Clone RE64060 Report

Search the DGRC for RE64060

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:640
Well:60
Vector:pFlc-1
Associated Gene/TranscriptCG18585-RA
Protein status:RE64060.pep: gold
Sequenced Size:1369

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18585 2003-01-01 Sim4 clustering to Release 3
CG18585 2004-08-13 Blastp of sequenced clone
CG18585 2008-04-29 Release 5.5 accounting
CG18585 2008-08-15 Release 5.9 accounting
CG18585 2008-12-18 5.12 accounting

Clone Sequence Records

RE64060.complete Sequence

1369 bp (1369 high quality bases) assembled on 2004-08-13

GenBank Submission: BT015981

> RE64060.complete
AGTCATTGCTCAAAATGCGTCTGCTTTGGTTGCTTGCCACGCTGGTGGCT
CTAACAAGTGCTGGTATCCTTAAGGACTCTCCCAAAGAGCGTTATGATAA
CTTCAGGGTATACAAGCTCACTATCCAGAACAAAATTCAATTGGCTGCGA
TCGAGAAAATTGGCGAGCTAACGAAGAAGTACAATATTTGGAAGGAGTAT
GACGAGCGAAGTAGGCAGATTGATATTATGGTTAGTCCTGGAGAACTTAA
CCACTTTCAGGAGCTGCTTAAATTCAATAATATCAGCAGTGAGCTTATGA
TCGAGAATGTCCAAGAGCGTATCGACGAGGAGCAAGTCACGCCGACTGCA
GATAGCGCCACCTTCGGCTGGACGAAGTACTACGAGCTGGAAGAGATTGA
GGCCTGGCTGGACGAGATTCTAAATGCTTATCCCTCGGTGACCGAGGAGT
TCATTGTTGGCAAGTCCTACGAGGGGAGAACCATTAGAGGCATTAAGATC
TCCCACAAGGCTGGCAATCCTGGCATTTTCATCGAGTCCAACATTCATGC
CAGAGAATGGATAACTTCGGCCAGTGCTACATGGTTCATCAATCAGCTTT
TGACCTCAGAGGATGCCGATGTGCGAAGTTTGGCCGATAACTATGATTGG
CATATAATTCCCGTGTTCAATGTAGATGGTTTTGAGTACTCACACAAGAA
GGATCGTATGTGGCGCAAAACACGTCAGCCACATGCCACGAATGCATGCA
TTGGAGCTGACGCCAATAGGAACTTCGACTCCTATTGGCTCCAGAACAAT
GGAGCCTCTGACAATCCCTGCAGTGAGACTTTTGCTGGGGATAACCCTGA
ATCTGAGCCTGAAGCCAAGGCCTTGGTCGAGTACTTGACCAAAATCCAGG
ACCAAATTAGTGTGTACATATCCTTCCACTCATATGGACAGTATTTGCTT
TCGCCCTACGGTCATACCAATGAGGAGTTCCCAGAAAATTACAATGATAT
CCTGACTATTGGCAAAGCTTTTGCCGATGCCATTGAAGCACTGCCGTACG
GAACCGTCTACCAGTATGGCTCTACAGCTGATGTGCTTTATGTGGCCACT
GGAACCTCCGTGGACTGGGTGTTCAACGAGCTGGGCAAGAAGATCGGTTA
CACAATCGAGTACCGTGATAAGGGTCGCTACGGCTTTATCCTGCCACCAG
TGCAGATCATTCCCAACTGCGAGGAGCTAATGGTTGGAATGCTGGCTTTA
ATTGAAAAGACCAAGGAGTTGGGCTACTTGTAAGAGCACGATTTATTTAT
CCCGAATTTATGATTTATTCGTGTTCATTAAAATACTTAACATAAGAGGC
CACCAAAAAAAAAAAAAAA

RE64060.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-RA 1377 CG18585-RA 24..1375 1..1352 6760 100 Plus
Myo28B1-RE 3559 Myo28B1-RE 3473..3559 1357..1271 420 98.8 Minus
Myo28B1-RB 6443 Myo28B1-RB 6357..6443 1357..1271 420 98.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7688812..7689201 1089..700 1905 99.2 Minus
chr2L 23010047 chr2L 7689263..7689648 702..317 1885 99.2 Minus
chr2L 23010047 chr2L 7688470..7688732 1352..1090 1285 99.2 Minus
chr2L 23010047 chr2L 7689971..7690149 179..1 895 100 Minus
chr2L 23010047 chr2L 7689774..7689914 317..177 705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:09:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7689720..7690109 1089..700 1950 100 Minus
2L 23513712 2L 7690171..7690556 702..317 1930 100 Minus
2L 23513712 2L 7689373..7689640 1357..1090 1325 99.6 Minus
2L 23513712 2L 7690879..7691057 179..1 895 100 Minus
2L 23513712 2L 7690682..7690821 317..178 700 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7689720..7690109 1089..700 1950 100 Minus
2L 23513712 2L 7690171..7690556 702..317 1930 100 Minus
2L 23513712 2L 7689373..7689640 1357..1090 1325 99.6 Minus
2L 23513712 2L 7690879..7691057 179..1 895 100 Minus
2L 23513712 2L 7690682..7690821 317..178 700 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:30:22 has no hits.

RE64060.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:31:25 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7688468..7688732 1090..1354 98 <- Minus
chr2L 7688812..7689199 702..1089 99 <- Minus
chr2L 7689264..7689648 317..701 99 <- Minus
chr2L 7689775..7689911 180..316 100 <- Minus
chr2L 7689971..7690149 1..179 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:21 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1269 15..1283 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:56 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1269 15..1283 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:12 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1269 15..1283 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:45 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1269 15..1283 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:14 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1269 15..1283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:38:21 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1354 1..1354 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:56 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1354 1..1354 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:12 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 5..1358 1..1354 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:46 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 1..1354 1..1354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:14 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
CG18585-RA 5..1358 1..1354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:25 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7689376..7689640 1090..1354 99 <- Minus
2L 7689720..7690107 702..1089 100 <- Minus
2L 7690172..7690556 317..701 100 <- Minus
2L 7690683..7690819 180..316 100 <- Minus
2L 7690879..7691057 1..179 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:25 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7689376..7689640 1090..1354 99 <- Minus
2L 7689720..7690107 702..1089 100 <- Minus
2L 7690172..7690556 317..701 100 <- Minus
2L 7690683..7690819 180..316 100 <- Minus
2L 7690879..7691057 1..179 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:25 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7689376..7689640 1090..1354 99 <- Minus
2L 7689720..7690107 702..1089 100 <- Minus
2L 7690172..7690556 317..701 100 <- Minus
2L 7690683..7690819 180..316 100 <- Minus
2L 7690879..7691057 1..179 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:12 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7689376..7689640 1090..1354 99 <- Minus
arm_2L 7689720..7690107 702..1089 100 <- Minus
arm_2L 7690172..7690556 317..701 100 <- Minus
arm_2L 7690683..7690819 180..316 100 <- Minus
arm_2L 7690879..7691057 1..179 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:47 Download gff for RE64060.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7690683..7690819 180..316 100 <- Minus
2L 7690879..7691057 1..179 100   Minus
2L 7689376..7689640 1090..1354 99 <- Minus
2L 7689720..7690107 702..1089 100 <- Minus
2L 7690172..7690556 317..701 100 <- Minus

RE64060.hyp Sequence

Translation from 2 to 1282

> RE64060.hyp
SLLKMRLLWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAAI
EKIGELTKKYNIWKEYDERSRQIDIMVSPGELNHFQELLKFNNISSELMI
ENVQERIDEEQVTPTADSATFGWTKYYELEEIEAWLDEILNAYPSVTEEF
IVGKSYEGRTIRGIKISHKAGNPGIFIESNIHAREWITSASATWFINQLL
TSEDADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPHATNACI
GADANRNFDSYWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQD
QISVYISFHSYGQYLLSPYGHTNEEFPENYNDILTIGKAFADAIEALPYG
TVYQYGSTADVLYVATGTSVDWVFNELGKKIGYTIEYRDKGRYGFILPPV
QIIPNCEELMVGMLALIEKTKELGYL*

RE64060.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PB 422 CG18585-PB 1..422 5..426 2230 100 Plus
CG18585-PA 422 CG18585-PA 1..422 5..426 2230 100 Plus
CG7025-PA 429 CG7025-PA 1..423 3..426 1304 54.7 Plus
CG14820-PA 416 CG14820-PA 2..416 10..426 952 45.2 Plus
CG12374-PA 422 CG12374-PA 1..419 5..424 790 38.6 Plus

RE64060.pep Sequence

Translation from 14 to 1282

> RE64060.pep
MRLLWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAAIEKIG
ELTKKYNIWKEYDERSRQIDIMVSPGELNHFQELLKFNNISSELMIENVQ
ERIDEEQVTPTADSATFGWTKYYELEEIEAWLDEILNAYPSVTEEFIVGK
SYEGRTIRGIKISHKAGNPGIFIESNIHAREWITSASATWFINQLLTSED
ADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPHATNACIGADA
NRNFDSYWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQDQISV
YISFHSYGQYLLSPYGHTNEEFPENYNDILTIGKAFADAIEALPYGTVYQ
YGSTADVLYVATGTSVDWVFNELGKKIGYTIEYRDKGRYGFILPPVQIIP
NCEELMVGMLALIEKTKELGYL*

RE64060.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14015-PA 351 GF14015-PA 1..351 72..422 1617 82.9 Plus
Dana\GF14014-PA 428 GF14014-PA 5..423 4..422 1282 54.7 Plus
Dana\GF23551-PA 416 GF23551-PA 22..416 26..422 949 47.8 Plus
Dana\GF23552-PA 416 GF23552-PA 8..416 10..422 948 47.5 Plus
Dana\GF22810-PA 427 GF22810-PA 26..425 26..422 773 40.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23519-PA 422 GG23519-PA 1..422 1..422 2172 94.8 Plus
Dere\GG23518-PA 429 GG23518-PA 28..423 26..422 1286 56.6 Plus
Dere\GG14391-PA 416 GG14391-PA 2..416 6..422 937 44.8 Plus
Dere\GG20336-PA 422 GG20336-PA 1..419 1..420 757 37.2 Plus
Dere\GG10055-PA 429 GG10055-PA 7..428 3..422 755 37.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10072-PA 421 GH10072-PA 1..421 1..422 1621 69.2 Plus
Dgri\GH10071-PA 430 GH10071-PA 1..424 1..422 1236 54 Plus
Dgri\GH15366-PA 440 GH15366-PA 21..432 7..420 1000 48.4 Plus
Dgri\GH21762-PA 423 GH21762-PA 27..420 26..420 750 37.5 Plus
Dgri\GH25146-PA 426 GH25146-PA 20..425 19..422 743 38.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18585-PB 422 CG18585-PB 1..422 1..422 2230 100 Plus
CG18585-PA 422 CG18585-PA 1..422 1..422 2230 100 Plus
CG7025-PA 429 CG7025-PA 8..423 6..422 1303 55.4 Plus
CG14820-PA 416 CG14820-PA 2..416 6..422 952 45.2 Plus
CG12374-PA 422 CG12374-PA 1..419 1..420 790 38.6 Plus
CG17633-PA 430 CG17633-PA 8..428 6..421 735 37.8 Plus
CG2915-PA 453 CG2915-PA 17..451 5..421 714 36.1 Plus
CG2915-PB 453 CG2915-PB 17..451 5..421 714 36.1 Plus
CG4017-PA 424 CG4017-PA 1..421 1..421 704 36.2 Plus
CG8562-PA 424 CG8562-PA 9..423 3..419 600 34.5 Plus
CG3097-PA 445 CG3097-PA 6..418 3..395 586 32.7 Plus
CG8560-PB 418 CG8560-PB 1..416 3..418 583 34.3 Plus
CG8560-PA 418 CG8560-PA 1..416 3..418 583 34.3 Plus
CG4408-PB 467 CG4408-PB 63..465 21..421 581 32.4 Plus
CG4408-PA 479 CG4408-PA 75..477 21..421 581 32.4 Plus
CG3108-PA 1132 CG3108-PA 722..1090 26..394 574 35.1 Plus
CG18417-PA 427 CG18417-PA 1..419 1..415 548 33.3 Plus
CG32379-PB 344 CG32379-PB 44..334 122..412 500 36.4 Plus
CG8945-PC 1430 CG8945-PC 981..1430 27..413 465 29.1 Plus
CG8563-PB 440 CG8563-PB 143..434 119..413 429 32.2 Plus
CG8563-PA 440 CG8563-PA 143..434 119..413 429 32.2 Plus
CG42264-PB 521 CG42264-PB 144..509 69..405 421 26.1 Plus
CG42264-PA 634 CG42264-PA 257..622 69..405 421 26.1 Plus
CG8539-PB 385 CG8539-PB 38..338 122..418 343 31.4 Plus
CG8539-PA 385 CG8539-PA 38..338 122..418 343 31.4 Plus
CG8564-PA 504 CG8564-PA 38..344 122..399 300 27 Plus
CG8564-PC 520 CG8564-PC 54..360 122..399 300 27 Plus
CG4678-PL 474 CG4678-PL 72..262 122..327 174 28.2 Plus
CG4678-PI 513 CG4678-PI 72..262 122..327 174 28.2 Plus
CG4678-PF 479 CG4678-PF 72..258 122..323 173 28.7 Plus
CG4678-PD 518 CG4678-PD 72..258 122..323 173 28.7 Plus
CG4678-PG 488 CG4678-PG 72..253 122..318 170 28.9 Plus
CG4678-PJ 523 CG4678-PJ 72..253 122..318 170 28.9 Plus
CG4678-PE 527 CG4678-PE 72..253 122..318 170 28.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16517-PA 421 GI16517-PA 1..421 1..422 1592 67.3 Plus
Dmoj\GI16514-PA 434 GI16514-PA 24..425 20..422 1239 53.8 Plus
Dmoj\GI12969-PA 416 GI12969-PA 22..416 26..422 933 46.5 Plus
Dmoj\GI12968-PA 416 GI12968-PA 22..416 26..422 925 46.8 Plus
Dmoj\GI12970-PA 416 GI12970-PA 3..416 7..422 917 43.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18860-PA 429 GL18860-PA 20..423 16..422 1249 54.9 Plus
Dper\GL13278-PA 358 GL13278-PA 54..358 119..422 822 51.1 Plus
Dper\GL18934-PA 425 GL18934-PA 24..424 24..422 734 39.3 Plus
Dper\GL17014-PA 425 GL17014-PA 29..422 26..420 717 37.7 Plus
Dper\GL18933-PA 426 GL18933-PA 23..423 27..421 711 37.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15002-PA 423 GA15002-PA 1..423 1..422 1889 81.8 Plus
Dpse\GA20041-PA 429 GA20041-PA 7..423 3..422 1264 54.6 Plus
Dpse\GA13272-PA 416 GA13272-PA 2..416 6..422 960 46.6 Plus
Dpse\GA14587-PA 425 GA14587-PA 24..424 24..422 736 39.3 Plus
Dpse\GA11590-PA 425 GA11590-PA 29..422 26..420 721 37.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13467-PA 422 GM13467-PA 1..422 1..422 2212 97.6 Plus
Dsec\GM13458-PA 429 GM13458-PA 6..423 4..422 1304 54.6 Plus
Dsec\GM14804-PA 416 GM14804-PA 2..416 6..422 948 44.8 Plus
Dsec\GM17686-PA 424 GM17686-PA 1..421 1..421 719 36.9 Plus
Dsec\GM17695-PA 429 GM17695-PA 8..428 6..422 719 37.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22482-PA 422 GD22482-PA 1..422 1..422 2219 98.1 Plus
Dsim\GD22481-PA 429 GD22481-PA 6..423 4..422 1314 54.9 Plus
Dsim\GD10919-PA 422 GD10919-PA 1..419 1..420 758 37.2 Plus
Dsim\GD23629-PA 430 GD23629-PA 8..429 6..422 741 38.1 Plus
Dsim\GD23628-PA 424 GD23628-PA 1..421 1..421 711 36.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16228-PA 421 GJ16228-PA 1..421 1..422 1654 69.2 Plus
Dvir\GJ16227-PA 430 GJ16227-PA 1..425 1..422 1289 54.9 Plus
Dvir\GJ13115-PA 416 GJ13115-PA 22..416 26..422 959 47 Plus
Dvir\GJ13502-PA 426 GJ13502-PA 20..425 19..422 772 40.3 Plus
Dvir\GJ22186-PA 421 GJ22186-PA 25..418 26..420 767 38.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23955-PA 429 GK23955-PA 17..429 15..422 1685 75.1 Plus
Dwil\GK23954-PA 425 GK23954-PA 25..419 26..422 1279 58 Plus
Dwil\GK23953-PA 418 GK23953-PA 7..418 4..422 1174 50.2 Plus
Dwil\GK23952-PA 418 GK23952-PA 7..418 4..422 1164 50.5 Plus
Dwil\GK12561-PA 417 GK12561-PA 4..417 7..422 956 45.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18345-PA 422 GE18345-PA 1..422 1..422 2184 96 Plus
Dyak\GE18344-PA 429 GE18344-PA 28..423 26..422 1286 56.4 Plus
Dyak\GE21580-PA 409 GE21580-PA 15..409 26..422 913 45 Plus
Dyak\GE12495-PA 422 GE12495-PA 1..419 1..420 772 38.4 Plus
Dyak\GE18869-PA 430 GE18869-PA 7..429 3..422 746 37.3 Plus