 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:15:43 Download gff for RE63629.complete
Subject Subject Range Query Range Percent Splice Strand
X 14234882..14235239 357..714 100 -> Plus
X 14235295..14235593 715..1013 100 -> Plus
X 14235664..14236047 1014..1397 99   Plus
X 14234389..14234588 1..200 100 -> Plus
X 14234660..14234815 201..356 100 -> Plus

RE63629.hyp Sequence

Translation from 0 to 1299

> RE63629.hyp
LEKREPPEKQGKLQNTMSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTI
RGKPPGVARSLEQRIREENVEDPEVVARINIGFPQLKESRSAQLKKRLEH
LKSQRSDKQLEQLARSNKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFE
HLFGSAYFVPRVPLNISYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGL
VDPITGQAAGQDTYWTLVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQ
VLAEYLPPFPPRGVGYQRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTF
STLDFYRQHQEQLTPAGLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPK
PYLTDQKFFPLKQPFNLYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPL
RYPNAHPIRDVPSWLRTEIRKERLGTGRVQDY*

RE63629.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-PA 416 CG15871-PA 1..416 17..432 2195 100 Plus
CG17919-PA 202 CG17919-PA 12..196 141..333 177 27.3 Plus
a5-PA 210 CG5430-PA 44..210 160..341 176 25 Plus
CG10298-PA 187 CG10298-PA 39..180 181..333 172 29 Plus
Pebp1-PA 176 CG18594-PA 32..166 181..327 159 28.2 Plus

RE63629.pep Sequence

Translation from 49 to 1299

> RE63629.pep
MSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTIRGKPPGVARSLEQRIR
EENVEDPEVVARINIGFPQLKESRSAQLKKRLEHLKSQRSDKQLEQLARS
NKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFEHLFGSAYFVPRVPLNI
SYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGLVDPITGQAAGQDTYWT
LVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGY
QRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTFSTLDFYRQHQEQLTPA
GLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPKPYLTDQKFFPLKQPFN
LYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPLRYPNAHPIRDVPSWLR
TEIRKERLGTGRVQDY*

RE63629.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15958-PA 409 GF15958-PA 1..409 1..416 1826 80.5 Plus
Dana\GF16395-PA 186 GF16395-PA 39..180 165..317 171 29 Plus
Dana\GF23379-PA 176 GF23379-PA 25..175 158..320 168 29.7 Plus
Dana\GF15180-PA 210 GF15180-PA 44..210 144..325 164 24.5 Plus
Dana\GF16396-PA 202 GF16396-PA 54..190 164..311 155 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17835-PA 416 GG17835-PA 1..416 1..416 2134 95.4 Plus
Dere\GG24786-PA 210 GG24786-PA 24..210 121..325 176 24.3 Plus
Dere\GG13347-PA 202 GG13347-PA 12..196 125..317 174 26.8 Plus
Dere\GG13336-PA 187 GG13336-PA 39..180 165..317 171 29.7 Plus
Dere\GG11139-PA 176 GG11139-PA 32..175 165..320 160 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12376-PA 419 GH12376-PA 1..419 1..416 1767 75.9 Plus
Dgri\GH11408-PA 212 GH11408-PA 60..212 162..325 177 24.9 Plus
Dgri\GH14040-PA 202 GH14040-PA 55..190 165..311 172 30.9 Plus
Dgri\GH23119-PA 188 GH23119-PA 32..185 144..312 159 30.4 Plus
Dgri\GH14039-PA 186 GH14039-PA 36..180 162..317 158 24.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-PA 416 CG15871-PA 1..416 1..416 2195 100 Plus
CG17919-PA 202 CG17919-PA 12..196 125..317 177 27.3 Plus
a5-PA 210 CG5430-PA 44..210 144..325 176 25 Plus
CG10298-PA 187 CG10298-PA 39..180 165..317 172 29 Plus
Pebp1-PA 176 CG18594-PA 32..166 165..311 159 28.2 Plus
CG7054-PA 179 CG7054-PA 12..168 146..311 153 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14755-PA 419 GI14755-PA 1..419 1..416 1849 78.3 Plus
Dmoj\GI14554-PA 210 GI14554-PA 58..210 162..325 180 27.1 Plus
Dmoj\GI21977-PA 179 GI21977-PA 14..168 144..311 174 30.5 Plus
Dmoj\GI24413-PA 183 GI24413-PA 35..177 164..317 174 27.6 Plus
Dmoj\GI24414-PA 202 GI24414-PA 37..190 147..311 159 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12995-PA 417 GL12995-PA 1..417 1..416 1917 83 Plus
Dper\GL19977-PA 417 GL19977-PA 1..417 1..416 1905 82.5 Plus
Dper\GL24079-PA 203 GL24079-PA 68..197 187..317 174 30.1 Plus
Dper\GL24078-PA 189 GL24078-PA 38..182 162..317 166 29.1 Plus
Dper\GL24219-PA 179 GL24219-PA 12..168 143..311 164 29.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13994-PA 417 GA13994-PA 1..417 1..416 1932 83.5 Plus
Dpse\GA14724-PA 203 GA14724-PA 68..197 187..317 173 30.1 Plus
Dpse\GA20063-PA 179 GA20063-PA 12..168 143..311 167 29.8 Plus
Dpse\GA10227-PA 189 GA10227-PA 38..182 162..317 165 29.1 Plus
Dpse\GA15006-PA 176 GA15006-PA 15..123 144..264 157 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17664-PA 416 GM17664-PA 1..416 1..416 2165 97.1 Plus
Dsec\GM16814-PA 210 GM16814-PA 44..210 144..325 179 26.2 Plus
Dsec\GM10887-PA 202 GM10887-PA 21..196 134..317 173 27.5 Plus
Dsec\GM10886-PA 187 GM10886-PA 42..180 168..317 170 29.6 Plus
Dsec\GM26436-PA 179 GM26436-PA 12..168 146..311 164 30 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17162-PA 416 GD17162-PA 1..416 1..416 2146 96.4 Plus
Dsim\GD23094-PA 210 GD23094-PA 44..210 144..325 176 25.7 Plus
Dsim\GD19865-PA 187 GD19865-PA 42..180 168..317 174 30.3 Plus
Dsim\GD19866-PA 202 GD19866-PA 18..196 131..317 173 27.1 Plus
Dsim\GD20954-PA 176 GD20954-PA 32..175 165..320 160 27.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19158-PA 412 GJ19158-PA 1..412 8..416 1806 78.2 Plus
Dvir\GJ14271-PA 186 GJ14271-PA 36..180 162..317 186 28.5 Plus
Dvir\GJ14272-PA 200 GJ14272-PA 41..189 148..311 185 29.2 Plus
Dvir\GJ17014-PA 208 GJ17014-PA 56..208 162..325 179 24.9 Plus
Dvir\GJ14337-PA 179 GJ14337-PA 14..168 144..311 173 33.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25755-PA 420 GK25755-PA 1..420 1..416 1704 73.6 Plus
Dwil\GK13055-PA 191 GK13055-PA 21..184 142..317 179 27.6 Plus
Dwil\GK15187-PA 369 GK15187-PA 216..369 162..325 170 24.6 Plus
Dwil\GK13056-PA 202 GK13056-PA 11..196 125..317 167 27.3 Plus
Dwil\GK11697-PA 182 GK11697-PA 30..171 165..311 163 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17128-PA 416 GE17128-PA 1..416 1..416 2152 96.2 Plus
Dyak\GE10211-PA 202 GE10211-PA 12..196 125..317 175 27.8 Plus
Dyak\GE10210-PA 187 GE10210-PA 39..180 165..317 169 29.7 Plus
Dyak\GE17539-PA 210 GE17539-PA 44..210 144..325 165 25.7 Plus
Dyak\GE10305-PA 176 GE10305-PA 32..175 165..320 159 27.2 Plus