BDGP Sequence Production Resources |
Search the DGRC for RE63660
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 636 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | hdly-RA |
Protein status: | RE63660.pep: gold |
Preliminary Size: | 1393 |
Sequenced Size: | 1397 |
Gene | Date | Evidence |
---|---|---|
CG5630 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5630 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5630 | 2003-01-22 | Blastp of sequenced clone |
CG5630 | 2008-04-29 | Release 5.5 accounting |
CG5630 | 2008-08-15 | Release 5.9 accounting |
CG5630 | 2008-12-18 | 5.12 accounting |
1397 bp (1397 high quality bases) assembled on 2003-01-22
GenBank Submission: AY075512
> RE63660.complete AGTGCAAAGTCGAAAATCTGGCGGTAAACACTGCTGTATCGCGATCCGCG AGAAAAACATAAAAAACAAAAGCAAAACAAAAAAACGAAAAAAGAAAAAA CAAACAAAAACCCGCCAGCCAACCGAAGGAGATGAATCGAACTTCGCTGT CCAGTGGCAGCACCAGCCGCAGACTTCCGGCTCTCTTGTTTGTCCTGCTG CTCTGCCTGGTGGCCAGGACCAACGGTCGTCCTTCGCAAGAGGACGAGAG CGACTTGGCCATCATTCCGCCGGATGCCGACAATGTGGAGATCCATAAGG TTAAAATAGTGAACGGTGTCATGCAAGAAGATCATCCGGTTATCATGTAC AAGGAGGACTTCGTCAGCGAGGATTATGATCCAACAAAAAGCGAAACAAA TCCTAGTCACCACAAGAAGCATAAGCGGACGCGGCTCCATCATGCAAAGC AAGTAACTGGAACAGAAAAGAAGGAGGACCAGATCCTTTTCGATATTCTG CCCGACAAGCCGATCGTCCTGGAAGAGGACCTCAAGGCTCTCCCACACAG CAAAGTTGGGGCTGCCCAACTGGCGGAACCCATCAAGGAAGAGTGGCTGG CTAAGCATCCCAAGAAGTACCACAGTCGCCAGCGACGACAGGCTCCTGTA AGCTTTGAGAAAGTCCTGCAATACTACTATGGCACTCCGGAAATAAAATT TGTGTCTCCCTTAACTTATACGCATTTTCGCATTTCAGTGAAGGGTAAGA AACCCCATCTGGTGGGGCCTCCGAATCGTAGGAATCAGGGCCAAGAGAAT ATCCCAACGCCAGACTCGGTCGATTCTAGAGGAGAATTCGATTTAATACA CAATTCAAATCAAGCGGATGCGGATTTCTCGATCTACAACCGTTCGTCTA CGACTACTGCCAGGCCAATCTTTCAAATCAATGATAGTGACTTTGTGACC TCGGCACCATCGTGGCGTCCGTCGAACAGCATACGCCGGCCGCCCCCCAC CCGCTCCCCCGTTGTGGGACTGCCCACCATGCGGCCCAACGCAAGGCCTG TCCCACAAACAGGGGGGGTCGATAGTGAGCCCAAGGTCAGCAGGTGTGTG TGGGCGATCGTCAACTGCTGCACGGGCGAGAGCAAGAAGGTGCGGTACAA CTGCTTCGAGGAGTTCGGATGCCATGGAGCCTTCTGGGACATCAATCCGT GTGCCGATGAGGGCGTGAAGCAAGGTGCGCTCACCAAGGTCCTGGACGCC TTCCAAAACCAATGAGCATTGAATTGATCCACTGACTTGCTCAGATTGTC TCAAACGCAAGCTTAATTTATTTTAAACATAGATTAAGTTATAGCATTTG TAAATATACACCACTAGCATTTGCATAACATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16751065..16751500 | 945..1380 | 2180 | 100 | Plus |
chr3R | 27901430 | chr3R | 16750222..16750568 | 378..724 | 1735 | 100 | Plus |
chr3R | 27901430 | chr3R | 16750635..16750855 | 725..945 | 1105 | 100 | Plus |
chr3R | 27901430 | chr3R | 16749800..16749980 | 110..290 | 905 | 100 | Plus |
chr3R | 27901430 | chr3R | 16738179..16738286 | 1..109 | 495 | 99.1 | Plus |
chr3R | 27901430 | chr3R | 16750041..16750130 | 289..378 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20927187..20927622 | 945..1380 | 2180 | 100 | Plus |
3R | 32079331 | 3R | 20926344..20926690 | 378..724 | 1735 | 100 | Plus |
3R | 32079331 | 3R | 20926757..20926977 | 725..945 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 20925922..20926102 | 110..290 | 905 | 100 | Plus |
3R | 32079331 | 3R | 20914301..20914408 | 1..109 | 495 | 99.1 | Plus |
3R | 32079331 | 3R | 20926163..20926252 | 289..378 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20668018..20668453 | 945..1380 | 2180 | 100 | Plus |
3R | 31820162 | 3R | 20667175..20667521 | 378..724 | 1735 | 100 | Plus |
3R | 31820162 | 3R | 20667588..20667808 | 725..945 | 1105 | 100 | Plus |
3R | 31820162 | 3R | 20666753..20666933 | 110..290 | 905 | 100 | Plus |
3R | 31820162 | 3R | 20655132..20655239 | 1..109 | 505 | 99 | Plus |
3R | 31820162 | 3R | 20666994..20667083 | 289..378 | 450 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 1148..1217 | 1272..1340 | 113 | 64.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16738179..16738228 | 1..50 | 100 | == | Plus |
chr3R | 16749385..16749396 | 68..79 | 100 | == | Plus |
chr3R | 16749800..16749980 | 110..290 | 100 | -> | Plus |
chr3R | 16750043..16750130 | 291..378 | 100 | -> | Plus |
chr3R | 16750223..16750568 | 379..724 | 100 | -> | Plus |
chr3R | 16750635..16750855 | 725..945 | 100 | -> | Plus |
chr3R | 16751066..16751500 | 946..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 1..1134 | 132..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 1..1134 | 132..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 1..1134 | 132..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 1..1134 | 132..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hdly-RA | 1..1134 | 132..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 1..1379 | 1..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 1..1379 | 1..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 6..1384 | 1..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5630-RA | 1..1379 | 1..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
hdly-RA | 6..1384 | 1..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20925922..20926102 | 110..290 | 100 | -> | Plus |
3R | 20926165..20926252 | 291..378 | 100 | -> | Plus |
3R | 20914301..20914408 | 1..109 | 99 | -> | Plus |
3R | 20926345..20926690 | 379..724 | 100 | -> | Plus |
3R | 20926757..20926977 | 725..945 | 100 | -> | Plus |
3R | 20927188..20927622 | 946..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20925922..20926102 | 110..290 | 100 | -> | Plus |
3R | 20926165..20926252 | 291..378 | 100 | -> | Plus |
3R | 20914301..20914408 | 1..109 | 99 | -> | Plus |
3R | 20926345..20926690 | 379..724 | 100 | -> | Plus |
3R | 20926757..20926977 | 725..945 | 100 | -> | Plus |
3R | 20927188..20927622 | 946..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20925922..20926102 | 110..290 | 100 | -> | Plus |
3R | 20926165..20926252 | 291..378 | 100 | -> | Plus |
3R | 20914301..20914408 | 1..109 | 99 | -> | Plus |
3R | 20926345..20926690 | 379..724 | 100 | -> | Plus |
3R | 20926757..20926977 | 725..945 | 100 | -> | Plus |
3R | 20927188..20927622 | 946..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16740023..16740130 | 1..109 | 99 | -> | Plus |
arm_3R | 16751887..16751974 | 291..378 | 100 | -> | Plus |
arm_3R | 16751644..16751824 | 110..290 | 100 | -> | Plus |
arm_3R | 16752067..16752412 | 379..724 | 100 | -> | Plus |
arm_3R | 16752479..16752699 | 725..945 | 100 | -> | Plus |
arm_3R | 16752910..16753344 | 946..1381 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20667176..20667521 | 379..724 | 100 | -> | Plus |
3R | 20667588..20667808 | 725..945 | 100 | -> | Plus |
3R | 20668019..20668453 | 946..1381 | 99 | Plus | |
3R | 20655132..20655239 | 1..109 | 99 | -> | Plus |
3R | 20666753..20666933 | 110..290 | 100 | -> | Plus |
3R | 20666996..20667083 | 291..378 | 100 | -> | Plus |
Translation from 0 to 1264
> RE63660.hyp VQSRKSGGKHCCIAIREKNIKNKSKTKNEKRKNKQKPASQPKEMNRTSLS SGSTSRRLPALLFVLLLCLVARTNGRPSQEDESDLAIIPPDADNVEIHKV KIVNGVMQEDHPVIMYKEDFVSEDYDPTKSETNPSHHKKHKRTRLHHAKQ VTGTEKKEDQILFDILPDKPIVLEEDLKALPHSKVGAAQLAEPIKEEWLA KHPKKYHSRQRRQAPVSFEKVLQYYYGTPEIKFVSPLTYTHFRISVKGKK PHLVGPPNRRNQGQENIPTPDSVDSRGEFDLIHNSNQADADFSIYNRSST TTARPIFQINDSDFVTSAPSWRPSNSIRRPPPTRSPVVGLPTMRPNARPV PQTGGVDSEPKVSRCVWAIVNCCTGESKKVRYNCFEEFGCHGAFWDINPC ADEGVKQGALTKVLDAFQNQ*
Translation from 131 to 1264
> RE63660.pep MNRTSLSSGSTSRRLPALLFVLLLCLVARTNGRPSQEDESDLAIIPPDAD NVEIHKVKIVNGVMQEDHPVIMYKEDFVSEDYDPTKSETNPSHHKKHKRT RLHHAKQVTGTEKKEDQILFDILPDKPIVLEEDLKALPHSKVGAAQLAEP IKEEWLAKHPKKYHSRQRRQAPVSFEKVLQYYYGTPEIKFVSPLTYTHFR ISVKGKKPHLVGPPNRRNQGQENIPTPDSVDSRGEFDLIHNSNQADADFS IYNRSSTTTARPIFQINDSDFVTSAPSWRPSNSIRRPPPTRSPVVGLPTM RPNARPVPQTGGVDSEPKVSRCVWAIVNCCTGESKKVRYNCFEEFGCHGA FWDINPCADEGVKQGALTKVLDAFQNQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17997-PA | 407 | GF17997-PA | 1..356 | 1..367 | 755 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24243-PA | 435 | GG24243-PA | 35..431 | 1..375 | 1538 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18388-PA | 513 | GH18388-PA | 23..435 | 26..374 | 601 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
hdly-PC | 377 | CG5630-PC | 1..377 | 1..377 | 2014 | 100 | Plus |
hdly-PA | 377 | CG5630-PA | 1..377 | 1..377 | 2014 | 100 | Plus |
hdly-PB | 445 | CG5630-PB | 1..371 | 1..371 | 1954 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10784-PA | 361 | GI10784-PA | 25..360 | 27..370 | 606 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24290-PA | 484 | GL24290-PA | 1..395 | 1..362 | 845 | 48.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19017-PA | 484 | GA19017-PA | 1..395 | 1..362 | 848 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15054-PA | 451 | GM15054-PA | 1..377 | 1..371 | 1738 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19387-PA | 454 | GD19387-PA | 1..380 | 1..371 | 1741 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14383-PA | 401 | GJ14383-PA | 1..386 | 1..359 | 688 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22477-PA | 411 | GK22477-PA | 25..320 | 31..363 | 533 | 38.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25698-PA | 453 | GE25698-PA | 1..376 | 1..368 | 1426 | 78.6 | Plus |