BDGP Sequence Production Resources |
Search the DGRC for RE64116
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 641 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Gclc-RA |
Protein status: | RE64116.pep: gold |
Preliminary Size: | 2154 |
Sequenced Size: | 3438 |
Gene | Date | Evidence |
---|---|---|
CG2259 | 2001-12-14 | Blastp of sequenced clone |
CG2259 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2259 | 2003-01-01 | Sim4 clustering to Release 3 |
Gclc | 2008-04-29 | Release 5.5 accounting |
Gclc | 2008-08-15 | Release 5.9 accounting |
Gclc | 2008-12-18 | 5.12 accounting |
3438 bp (3438 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071586
> RE64116.complete ATTCAAAATTTGTATTTAAAGTGGAGCGTTTTATTGTTTTGGGCATTCGT TAGTGTTAATAACACTGTTTACGTCGACGGAGAATTTGGCGGCAAAGGAA ACGCAATACCAAAGTCGCGTTTAAAGAAATTACAAATATACAAAATAAAT ACGAAACACACACACACCAACACACATCGCAACACCAAAAACATAATAAG GAAATAGTGAGAGCGCAAAAACAGCGGTAAATTCGGCAAATAACGTTACA CAACCCACCAAAACTGCAGCGAGAGAGCGGCAGAGAGCGAAACAGAGTGA CGAAGAACAAAAAGCAGCAATGGGTCTACTGAGCGAGGGCAGTCCACTCT CCTGGGAGGAGACCAAGGCGCTGGCTGATCATGTGCGTGAGCATGGCGTC AATCAGTTCATCAACTTGTACCACAGACTCAAGGATCGCCAGGGTGACAT ATTGAAATGGGGCGACGAGGTGGAGTACATTATTGTCAAGTTCGACGATG AACAGAAGGTGGCACGTGTGGCGCTGCGCGCCCAGGATCTGCTGGCACAG CTCAATGAGAAGGAACTGGCCGATCCCAATGGTGTCAAGTCGCTGTGGCG TCCGGAATACGGAGCCTACATGATTGAGGGCACACCGGGCAAACCCTTTG GCGGTCTGATGGCACACTTCAATCTGGTTGAGGCCAATATGCGCTATCGT CGCGAAGAGGTCACCGAGCTGCTGGCCAAGGACGAGTGCGTTATGTCCAT TACGAATTTCCCACGACTCGGCGCACCAAATTTCACTTATCCGCTTGCCC AGCCGCGTCCCGAGGATCCTCTCAGTTCAGCCCGCTCGCTCTACTTCCCG GATGAGGCCATCTTTCCGGGTCACCCGCGTTTCAAGACACTCACGCGTAA CATTCGCAAGCGACGCGGCGAGAAGGTGTCCATCAAGCTAAAAGTTTTCA AGGACACAAAGACGAAGCTACCGGTGGAGGGTGCTCCGCCTGGCGAACCG GATGTGGTGCTCCTGGACGCCATGGGCTTCGGCATGGGCTGCTGTTGCTT GCAGCTCACCTTCCAGGCCTGTAACATTACGGAGGCGCGTCGCCTCTACG ATCAGCTGGCTCCCCTCTGTCCGATCATGTTGGCTCTGACGGCCGCTTCG CCCATTTACAGGGGCTATCTAACCGAATCAGATTGTCGATGGAATGTGAT TAGCTCCTCGGTGGATTGCCGCACGGAAGAGGAACGCGGACTGGCGCCGC TGGATCAGCAAAAGTTCAGGATAGCCAAGTCGCGATACGATTCGATTGAC TCGTATTTGTCGCCCGAGGGAGCCAAATATAACGATGTACCGCTCACATA CGATGAGAAGGTCTATCAGCGTCTGGTGGAGGGCGGTATCGATCATCTGT TGGCCCAGCATGTTGCCCATTTGTTTATACGCGACACCGTGTCGCTGTTC AGCGAGAAGGTGCATCAAAACGACAACGAGGATACGGATCATTTCGAGAA CATTCAGTCCACCAATTGGCAGACCATGCGCTTCAAGCCGCCGCCACCGA ACAGCTCCATTGGCTGGCGTGTCGAGTTTCGACCTTGCGAGGCGCAGATC AGTGATTTCGAGAATGCGGCCATCGTGTGCTTTGTGGTGCTGCTCACCCG TGTGATTCTCTCCTACCAGCTGAACTTCCTAACGCCGATCAGCAAGGTGG ACGAGAACATGCAGACGGCCCAGAAGCGAGATGCTTGTCGCAAGGAGAAG TTTTGGTTCCGCAAATCCTCGAAGACCACCGAGCAGAGGGCGGCCAAGGC GCAGGCACAAGCTCAAGCGCAAGCTAAAGCCCAGGCCCAGACGAATGGCA AGGCCACTTTGAATGGCAATGGACTGGCGAATGGAAATGGGAATGGCAGC GAGAACAGTGACCAGGAAGAGCAGCAGCCTCTGACCAACGGTTCGGCCAA GATGAATGGCCACGGAAGTGGCACCACTAACGGCACTAATGGCTCCTCCA ATGGATCATCGAATGGCACCGATAGCGATCACACCGACACCGATGACGAG GAGAATGAGCTGTTCCAGCTGCTGTCCATCAATGAGATCTTCAATGGAAA GCCCAACGTTTTTCCGGGTCTGGTGCCATTGATCCGCAGCTATTTGCAGT CCATGGAGGTGGACACCGATACGCATTGCACCATTGAACAGTATCTTCGC TTTATCCAGAAGCGTGCCGCCGGCGAGCTAATCACCACGGCCACCTGGAT GCGCGAACAGGTGCTTAGCCACCCGGATTACAAGCAGGATTCCGTGGTGA GCGAGCGCATCAACTACGATTTGCTGAAGCGCATCCAAGGCATCCAGGAG GGCAAGCAGGTGGAGCCAGCGCTGCTCGGACAAGACTATCATTCCAAGAC GAAGACGAAAGACTTCATTCCGCCGGCCTTGCAGAAGCAGTTAGCCAAGA ACGGCTGCTGCGAGGAGAAATGATCGAGGAGCGCGCTGCGGACGCGTTCA GCGCAGCTGGCCGCCGGTGGCCGGCGCATGTGATTCGGGTTTTGTGGGTC CGTTCGGATGGAGTGCGGCATATATGTTGAGGGCAAAGGCAAAGGCGAAG GCGAAGGCAACGGCAAAACGAAACGGAATGGATACGTTACGGATACGGAG CAACATTTATCAATATTATTTTTAATAGCATAATTTCAAACGGATTAACA ATTAGCGTGCACCAAGATCCTAATTGTGGACAAATGTTTTGCGGCCGTGC GTGACCTTTTGGAAATGAAAGTCAAGCAGACCAGGAAGGAGGAGGCGACG GAGAAGGAGAGGATGGATTAAGGAATGGTTATGGGGCACATGAGGATCCA CGTGCCGTAGGATCCTCCGCCAGCCACGATATCCTCCAGGAAGTCACCAT GCTCTCGTCATCGTTTCGATGGAACTTCGAGTTCCTCGAACCGTCGATCG CAGCCGATTTGCCATAGTTATATAGAGAGCTAAATGCTAAACCAACTATA TACCAGCGTCAAGAACTACAACGGCAACATAAATCTCAACTAAGTGCCGT TCCACGAGACCTACAAAAATATGAATACATATAGTTCAAAACGAGGCAAG GTTAAAAGTGTATTTCTGTTTGTTTTCGTTTATATCATATATATTTATTA TACTATTCCTATTCTTATAAATGCAAGTACAATGAAAAGTTGTTTATTTT TTTTAATAGATATATTTACACACACACACACACATACACACGCAAATACA CATTTGTTTAAAAGTGGCCTGCTGTTATTAAACTAGATATGATAAGTACA CATATAACGAAAAAAACAACACTGTGCTATTATAATTTATTGTGTATGTG ATTGTTTCCCCATTATGATACGATTATGATTTATTGTGACCACAAGCAAG CAAATAAACGGAAAATATTGTTGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gclc-RA | 3550 | Gclc-RA | 8..3432 | 1..3425 | 17110 | 99.9 | Plus |
Gclc.c | 3348 | Gclc.c | 108..3230 | 303..3425 | 15555 | 99.8 | Plus |
Gclc.b | 3238 | Gclc.b | 130..3238 | 317..3425 | 15530 | 99.9 | Plus |
Gclc.b | 3238 | Gclc.b | 1..130 | 24..153 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 7995896..7997060 | 2101..943 | 5580 | 98.8 | Minus |
chrX | 22417052 | chrX | 7994445..7995580 | 3423..2284 | 5295 | 98.1 | Minus |
chrX | 22417052 | chrX | 7997133..7997763 | 944..314 | 3140 | 99.8 | Minus |
chrX | 22417052 | chrX | 7995646..7995830 | 2284..2100 | 925 | 100 | Minus |
chrX | 22417052 | chrX | 8007296..8007460 | 317..153 | 825 | 100 | Minus |
chrX | 22417052 | chrX | 8007871..8008023 | 153..1 | 765 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 8104037..8105195 | 2101..943 | 5780 | 99.9 | Minus |
X | 23542271 | X | 8102580..8103721 | 3425..2284 | 5710 | 100 | Minus |
X | 23542271 | X | 8105268..8105898 | 944..314 | 3155 | 100 | Minus |
X | 23542271 | X | 8103787..8103971 | 2284..2100 | 925 | 100 | Minus |
X | 23542271 | X | 8115417..8115581 | 317..153 | 825 | 100 | Minus |
X | 23542271 | X | 8115992..8116144 | 153..1 | 765 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 8112135..8113293 | 2101..943 | 5780 | 99.9 | Minus |
X | 23527363 | X | 8110678..8111819 | 3425..2284 | 5710 | 100 | Minus |
X | 23527363 | X | 8113366..8113996 | 944..314 | 3155 | 100 | Minus |
X | 23527363 | X | 8111885..8112069 | 2284..2100 | 925 | 100 | Minus |
X | 23527363 | X | 8123515..8123679 | 317..153 | 825 | 100 | Minus |
X | 23527363 | X | 8124090..8124242 | 153..1 | 765 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 7994445..7995580 | 2284..3423 | 98 | <- | Minus |
chrX | 7995647..7995828 | 2102..2283 | 100 | <- | Minus |
chrX | 7995896..7997058 | 945..2101 | 98 | <- | Minus |
chrX | 7997133..7997759 | 318..944 | 99 | <- | Minus |
chrX | 8007296..8007459 | 154..317 | 100 | <- | Minus |
chrX | 8007871..8008023 | 1..153 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RB | 1..2154 | 320..2473 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RB | 1..2154 | 320..2473 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RB | 1..2154 | 320..2473 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RB | 1..2154 | 320..2473 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RB | 1..2154 | 320..2473 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RA | 1..3423 | 1..3423 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RA | 1..3423 | 1..3423 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RA | 4..3426 | 1..3423 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RA | 1..3423 | 1..3423 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gclc-RA | 4..3426 | 1..3423 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8103788..8103969 | 2102..2283 | 100 | <- | Minus |
X | 8115992..8116144 | 1..153 | 100 | Minus | |
X | 8102582..8103721 | 2284..3423 | 100 | <- | Minus |
X | 8104037..8105193 | 945..2101 | 99 | <- | Minus |
X | 8105268..8105894 | 318..944 | 100 | <- | Minus |
X | 8115417..8115580 | 154..317 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8103788..8103969 | 2102..2283 | 100 | <- | Minus |
X | 8115992..8116144 | 1..153 | 100 | Minus | |
X | 8102582..8103721 | 2284..3423 | 100 | <- | Minus |
X | 8104037..8105193 | 945..2101 | 99 | <- | Minus |
X | 8105268..8105894 | 318..944 | 100 | <- | Minus |
X | 8115417..8115580 | 154..317 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8103788..8103969 | 2102..2283 | 100 | <- | Minus |
X | 8115992..8116144 | 1..153 | 100 | Minus | |
X | 8102582..8103721 | 2284..3423 | 100 | <- | Minus |
X | 8104037..8105193 | 945..2101 | 99 | <- | Minus |
X | 8105268..8105894 | 318..944 | 100 | <- | Minus |
X | 8115417..8115580 | 154..317 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 7997821..7998002 | 2102..2283 | 100 | <- | Minus |
arm_X | 7996615..7997754 | 2284..3423 | 100 | <- | Minus |
arm_X | 7998070..7999226 | 945..2101 | 99 | <- | Minus |
arm_X | 7999301..7999927 | 318..944 | 100 | <- | Minus |
arm_X | 8009450..8009613 | 154..317 | 100 | <- | Minus |
arm_X | 8010025..8010177 | 1..153 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8110680..8111819 | 2284..3423 | 100 | <- | Minus |
X | 8111886..8112067 | 2102..2283 | 100 | <- | Minus |
X | 8112135..8113291 | 945..2101 | 99 | <- | Minus |
X | 8113366..8113992 | 318..944 | 100 | <- | Minus |
X | 8123515..8123678 | 154..317 | 100 | <- | Minus |
X | 8124090..8124242 | 1..153 | 100 | Minus |
Translation from 319 to 2472
> RE64116.pep MGLLSEGSPLSWEETKALADHVREHGVNQFINLYHRLKDRQGDILKWGDE VEYIIVKFDDEQKVARVALRAQDLLAQLNEKELADPNGVKSLWRPEYGAY MIEGTPGKPFGGLMAHFNLVEANMRYRREEVTELLAKDECVMSITNFPRL GAPNFTYPLAQPRPEDPLSSARSLYFPDEAIFPGHPRFKTLTRNIRKRRG EKVSIKLKVFKDTKTKLPVEGAPPGEPDVVLLDAMGFGMGCCCLQLTFQA CNITEARRLYDQLAPLCPIMLALTAASPIYRGYLTESDCRWNVISSSVDC RTEEERGLAPLDQQKFRIAKSRYDSIDSYLSPEGAKYNDVPLTYDEKVYQ RLVEGGIDHLLAQHVAHLFIRDTVSLFSEKVHQNDNEDTDHFENIQSTNW QTMRFKPPPPNSSIGWRVEFRPCEAQISDFENAAIVCFVVLLTRVILSYQ LNFLTPISKVDENMQTAQKRDACRKEKFWFRKSSKTTEQRAAKAQAQAQA QAKAQAQTNGKATLNGNGLANGNGNGSENSDQEEQQPLTNGSAKMNGHGS GTTNGTNGSSNGSSNGTDSDHTDTDDEENELFQLLSINEIFNGKPNVFPG LVPLIRSYLQSMEVDTDTHCTIEQYLRFIQKRAAGELITTATWMREQVLS HPDYKQDSVVSERINYDLLKRIQGIQEGKQVEPALLGQDYHSKTKTKDFI PPALQKQLAKNGCCEEK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19496-PA | 729 | GF19496-PA | 1..729 | 1..717 | 3482 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17988-PA | 708 | GG17988-PA | 1..708 | 1..717 | 3716 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12768-PA | 702 | GH12768-PA | 1..702 | 1..717 | 3248 | 85.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gclc-PD | 717 | CG2259-PD | 1..717 | 1..717 | 3778 | 100 | Plus |
Gclc-PC | 717 | CG2259-PC | 1..717 | 1..717 | 3778 | 100 | Plus |
Gclc-PB | 717 | CG2259-PB | 1..717 | 1..717 | 3778 | 100 | Plus |
Gclc-PA | 717 | CG2259-PA | 1..717 | 1..717 | 3778 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15213-PA | 698 | GI15213-PA | 1..698 | 1..717 | 3214 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20203-PA | 246 | GL20203-PA | 1..216 | 1..216 | 1105 | 94.4 | Plus |
Dper\GL26802-PA | 87 | GL26802-PA | 5..86 | 209..291 | 415 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15329-PA | 729 | GA15329-PA | 1..726 | 1..716 | 3501 | 89.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11211-PA | 716 | GM11211-PA | 1..716 | 1..717 | 3832 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16129-PA | 722 | GD16129-PA | 1..722 | 1..717 | 3830 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16623-PA | 395 | GJ16623-PA | 1..385 | 124..513 | 1934 | 91 | Plus |
Dvir\GJ16625-PA | 156 | GJ16625-PA | 11..156 | 570..717 | 709 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25641-PA | 711 | GK25641-PA | 1..711 | 1..717 | 3415 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17482-PA | 716 | GE17482-PA | 1..716 | 1..717 | 3749 | 96.7 | Plus |
Translation from 319 to 2472
> RE64116.hyp MGLLSEGSPLSWEETKALADHVREHGVNQFINLYHRLKDRQGDILKWGDE VEYIIVKFDDEQKVARVALRAQDLLAQLNEKELADPNGVKSLWRPEYGAY MIEGTPGKPFGGLMAHFNLVEANMRYRREEVTELLAKDECVMSITNFPRL GAPNFTYPLAQPRPEDPLSSARSLYFPDEAIFPGHPRFKTLTRNIRKRRG EKVSIKLKVFKDTKTKLPVEGAPPGEPDVVLLDAMGFGMGCCCLQLTFQA CNITEARRLYDQLAPLCPIMLALTAASPIYRGYLTESDCRWNVISSSVDC RTEEERGLAPLDQQKFRIAKSRYDSIDSYLSPEGAKYNDVPLTYDEKVYQ RLVEGGIDHLLAQHVAHLFIRDTVSLFSEKVHQNDNEDTDHFENIQSTNW QTMRFKPPPPNSSIGWRVEFRPCEAQISDFENAAIVCFVVLLTRVILSYQ LNFLTPISKVDENMQTAQKRDACRKEKFWFRKSSKTTEQRAAKAQAQAQA QAKAQAQTNGKATLNGNGLANGNGNGSENSDQEEQQPLTNGSAKMNGHGS GTTNGTNGSSNGSSNGTDSDHTDTDDEENELFQLLSINEIFNGKPNVFPG LVPLIRSYLQSMEVDTDTHCTIEQYLRFIQKRAAGELITTATWMREQVLS HPDYKQDSVVSERINYDLLKRIQGIQEGKQVEPALLGQDYHSKTKTKDFI PPALQKQLAKNGCCEEK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gclc-PD | 717 | CG2259-PD | 1..717 | 1..717 | 3778 | 100 | Plus |
Gclc-PC | 717 | CG2259-PC | 1..717 | 1..717 | 3778 | 100 | Plus |
Gclc-PB | 717 | CG2259-PB | 1..717 | 1..717 | 3778 | 100 | Plus |
Gclc-PA | 717 | CG2259-PA | 1..717 | 1..717 | 3778 | 100 | Plus |