Clone RE64116 Report

Search the DGRC for RE64116

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:641
Well:16
Vector:pFlc-1
Associated Gene/TranscriptGclc-RA
Protein status:RE64116.pep: gold
Preliminary Size:2154
Sequenced Size:3438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2259 2001-12-14 Blastp of sequenced clone
CG2259 2002-01-01 Sim4 clustering to Release 2
CG2259 2003-01-01 Sim4 clustering to Release 3
Gclc 2008-04-29 Release 5.5 accounting
Gclc 2008-08-15 Release 5.9 accounting
Gclc 2008-12-18 5.12 accounting

Clone Sequence Records

RE64116.complete Sequence

3438 bp (3438 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071586

> RE64116.complete
ATTCAAAATTTGTATTTAAAGTGGAGCGTTTTATTGTTTTGGGCATTCGT
TAGTGTTAATAACACTGTTTACGTCGACGGAGAATTTGGCGGCAAAGGAA
ACGCAATACCAAAGTCGCGTTTAAAGAAATTACAAATATACAAAATAAAT
ACGAAACACACACACACCAACACACATCGCAACACCAAAAACATAATAAG
GAAATAGTGAGAGCGCAAAAACAGCGGTAAATTCGGCAAATAACGTTACA
CAACCCACCAAAACTGCAGCGAGAGAGCGGCAGAGAGCGAAACAGAGTGA
CGAAGAACAAAAAGCAGCAATGGGTCTACTGAGCGAGGGCAGTCCACTCT
CCTGGGAGGAGACCAAGGCGCTGGCTGATCATGTGCGTGAGCATGGCGTC
AATCAGTTCATCAACTTGTACCACAGACTCAAGGATCGCCAGGGTGACAT
ATTGAAATGGGGCGACGAGGTGGAGTACATTATTGTCAAGTTCGACGATG
AACAGAAGGTGGCACGTGTGGCGCTGCGCGCCCAGGATCTGCTGGCACAG
CTCAATGAGAAGGAACTGGCCGATCCCAATGGTGTCAAGTCGCTGTGGCG
TCCGGAATACGGAGCCTACATGATTGAGGGCACACCGGGCAAACCCTTTG
GCGGTCTGATGGCACACTTCAATCTGGTTGAGGCCAATATGCGCTATCGT
CGCGAAGAGGTCACCGAGCTGCTGGCCAAGGACGAGTGCGTTATGTCCAT
TACGAATTTCCCACGACTCGGCGCACCAAATTTCACTTATCCGCTTGCCC
AGCCGCGTCCCGAGGATCCTCTCAGTTCAGCCCGCTCGCTCTACTTCCCG
GATGAGGCCATCTTTCCGGGTCACCCGCGTTTCAAGACACTCACGCGTAA
CATTCGCAAGCGACGCGGCGAGAAGGTGTCCATCAAGCTAAAAGTTTTCA
AGGACACAAAGACGAAGCTACCGGTGGAGGGTGCTCCGCCTGGCGAACCG
GATGTGGTGCTCCTGGACGCCATGGGCTTCGGCATGGGCTGCTGTTGCTT
GCAGCTCACCTTCCAGGCCTGTAACATTACGGAGGCGCGTCGCCTCTACG
ATCAGCTGGCTCCCCTCTGTCCGATCATGTTGGCTCTGACGGCCGCTTCG
CCCATTTACAGGGGCTATCTAACCGAATCAGATTGTCGATGGAATGTGAT
TAGCTCCTCGGTGGATTGCCGCACGGAAGAGGAACGCGGACTGGCGCCGC
TGGATCAGCAAAAGTTCAGGATAGCCAAGTCGCGATACGATTCGATTGAC
TCGTATTTGTCGCCCGAGGGAGCCAAATATAACGATGTACCGCTCACATA
CGATGAGAAGGTCTATCAGCGTCTGGTGGAGGGCGGTATCGATCATCTGT
TGGCCCAGCATGTTGCCCATTTGTTTATACGCGACACCGTGTCGCTGTTC
AGCGAGAAGGTGCATCAAAACGACAACGAGGATACGGATCATTTCGAGAA
CATTCAGTCCACCAATTGGCAGACCATGCGCTTCAAGCCGCCGCCACCGA
ACAGCTCCATTGGCTGGCGTGTCGAGTTTCGACCTTGCGAGGCGCAGATC
AGTGATTTCGAGAATGCGGCCATCGTGTGCTTTGTGGTGCTGCTCACCCG
TGTGATTCTCTCCTACCAGCTGAACTTCCTAACGCCGATCAGCAAGGTGG
ACGAGAACATGCAGACGGCCCAGAAGCGAGATGCTTGTCGCAAGGAGAAG
TTTTGGTTCCGCAAATCCTCGAAGACCACCGAGCAGAGGGCGGCCAAGGC
GCAGGCACAAGCTCAAGCGCAAGCTAAAGCCCAGGCCCAGACGAATGGCA
AGGCCACTTTGAATGGCAATGGACTGGCGAATGGAAATGGGAATGGCAGC
GAGAACAGTGACCAGGAAGAGCAGCAGCCTCTGACCAACGGTTCGGCCAA
GATGAATGGCCACGGAAGTGGCACCACTAACGGCACTAATGGCTCCTCCA
ATGGATCATCGAATGGCACCGATAGCGATCACACCGACACCGATGACGAG
GAGAATGAGCTGTTCCAGCTGCTGTCCATCAATGAGATCTTCAATGGAAA
GCCCAACGTTTTTCCGGGTCTGGTGCCATTGATCCGCAGCTATTTGCAGT
CCATGGAGGTGGACACCGATACGCATTGCACCATTGAACAGTATCTTCGC
TTTATCCAGAAGCGTGCCGCCGGCGAGCTAATCACCACGGCCACCTGGAT
GCGCGAACAGGTGCTTAGCCACCCGGATTACAAGCAGGATTCCGTGGTGA
GCGAGCGCATCAACTACGATTTGCTGAAGCGCATCCAAGGCATCCAGGAG
GGCAAGCAGGTGGAGCCAGCGCTGCTCGGACAAGACTATCATTCCAAGAC
GAAGACGAAAGACTTCATTCCGCCGGCCTTGCAGAAGCAGTTAGCCAAGA
ACGGCTGCTGCGAGGAGAAATGATCGAGGAGCGCGCTGCGGACGCGTTCA
GCGCAGCTGGCCGCCGGTGGCCGGCGCATGTGATTCGGGTTTTGTGGGTC
CGTTCGGATGGAGTGCGGCATATATGTTGAGGGCAAAGGCAAAGGCGAAG
GCGAAGGCAACGGCAAAACGAAACGGAATGGATACGTTACGGATACGGAG
CAACATTTATCAATATTATTTTTAATAGCATAATTTCAAACGGATTAACA
ATTAGCGTGCACCAAGATCCTAATTGTGGACAAATGTTTTGCGGCCGTGC
GTGACCTTTTGGAAATGAAAGTCAAGCAGACCAGGAAGGAGGAGGCGACG
GAGAAGGAGAGGATGGATTAAGGAATGGTTATGGGGCACATGAGGATCCA
CGTGCCGTAGGATCCTCCGCCAGCCACGATATCCTCCAGGAAGTCACCAT
GCTCTCGTCATCGTTTCGATGGAACTTCGAGTTCCTCGAACCGTCGATCG
CAGCCGATTTGCCATAGTTATATAGAGAGCTAAATGCTAAACCAACTATA
TACCAGCGTCAAGAACTACAACGGCAACATAAATCTCAACTAAGTGCCGT
TCCACGAGACCTACAAAAATATGAATACATATAGTTCAAAACGAGGCAAG
GTTAAAAGTGTATTTCTGTTTGTTTTCGTTTATATCATATATATTTATTA
TACTATTCCTATTCTTATAAATGCAAGTACAATGAAAAGTTGTTTATTTT
TTTTAATAGATATATTTACACACACACACACACATACACACGCAAATACA
CATTTGTTTAAAAGTGGCCTGCTGTTATTAAACTAGATATGATAAGTACA
CATATAACGAAAAAAACAACACTGTGCTATTATAATTTATTGTGTATGTG
ATTGTTTCCCCATTATGATACGATTATGATTTATTGTGACCACAAGCAAG
CAAATAAACGGAAAATATTGTTGAAAAAAAAAAAAAAA

RE64116.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Gclc-RA 3550 Gclc-RA 8..3432 1..3425 17110 99.9 Plus
Gclc.c 3348 Gclc.c 108..3230 303..3425 15555 99.8 Plus
Gclc.b 3238 Gclc.b 130..3238 317..3425 15530 99.9 Plus
Gclc.b 3238 Gclc.b 1..130 24..153 650 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7995896..7997060 2101..943 5580 98.8 Minus
chrX 22417052 chrX 7994445..7995580 3423..2284 5295 98.1 Minus
chrX 22417052 chrX 7997133..7997763 944..314 3140 99.8 Minus
chrX 22417052 chrX 7995646..7995830 2284..2100 925 100 Minus
chrX 22417052 chrX 8007296..8007460 317..153 825 100 Minus
chrX 22417052 chrX 8007871..8008023 153..1 765 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:09:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8104037..8105195 2101..943 5780 99.9 Minus
X 23542271 X 8102580..8103721 3425..2284 5710 100 Minus
X 23542271 X 8105268..8105898 944..314 3155 100 Minus
X 23542271 X 8103787..8103971 2284..2100 925 100 Minus
X 23542271 X 8115417..8115581 317..153 825 100 Minus
X 23542271 X 8115992..8116144 153..1 765 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8112135..8113293 2101..943 5780 99.9 Minus
X 23527363 X 8110678..8111819 3425..2284 5710 100 Minus
X 23527363 X 8113366..8113996 944..314 3155 100 Minus
X 23527363 X 8111885..8112069 2284..2100 925 100 Minus
X 23527363 X 8123515..8123679 317..153 825 100 Minus
X 23527363 X 8124090..8124242 153..1 765 100 Minus
Blast to na_te.dros performed 2019-03-15 20:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 776..902 125..252 132 60 Plus
TAHRE 10463 TAHRE OSV 10463bp 7319..7428 72..183 131 63.5 Plus

RE64116.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:28:44 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7994445..7995580 2284..3423 98 <- Minus
chrX 7995647..7995828 2102..2283 100 <- Minus
chrX 7995896..7997058 945..2101 98 <- Minus
chrX 7997133..7997759 318..944 99 <- Minus
chrX 8007296..8007459 154..317 100 <- Minus
chrX 8007871..8008023 1..153 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:17:11 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RB 1..2154 320..2473 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:05:17 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RB 1..2154 320..2473 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:13:12 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RB 1..2154 320..2473 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:56 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RB 1..2154 320..2473 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:50 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RB 1..2154 320..2473 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:17:10 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RA 1..3423 1..3423 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:05:17 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RA 1..3423 1..3423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:12 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RA 4..3426 1..3423 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:57 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RA 1..3423 1..3423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:50 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
Gclc-RA 4..3426 1..3423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:28:44 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
X 8103788..8103969 2102..2283 100 <- Minus
X 8115992..8116144 1..153 100   Minus
X 8102582..8103721 2284..3423 100 <- Minus
X 8104037..8105193 945..2101 99 <- Minus
X 8105268..8105894 318..944 100 <- Minus
X 8115417..8115580 154..317 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:28:44 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
X 8103788..8103969 2102..2283 100 <- Minus
X 8115992..8116144 1..153 100   Minus
X 8102582..8103721 2284..3423 100 <- Minus
X 8104037..8105193 945..2101 99 <- Minus
X 8105268..8105894 318..944 100 <- Minus
X 8115417..8115580 154..317 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:28:44 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
X 8103788..8103969 2102..2283 100 <- Minus
X 8115992..8116144 1..153 100   Minus
X 8102582..8103721 2284..3423 100 <- Minus
X 8104037..8105193 945..2101 99 <- Minus
X 8105268..8105894 318..944 100 <- Minus
X 8115417..8115580 154..317 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:12 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7997821..7998002 2102..2283 100 <- Minus
arm_X 7996615..7997754 2284..3423 100 <- Minus
arm_X 7998070..7999226 945..2101 99 <- Minus
arm_X 7999301..7999927 318..944 100 <- Minus
arm_X 8009450..8009613 154..317 100 <- Minus
arm_X 8010025..8010177 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:04 Download gff for RE64116.complete
Subject Subject Range Query Range Percent Splice Strand
X 8110680..8111819 2284..3423 100 <- Minus
X 8111886..8112067 2102..2283 100 <- Minus
X 8112135..8113291 945..2101 99 <- Minus
X 8113366..8113992 318..944 100 <- Minus
X 8123515..8123678 154..317 100 <- Minus
X 8124090..8124242 1..153 100   Minus

RE64116.pep Sequence

Translation from 319 to 2472

> RE64116.pep
MGLLSEGSPLSWEETKALADHVREHGVNQFINLYHRLKDRQGDILKWGDE
VEYIIVKFDDEQKVARVALRAQDLLAQLNEKELADPNGVKSLWRPEYGAY
MIEGTPGKPFGGLMAHFNLVEANMRYRREEVTELLAKDECVMSITNFPRL
GAPNFTYPLAQPRPEDPLSSARSLYFPDEAIFPGHPRFKTLTRNIRKRRG
EKVSIKLKVFKDTKTKLPVEGAPPGEPDVVLLDAMGFGMGCCCLQLTFQA
CNITEARRLYDQLAPLCPIMLALTAASPIYRGYLTESDCRWNVISSSVDC
RTEEERGLAPLDQQKFRIAKSRYDSIDSYLSPEGAKYNDVPLTYDEKVYQ
RLVEGGIDHLLAQHVAHLFIRDTVSLFSEKVHQNDNEDTDHFENIQSTNW
QTMRFKPPPPNSSIGWRVEFRPCEAQISDFENAAIVCFVVLLTRVILSYQ
LNFLTPISKVDENMQTAQKRDACRKEKFWFRKSSKTTEQRAAKAQAQAQA
QAKAQAQTNGKATLNGNGLANGNGNGSENSDQEEQQPLTNGSAKMNGHGS
GTTNGTNGSSNGSSNGTDSDHTDTDDEENELFQLLSINEIFNGKPNVFPG
LVPLIRSYLQSMEVDTDTHCTIEQYLRFIQKRAAGELITTATWMREQVLS
HPDYKQDSVVSERINYDLLKRIQGIQEGKQVEPALLGQDYHSKTKTKDFI
PPALQKQLAKNGCCEEK*

RE64116.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19496-PA 729 GF19496-PA 1..729 1..717 3482 91.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17988-PA 708 GG17988-PA 1..708 1..717 3716 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12768-PA 702 GH12768-PA 1..702 1..717 3248 85.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Gclc-PD 717 CG2259-PD 1..717 1..717 3778 100 Plus
Gclc-PC 717 CG2259-PC 1..717 1..717 3778 100 Plus
Gclc-PB 717 CG2259-PB 1..717 1..717 3778 100 Plus
Gclc-PA 717 CG2259-PA 1..717 1..717 3778 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15213-PA 698 GI15213-PA 1..698 1..717 3214 85.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20203-PA 246 GL20203-PA 1..216 1..216 1105 94.4 Plus
Dper\GL26802-PA 87 GL26802-PA 5..86 209..291 415 90.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15329-PA 729 GA15329-PA 1..726 1..716 3501 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11211-PA 716 GM11211-PA 1..716 1..717 3832 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16129-PA 722 GD16129-PA 1..722 1..717 3830 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16623-PA 395 GJ16623-PA 1..385 124..513 1934 91 Plus
Dvir\GJ16625-PA 156 GJ16625-PA 11..156 570..717 709 91.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25641-PA 711 GK25641-PA 1..711 1..717 3415 88.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17482-PA 716 GE17482-PA 1..716 1..717 3749 96.7 Plus

RE64116.hyp Sequence

Translation from 319 to 2472

> RE64116.hyp
MGLLSEGSPLSWEETKALADHVREHGVNQFINLYHRLKDRQGDILKWGDE
VEYIIVKFDDEQKVARVALRAQDLLAQLNEKELADPNGVKSLWRPEYGAY
MIEGTPGKPFGGLMAHFNLVEANMRYRREEVTELLAKDECVMSITNFPRL
GAPNFTYPLAQPRPEDPLSSARSLYFPDEAIFPGHPRFKTLTRNIRKRRG
EKVSIKLKVFKDTKTKLPVEGAPPGEPDVVLLDAMGFGMGCCCLQLTFQA
CNITEARRLYDQLAPLCPIMLALTAASPIYRGYLTESDCRWNVISSSVDC
RTEEERGLAPLDQQKFRIAKSRYDSIDSYLSPEGAKYNDVPLTYDEKVYQ
RLVEGGIDHLLAQHVAHLFIRDTVSLFSEKVHQNDNEDTDHFENIQSTNW
QTMRFKPPPPNSSIGWRVEFRPCEAQISDFENAAIVCFVVLLTRVILSYQ
LNFLTPISKVDENMQTAQKRDACRKEKFWFRKSSKTTEQRAAKAQAQAQA
QAKAQAQTNGKATLNGNGLANGNGNGSENSDQEEQQPLTNGSAKMNGHGS
GTTNGTNGSSNGSSNGTDSDHTDTDDEENELFQLLSINEIFNGKPNVFPG
LVPLIRSYLQSMEVDTDTHCTIEQYLRFIQKRAAGELITTATWMREQVLS
HPDYKQDSVVSERINYDLLKRIQGIQEGKQVEPALLGQDYHSKTKTKDFI
PPALQKQLAKNGCCEEK*

RE64116.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Gclc-PD 717 CG2259-PD 1..717 1..717 3778 100 Plus
Gclc-PC 717 CG2259-PC 1..717 1..717 3778 100 Plus
Gclc-PB 717 CG2259-PB 1..717 1..717 3778 100 Plus
Gclc-PA 717 CG2259-PA 1..717 1..717 3778 100 Plus