RE63889.complete Sequence
913 bp (913 high quality bases) assembled on 2004-11-04
GenBank Submission: BT021248
> RE63889.complete
ATTGAGATTATTCACTCATCAAATAATATTGTAGAAAAAATGAAGGAGTC
TAGAAATCTTGAAAACTTTGTGGAAAAAAAGCTCTATGAATGCAAAAAGA
AGTATGTTGACATTCCAAAGGACGAGGGACAACGATATGGAACCAGAGTC
CTACTGGCTGAATCCGCTCTCATTCATTTTAGCCGATATGTTCGACGACT
TGGCGGAGAACTTAAGGCGGGGAGTTATTACCTTTTTTTGGGACCCCGAG
CTGAACATGATCGACGCATTGACCCGGGATCAAGTTTGGGAAATGTACCT
GTGCGTGCAAAGGATTCCAAGAGACCTGAGGGGCGCAGAGATCAGCCGGA
ATAAATGGAGTTTTTTCGTACTTCGGGAATTCAGTCACAAAAAGGAAAGA
AATGTAAATCTAAAGTGCAGCTCTAGGCGAAAACGAAATGTTATTAAGGG
ACTGAAGACCACTTCAATTTGCAAGCTAAGAAATGCTCGAACTAACGGTA
CCTGGACTGCTGGACTTTGGACTCGACCCGGCCATGCGTACAGAGGCCCA
TCGGAAACGGTGTCGACTTGGGACACAGTAAAGGACGCAGCGTGGTCAGA
AGGGATTGTGGAGTAAGTGGATAGTGTCCTGCGACACGAGCGGTCCTAAC
AGACGTGCGCTTCCGGGTGGTTGCAAAGGTGGTTCTGGGAAGAGCATTGA
TTCGCAATAATGGAAGTTCTCTAATCTCAGTGCAATTTACATATGTACTC
TCCAGCAATTGTTGAATGCACTTTAGTAGTAATAAGAGGAAAATTAAATG
GCACGCTCTATTTTTTGCCCAAGTTATGTTACAACAATCTATATTGATAA
TTTGGTGCAAAACTAAAAAAAAATAAAACAATGTTGAATATTTTGCCAAA
AAAAAAAAAAAAA
RE63889.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30424-RB | 912 | CG30424-RB | 13..910 | 1..898 | 4475 | 99.8 | Plus |
CG30424-RC | 1033 | CG30424-RC | 266..1025 | 139..898 | 3800 | 100 | Plus |
CG30424.a | 965 | CG30424.a | 204..963 | 139..898 | 3800 | 100 | Plus |
CG30424-RC | 1033 | CG30424-RC | 32..171 | 1..140 | 685 | 99.2 | Plus |
CG30424.a | 965 | CG30424.a | 30..168 | 1..139 | 680 | 99.2 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 20851242..20851755 | 897..384 | 2555 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 20851811..20852008 | 385..188 | 990 | 100 | Minus |
chr2R | 21145070 | chr2R | 20853113..20853252 | 140..1 | 670 | 98.6 | Minus |
chr2R | 21145070 | chr2R | 20852073..20852121 | 187..139 | 245 | 100 | Minus |
chr3LHet | 2555433 | chr3LHet | 1230047..1230116 | 624..693 | 200 | 85.7 | Plus |
chr3LHet | 2555433 | chr3LHet | 739904..739965 | 699..638 | 190 | 87.1 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:09:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24965274..24965788 | 898..384 | 2575 | 100 | Minus |
2R | 25286936 | 2R | 24965844..24966041 | 385..188 | 990 | 100 | Minus |
2R | 25286936 | 2R | 24967146..24967285 | 140..1 | 685 | 99.3 | Minus |
2R | 25286936 | 2R | 24966106..24966154 | 187..139 | 245 | 100 | Minus |
3L | 28110227 | 3L | 25847391..25847460 | 624..693 | 200 | 85.7 | Plus |
3L | 28110227 | 3L | 25254426..25254487 | 699..638 | 190 | 87.1 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 24966473..24966987 | 898..384 | 2575 | 100 | Minus |
2R | 25260384 | 2R | 24967043..24967240 | 385..188 | 990 | 100 | Minus |
2R | 25260384 | 2R | 24968345..24968484 | 140..1 | 685 | 99.2 | Minus |
2R | 25260384 | 2R | 24967305..24967353 | 187..139 | 245 | 100 | Minus |
3L | 28103327 | 3L | 25840491..25840560 | 624..693 | 200 | 85.7 | Plus |
3L | 28103327 | 3L | 25247526..25247587 | 699..638 | 190 | 87 | Minus |
Blast to na_te.dros performed on 2019-03-16 12:43:55 has no hits.
RE63889.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:44:43 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 20851242..20851755 | 384..897 | 99 | <- | Minus |
chr2R | 20851813..20852008 | 188..383 | 100 | <- | Minus |
chr2R | 20852073..20852120 | 140..187 | 100 | <- | Minus |
chr2R | 20853114..20853252 | 1..139 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:11 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..531 | 86..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:28:30 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..531 | 86..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:51:12 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..531 | 86..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:28 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..531 | 86..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:19 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..531 | 86..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:01 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..897 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:28:30 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..897 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:51:12 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 14..910 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:28 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 1..897 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:19 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30424-RB | 14..910 | 1..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:43 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24965275..24965788 | 384..897 | 100 | <- | Minus |
2R | 24965846..24966041 | 188..383 | 100 | <- | Minus |
2R | 24966106..24966153 | 140..187 | 100 | <- | Minus |
2R | 24967147..24967285 | 1..139 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:43 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24965275..24965788 | 384..897 | 100 | <- | Minus |
2R | 24965846..24966041 | 188..383 | 100 | <- | Minus |
2R | 24966106..24966153 | 140..187 | 100 | <- | Minus |
2R | 24967147..24967285 | 1..139 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:44:43 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24965275..24965788 | 384..897 | 100 | <- | Minus |
2R | 24965846..24966041 | 188..383 | 100 | <- | Minus |
2R | 24966106..24966153 | 140..187 | 100 | <- | Minus |
2R | 24967147..24967285 | 1..139 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:51:12 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20852798..20853311 | 384..897 | 100 | <- | Minus |
arm_2R | 20853369..20853564 | 188..383 | 100 | <- | Minus |
arm_2R | 20853629..20853676 | 140..187 | 100 | <- | Minus |
arm_2R | 20854670..20854808 | 1..139 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:06 Download gff for
RE63889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24968364..24968502 | 1..139 | 99 | | Minus |
2R | 24966492..24967005 | 384..897 | 100 | <- | Minus |
2R | 24967063..24967258 | 188..383 | 100 | <- | Minus |
2R | 24967323..24967370 | 140..187 | 100 | <- | Minus |
RE63889.pep Sequence
Translation from 85 to 615
> RE63889.pep
MNAKRSMLTFQRTRDNDMEPESYWLNPLSFILADMFDDLAENLRRGVITF
FWDPELNMIDALTRDQVWEMYLCVQRIPRDLRGAEISRNKWSFFVLREFS
HKKERNVNLKCSSRRKRNVIKGLKTTSICKLRNARTNGTWTAGLWTRPGH
AYRGPSETVSTWDTVKDAAWSEGIVE*
RE63889.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11519-PA | 419 | GF11519-PA | 306..362 | 20..75 | 168 | 52.6 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19870-PA | 354 | GG19870-PA | 267..349 | 19..100 | 244 | 60.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30424-PB | 176 | CG30424-PB | 1..176 | 1..176 | 948 | 100 | Plus |
CG30424-PE | 188 | CG30424-PE | 1..188 | 1..176 | 925 | 93.6 | Plus |
CG30424-PD | 389 | CG30424-PD | 232..389 | 19..176 | 856 | 100 | Plus |
CG30424-PC | 142 | CG30424-PC | 1..142 | 35..176 | 768 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL10891-PA | 382 | GL10891-PA | 297..367 | 19..89 | 197 | 49.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA15837-PA | 382 | GA15837-PA | 297..367 | 19..89 | 197 | 49.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24904-PA | 383 | GD24904-PA | 265..357 | 2..100 | 350 | 72.7 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11395-PA | 413 | GE11395-PA | 300..403 | 19..123 | 287 | 57.5 | Plus |
RE63889.hyp Sequence
Translation from 85 to 615
> RE63889.hyp
MNAKRSMLTFQRTRDNDMEPESYWLNPLSFILADMFDDLAENLRRGVITF
FWDPELNMIDALTRDQVWEMYLCVQRIPRDLRGAEISRNKWSFFVLREFS
HKKERNVNLKCSSRRKRNVIKGLKTTSICKLRNARTNGTWTAGLWTRPGH
AYRGPSETVSTWDTVKDAAWSEGIVE*
RE63889.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30424-PB | 176 | CG30424-PB | 1..176 | 1..176 | 948 | 100 | Plus |
CG30424-PE | 188 | CG30424-PE | 1..188 | 1..176 | 925 | 93.6 | Plus |
CG30424-PD | 389 | CG30424-PD | 232..389 | 19..176 | 856 | 100 | Plus |
CG30424-PC | 142 | CG30424-PC | 1..142 | 35..176 | 768 | 100 | Plus |