BDGP Sequence Production Resources |
Search the DGRC for RE63851
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 638 |
Well: | 51 |
Vector: | pFlc-1 |
Associated Gene/Transcript | MED20-RA |
Protein status: | RE63851.pep: gold |
Preliminary Size: | 835 |
Sequenced Size: | 1049 |
Gene | Date | Evidence |
---|---|---|
CG18780 | 2001-12-14 | Blastp of sequenced clone |
CG18267 | 2002-01-01 | Sim4 clustering to Release 2 |
CG18780 | 2003-01-01 | Sim4 clustering to Release 3 |
MED20 | 2008-04-29 | Release 5.5 accounting |
MED20 | 2008-08-15 | Release 5.9 accounting |
MED20 | 2008-12-18 | 5.12 accounting |
1049 bp (1049 high quality bases) assembled on 2001-12-14
GenBank Submission: BT003473
> RE63851.complete ACTGGTCACACTGGACGCTTTTAGCTTGCAAGACTTGTAAACAAAATTAA TAAAACTAAAAAGCTGACATTATTGCATAAACTATGGGAGTAACTATCCT TCAACCGTATCCCTTACCCGAAGGCAAATCGGGTGCCCACATAATCGATC AGCTGAGCAAGCGTCTGCTCGCCCTGGGCGCCACACATGCCGGTCAATTT CTGGTGGACTGCGAAACGTTCATCTCGACGCCACAGCCGCACAATGGAGC ACCTGGACGCGCAGTCCACGTCCTGCACAACTCCGAGTATCCCGCCTCCA CGTTCTCGATCATCGACAATGGCACCGGCAAACAAGTGGCCATTGTCGCC GACAATATCTTCGATCTGCTCATGCTCAAGATGACCAACACCTTCACCTC CAAAAAGCAGACCAAAATCGAGTCCCGTGGCGCTCGTTTCGAGTATGGTG ACTTTGTTATCAAACTCGGTTCCGTCACCATGATGGAGCACTTCAAGGGC ATCCTCATCGAAATCGAGTACAAGTCATGCGTGATTCTGGCCTACTGCTG GGAAATGATACGCGAAATGCTGCAGGGATTCCTCGGCATTGCTGTGAATA AGGACTTTCCCTCCTATTTCGCTCCACAGACAATAATGACGGCAATGGGG CAACAGCAGCTGCATGCCAAGCACAACGACATCTTTGAGCCAATGGACAC CGTGAAACAATACCTGGAGCAGTTCACCAACTATAGGAAGCATGTGACTC TTATGGGCGGTATGGGCAGTGGACCGGGTAGCCAACAGGTTGGTCCGAAC GTGCATATGTCGCCGGCGGTGGCGGGACTACATCGATCCTGATCCGCCGA CGTCAAGCTGGAGCCACCGGATGAGCCTGCAGCCGATTAAGATGTTTAGA AGATAATTTAAACAAAAAAAATATACATATGTCACTAATATTTAATAATT AAATAATCATTATTTTAAAGCTAGCATCACTAGTTTGCTTTACATATTTT AGACGAATAAACAAAACATTTATTAGCTTGTCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED20-RA | 1036 | MED20-RA | 1..1036 | 1..1036 | 5180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 8070800..8071832 | 1033..1 | 5165 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8071809..8072844 | 1036..1 | 5180 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 8071809..8072844 | 1036..1 | 5180 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 8070800..8071832 | 1..1033 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 1..759 | 84..842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 1..759 | 84..842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RB | 1..807 | 84..890 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 1..759 | 84..842 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RB | 1..807 | 84..890 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 1..1033 | 1..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 1..1033 | 1..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 5..1037 | 1..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 1..1033 | 1..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED20-RA | 5..1037 | 1..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8071812..8072844 | 1..1033 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8071812..8072844 | 1..1033 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8071812..8072844 | 1..1033 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 8071812..8072844 | 1..1033 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 8071812..8072844 | 1..1033 | 100 | Minus |
Translation from 83 to 841
> RE63851.hyp MGVTILQPYPLPEGKSGAHIIDQLSKRLLALGATHAGQFLVDCETFISTP QPHNGAPGRAVHVLHNSEYPASTFSIIDNGTGKQVAIVADNIFDLLMLKM TNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIEYKSCV ILAYCWEMIREMLQGFLGIAVNKDFPSYFAPQTIMTAMGQQQLHAKHNDI FEPMDTVKQYLEQFTNYRKHVTLMGGMGSGPGSQQVGPNVHMSPAVAGLH RS*
Translation from 83 to 841
> RE63851.pep MGVTILQPYPLPEGKSGAHIIDQLSKRLLALGATHAGQFLVDCETFISTP QPHNGAPGRAVHVLHNSEYPASTFSIIDNGTGKQVAIVADNIFDLLMLKM TNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIEYKSCV ILAYCWEMIREMLQGFLGIAVNKDFPSYFAPQTIMTAMGQQQLHAKHNDI FEPMDTVKQYLEQFTNYRKHVTLMGGMGSGPGSQQVGPNVHMSPAVAGLH RS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22602-PA | 246 | GF22602-PA | 1..245 | 1..251 | 1177 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23479-PA | 252 | GG23479-PA | 1..251 | 1..251 | 1317 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12797-PA | 250 | GH12797-PA | 1..250 | 1..252 | 1060 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED20-PB | 268 | CG18780-PB | 1..252 | 1..252 | 1322 | 100 | Plus |
MED20-PA | 252 | CG18780-PA | 1..252 | 1..252 | 1322 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15952-PA | 246 | GI15952-PA | 1..231 | 1..233 | 1062 | 83.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19867-PA | 256 | GL19867-PA | 1..242 | 1..245 | 1137 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28197-PA | 256 | GA28197-PA | 1..242 | 1..245 | 1140 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13189-PA | 252 | GM13189-PA | 1..251 | 1..251 | 1333 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22443-PA | 252 | GD22443-PA | 1..251 | 1..251 | 1342 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18844-PA | 246 | GJ18844-PA | 1..246 | 1..252 | 1076 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16399-PA | 253 | GK16399-PA | 1..241 | 1..245 | 1077 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11200-PA | 252 | GE11200-PA | 1..251 | 1..251 | 1242 | 95.6 | Plus |