BDGP Sequence Production Resources |
Search the DGRC for RE64386
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 643 |
Well: | 86 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5235-RA |
Protein status: | RE64386.pep: gold |
Preliminary Size: | 1172 |
Sequenced Size: | 2726 |
Gene | Date | Evidence |
---|---|---|
CG5235 | 2001-12-14 | Blastp of sequenced clone |
CG5235 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5235 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5235 | 2008-04-29 | Release 5.5 accounting |
CG5235 | 2008-08-15 | Release 5.9 accounting |
CG5235 | 2008-12-18 | 5.12 accounting |
2726 bp (2726 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071594
> RE64386.complete CCCGACGCGATCACTTTGTTCAATGAAAAAAATGCAGACGCGCGAATTAC TTGCAAACTCAACACCAAACAAGTTTCAATTTCGCCTAAAAGAGAATCAT ATTGTTCACATACGCTAAAGTACAAGGCTAACGCCATGTCCGTTCAAGAC GTACTATGGATCGTACTCACGGTGCAGTTGAGTTTTGGTCTTGCGTATTT TGAAAACAATCAAAGGACGCAGGACTATGATGTCGATAAAAATGGTTCTG TACACCACAAAAACTGGGTGCGTAACGAAATGATGGACAGCTTGGGCTTG TACTGGCTCAAATGGTGGATAAACGCCAACGAAAATAGCATTTACTTTGA AGTAACTGTTCACACACGAGGCTTTGCCGGCCTGGGTTTCTCCAAGGATG GCCGGCTGGCCAGAGCGGATATGGTTTTGATGTGGGTGGATGACGCCACA GGACATCCGAACGTCTTGGACTGCCATGGGGCGCTGCATCCTTCAAGCGG ACCGCCGCTGCAGGACGATACTCAAAACTACGATGTCCTAGATGGCAAAC AAAATGGGACGCACACAATCCTGAAGTTTAAACGCAAAATTGAGACCTGT GACCCATTCGATATTCCACTCTCCGCTGATACGTTTAAGGTACTGTGGTC CATTGGGGAAAATGATCCTATTCATGGAAACTTGGATTGGCAAGGTCAGA GCAGAGGCGTGAAAGCTTTGCAATTGTTTTCGCCAATGTTTACGAAAAAT AGTCACTCGATCGAAGGCATCCAAAAATGGGACATAACTGTGAACAACGT AACAATTGATCGGTCAATGGATACACTATACTGGTGTAAAATAGTGCGAC TACCAGAGTTAACTGGCAAACAGCATATAATTGGTTATGAGCCGCTGCTG TCTGGTAAATACGAGAGGAATGTTGTTCACCACATGACCCTGTTTGAGTG TCAGTCCAAGATATACTCTGGATCCGATCCTTCGTCCTGGGACCTTTGGG TTAGGAGTGCCGGCACAGTGTGCAACAGCAACCTACTGACGCCACGCGAC TGGGATTCGTGCTCTACGCCAGTTGCAGTTTGGTCCTTGGGATCTGATGG ACAGTTTCTACCTCCCCACGCAGGGATCCCAATGGGCGGAGCATCTGGAG TTAGCTATTATATGCTGGAAATACACTACGATAATCCCGATGGAAAGGAA TCGGTGGATCACTCCGGTTTTCGAATACACTACACACCCAATCTGCGAAC CTACGATTCCGGAATTCTAATAAGTGGTGTTTCCATTTCGGAAACGCAAC TCATTCCGCCTGGTCAAAAGAAGTATCGATCCGTCGGCATTTGTGGGCCG TCTTGTTCAAGCGTCATGTTCCCAAAGGATGGTATTAAAATAATATCCGG AACGTTGCACTCACATCAAGCTGGTCGCACAATTAGTCTTCGACATGTTC GATCTGGTAAGGAGTTGAATCCGATCATTGTTGACGAAAACTACGATTAC AGGCACCAAAAAGTCCATCAGCTTGCCAATGAAACGGTCGTATTGCCAGG GGATTACCTAATTACAGACTGTTCCTATGAGACAAAGTACAGAAAACGAC CCACATTCGGGGGCTATTCCACGAAGGAGGAAATGTGTCTCACCTTTATT ACTTATTACCCAAAGATTGAGATGTCCGGATGTTATAGTATGACACCAGT GCGTGAGTTTTTCGAGATGTTCCGTGTGTACCAATTCTATTCCTTAAATA TGACCGATGTCGAGAACATGTTTCTCTACAACAGTGACTACACCGACTAC AGTAAACAGGCGAAGAATGCGACAAACAAACCAAATTCCGGAAAAACGTC CAAAGAAGACGTCATCTACCAGGAGTCTTTGTTAAACAAGCTTGTTATAT CCGACCCAGCCGAATTTCACGATCGCACATTTCTATCGCATTTAAATCAG TTGCCTTGGCATGATCCTCTCTTTACGAAACGTGTTGAACAAGCATTTAT AACCGGAACACATATGACGTTTTGTCGCGTATCCAAGGATTCATTATCAA TTCCTTCGGAAATAATTCGCTATCCCGAGTTTACAGCGTACGTGAAGCCA CCGGCAGCTTGTTTGAATTATTTGTTCACTGATAATGAAGAACTTCGTTC GGGAAGTTCACAATTTTTTACAGACTTTACGTTAAGTCTTTTATTACTCA TTCAGCTCGGGTTGCAAACGACATTATTGTAAAATAAAAGTGCGTTTGAA AGTATTATTTAAGCCATCCAAAACGTTTTCAGTGAAAATGCTAGCTTACC AAATGAACGATTATCAAATATTCAAAATTATTCTCGTAATATGAAACATG AAAATATATCAAATCGATATAAACTAGGTACTAACATAAAGTAATATACA TTTTATAGAGATTTAAGGTGCTTTTAAGAACTTTTTAATTTAATTTTAAT TTAAGAACTTTTAAATTGGATTTAAAAATTTTGCACTAAATGTAGAAAGT AAAAAATACACCTCCGACTTGCAAACCAATCAAATAATTTTCTCTTAAAT AAGTTAAATTACCGACAATAAAATAAGGATTAACTTATATTTATGTTAAG GTTTTCATATTTTTGAAGATTTACAGAATGTATGCATCTTTTCAGGGATA CTAATATTAGCCTATATTAAAAATGTATGCAGTTTTCAAATAAAGTTAAT TTTTATAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5235-RA | 2731 | CG5235-RA | 26..2731 | 1..2706 | 13530 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 676..817 | 2362..2508 | 138 | 59.1 | Plus |
Penelope | 804 | Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). | 231..372 | 2362..2508 | 138 | 59.1 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 13..175 | 2628..2464 | 119 | 56.2 | Minus |
gtwin | 7411 | gtwin GTWIN 7411bp | 4308..4402 | 76..174 | 115 | 64.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16077413..16079472 | 625..2684 | 98 | <- | Minus |
chr3L | 16079528..16080151 | 1..624 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2097 | 136..2232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2097 | 136..2232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2097 | 136..2232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2097 | 136..2232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2097 | 136..2232 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2704 | 1..2704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2706 | 1..2706 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 6..2711 | 1..2706 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 1..2704 | 1..2704 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5235-RA | 6..2711 | 1..2706 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16087623..16089708 | 625..2710 | 99 | <- | Minus |
3L | 16089764..16090387 | 1..624 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16087623..16089708 | 625..2710 | 99 | <- | Minus |
3L | 16089764..16090387 | 1..624 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16087623..16089708 | 625..2710 | 99 | <- | Minus |
3L | 16089764..16090387 | 1..624 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16080723..16082808 | 625..2710 | 99 | <- | Minus |
arm_3L | 16082864..16083487 | 1..624 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16080723..16082808 | 625..2710 | 99 | <- | Minus |
3L | 16082864..16083487 | 1..624 | 100 | Minus |
Translation from 0 to 2231
> RE64386.hyp PDAITLFNEKNADARITCKLNTKQVSISPKRESYCSHTLKYKANAMSVQD VLWIVLTVQLSFGLAYFENNQRTQDYDVDKNGSVHHKNWVRNEMMDSLGL YWLKWWINANENSIYFEVTVHTRGFAGLGFSKDGRLARADMVLMWVDDAT GHPNVLDCHGALHPSSGPPLQDDTQNYDVLDGKQNGTHTILKFKRKIETC DPFDIPLSADTFKVLWSIGENDPIHGNLDWQGQSRGVKALQLFSPMFTKN SHSIEGIQKWDITVNNVTIDRSMDTLYWCKIVRLPELTGKQHIIGYEPLL SGKYERNVVHHMTLFECQSKIYSGSDPSSWDLWVRSAGTVCNSNLLTPRD WDSCSTPVAVWSLGSDGQFLPPHAGIPMGGASGVSYYMLEIHYDNPDGKE SVDHSGFRIHYTPNLRTYDSGILISGVSISETQLIPPGQKKYRSVGICGP SCSSVMFPKDGIKIISGTLHSHQAGRTISLRHVRSGKELNPIIVDENYDY RHQKVHQLANETVVLPGDYLITDCSYETKYRKRPTFGGYSTKEEMCLTFI TYYPKIEMSGCYSMTPVREFFEMFRVYQFYSLNMTDVENMFLYNSDYTDY SKQAKNATNKPNSGKTSKEDVIYQESLLNKLVISDPAEFHDRTFLSHLNQ LPWHDPLFTKRVEQAFITGTHMTFCRVSKDSLSIPSEIIRYPEFTAYVKP PAACLNYLFTDNEELRSGSSQFFTDFTLSLLLLIQLGLQTTLL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5235-PB | 698 | CG5235-PB | 1..698 | 46..743 | 3770 | 100 | Plus |
CG5235-PA | 698 | CG5235-PA | 1..698 | 46..743 | 3770 | 100 | Plus |
olf413-PC | 760 | CG12673-PC | 123..584 | 106..564 | 674 | 33.2 | Plus |
olf413-PB | 760 | CG12673-PB | 123..584 | 106..564 | 674 | 33.2 | Plus |
Tbh-PC | 670 | CG1543-PC | 136..567 | 128..577 | 538 | 32.2 | Plus |
Translation from 135 to 2231
> RE64386.pep MSVQDVLWIVLTVQLSFGLAYFENNQRTQDYDVDKNGSVHHKNWVRNEMM DSLGLYWLKWWINANENSIYFEVTVHTRGFAGLGFSKDGRLARADMVLMW VDDATGHPNVLDCHGALHPSSGPPLQDDTQNYDVLDGKQNGTHTILKFKR KIETCDPFDIPLSADTFKVLWSIGENDPIHGNLDWQGQSRGVKALQLFSP MFTKNSHSIEGIQKWDITVNNVTIDRSMDTLYWCKIVRLPELTGKQHIIG YEPLLSGKYERNVVHHMTLFECQSKIYSGSDPSSWDLWVRSAGTVCNSNL LTPRDWDSCSTPVAVWSLGSDGQFLPPHAGIPMGGASGVSYYMLEIHYDN PDGKESVDHSGFRIHYTPNLRTYDSGILISGVSISETQLIPPGQKKYRSV GICGPSCSSVMFPKDGIKIISGTLHSHQAGRTISLRHVRSGKELNPIIVD ENYDYRHQKVHQLANETVVLPGDYLITDCSYETKYRKRPTFGGYSTKEEM CLTFITYYPKIEMSGCYSMTPVREFFEMFRVYQFYSLNMTDVENMFLYNS DYTDYSKQAKNATNKPNSGKTSKEDVIYQESLLNKLVISDPAEFHDRTFL SHLNQLPWHDPLFTKRVEQAFITGTHMTFCRVSKDSLSIPSEIIRYPEFT AYVKPPAACLNYLFTDNEELRSGSSQFFTDFTLSLLLLIQLGLQTTLL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10948-PA | 756 | GF10948-PA | 101..576 | 61..519 | 663 | 32.4 | Plus |
Dana\GF21296-PA | 652 | GF21296-PA | 119..642 | 83..620 | 564 | 28.9 | Plus |
Dana\GF12045-PA | 362 | GF12045-PA | 61..334 | 231..518 | 168 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13499-PA | 693 | GG13499-PA | 1..693 | 1..698 | 3494 | 92.4 | Plus |
Dere\GG16246-PA | 765 | GG16246-PA | 128..589 | 61..519 | 689 | 33.4 | Plus |
Dere\GG19681-PA | 655 | GG19681-PA | 121..539 | 83..518 | 541 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21727-PA | 697 | GH21727-PA | 9..686 | 7..688 | 2458 | 65.4 | Plus |
Dgri\GH14670-PA | 768 | GH14670-PA | 127..587 | 61..519 | 685 | 34.1 | Plus |
Dgri\GH24481-PA | 680 | GH24481-PA | 142..565 | 83..518 | 481 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5235-PB | 698 | CG5235-PB | 1..698 | 1..698 | 3770 | 100 | Plus |
CG5235-PA | 698 | CG5235-PA | 1..698 | 1..698 | 3770 | 100 | Plus |
olf413-PC | 760 | CG12673-PC | 123..584 | 61..519 | 674 | 33.2 | Plus |
olf413-PB | 760 | CG12673-PB | 123..584 | 61..519 | 674 | 33.2 | Plus |
Tbh-PC | 670 | CG1543-PC | 136..567 | 83..532 | 538 | 32.2 | Plus |
Tbh-PB | 670 | CG1543-PB | 136..567 | 83..532 | 538 | 32.2 | Plus |
Phm-PA | 365 | CG3832-PA | 66..339 | 231..518 | 172 | 24.3 | Plus |
Phm-PB | 365 | CG3832-PB | 66..339 | 231..518 | 172 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20678-PA | 678 | GI20678-PA | 1..658 | 6..661 | 2370 | 66.1 | Plus |
Dmoj\GI13780-PA | 769 | GI13780-PA | 127..587 | 61..519 | 679 | 33.7 | Plus |
Dmoj\GI11219-PA | 655 | GI11219-PA | 122..540 | 83..518 | 566 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14102-PA | 657 | GL14102-PA | 1..657 | 49..696 | 2535 | 69.9 | Plus |
Dper\GL25426-PA | 757 | GL25426-PA | 118..594 | 61..534 | 680 | 32.6 | Plus |
Dper\GL15140-PA | 635 | GL15140-PA | 102..520 | 83..518 | 551 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18755-PA | 705 | GA18755-PA | 8..697 | 7..687 | 2610 | 68.9 | Plus |
Dpse\GA11749-PA | 759 | GA11749-PA | 120..596 | 61..534 | 680 | 32.6 | Plus |
Dpse\GA22782-PA | 643 | GA22782-PA | 110..528 | 83..518 | 550 | 31.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24448-PA | 191 | GM24448-PA | 1..164 | 1..162 | 791 | 90.9 | Plus |
Dsec\GM22434-PA | 707 | GM22434-PA | 126..505 | 61..438 | 536 | 32.7 | Plus |
Dsec\GM11221-PA | 566 | GM11221-PA | 46..450 | 83..518 | 422 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12516-PA | 697 | GD12516-PA | 1..697 | 1..698 | 3672 | 97 | Plus |
Dsim\Tbh-PA | 561 | GD16874-PA | 157..445 | 216..518 | 469 | 33.8 | Plus |
Dsim\GD15022-PA | 258 | GD15022-PA | 56..254 | 124..310 | 245 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20428-PA | 697 | GJ20428-PA | 9..690 | 6..688 | 2465 | 66.4 | Plus |
Dvir\GJ13583-PA | 755 | GJ13583-PA | 117..577 | 61..519 | 687 | 33.9 | Plus |
Dvir\GJ16861-PA | 604 | GJ16861-PA | 71..489 | 83..518 | 555 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21375-PA | 715 | GK21375-PA | 47..712 | 33..691 | 2475 | 68.1 | Plus |
Dwil\GK17089-PA | 743 | GK17089-PA | 110..569 | 61..519 | 688 | 34 | Plus |
Dwil\GK19855-PA | 677 | GK19855-PA | 143..575 | 83..532 | 534 | 30 | Plus |
Dwil\GK10749-PA | 368 | GK10749-PA | 69..342 | 231..518 | 155 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19798-PA | 693 | GE19798-PA | 1..693 | 1..698 | 3477 | 91.4 | Plus |
Dyak\GE22605-PA | 764 | GE22605-PA | 129..615 | 61..544 | 685 | 32.1 | Plus |
Dyak\GE15754-PA | 663 | GE15754-PA | 129..547 | 83..518 | 528 | 31.7 | Plus |
Dyak\GE23281-PA | 383 | GE23281-PA | 1..331 | 167..492 | 429 | 30.2 | Plus |
Dyak\GE11501-PA | 365 | GE11501-PA | 66..342 | 231..521 | 164 | 23.7 | Plus |