Clone RE64386 Report

Search the DGRC for RE64386

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:643
Well:86
Vector:pFlc-1
Associated Gene/TranscriptCG5235-RA
Protein status:RE64386.pep: gold
Preliminary Size:1172
Sequenced Size:2726

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5235 2001-12-14 Blastp of sequenced clone
CG5235 2002-01-01 Sim4 clustering to Release 2
CG5235 2003-01-01 Sim4 clustering to Release 3
CG5235 2008-04-29 Release 5.5 accounting
CG5235 2008-08-15 Release 5.9 accounting
CG5235 2008-12-18 5.12 accounting

Clone Sequence Records

RE64386.complete Sequence

2726 bp (2726 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071594

> RE64386.complete
CCCGACGCGATCACTTTGTTCAATGAAAAAAATGCAGACGCGCGAATTAC
TTGCAAACTCAACACCAAACAAGTTTCAATTTCGCCTAAAAGAGAATCAT
ATTGTTCACATACGCTAAAGTACAAGGCTAACGCCATGTCCGTTCAAGAC
GTACTATGGATCGTACTCACGGTGCAGTTGAGTTTTGGTCTTGCGTATTT
TGAAAACAATCAAAGGACGCAGGACTATGATGTCGATAAAAATGGTTCTG
TACACCACAAAAACTGGGTGCGTAACGAAATGATGGACAGCTTGGGCTTG
TACTGGCTCAAATGGTGGATAAACGCCAACGAAAATAGCATTTACTTTGA
AGTAACTGTTCACACACGAGGCTTTGCCGGCCTGGGTTTCTCCAAGGATG
GCCGGCTGGCCAGAGCGGATATGGTTTTGATGTGGGTGGATGACGCCACA
GGACATCCGAACGTCTTGGACTGCCATGGGGCGCTGCATCCTTCAAGCGG
ACCGCCGCTGCAGGACGATACTCAAAACTACGATGTCCTAGATGGCAAAC
AAAATGGGACGCACACAATCCTGAAGTTTAAACGCAAAATTGAGACCTGT
GACCCATTCGATATTCCACTCTCCGCTGATACGTTTAAGGTACTGTGGTC
CATTGGGGAAAATGATCCTATTCATGGAAACTTGGATTGGCAAGGTCAGA
GCAGAGGCGTGAAAGCTTTGCAATTGTTTTCGCCAATGTTTACGAAAAAT
AGTCACTCGATCGAAGGCATCCAAAAATGGGACATAACTGTGAACAACGT
AACAATTGATCGGTCAATGGATACACTATACTGGTGTAAAATAGTGCGAC
TACCAGAGTTAACTGGCAAACAGCATATAATTGGTTATGAGCCGCTGCTG
TCTGGTAAATACGAGAGGAATGTTGTTCACCACATGACCCTGTTTGAGTG
TCAGTCCAAGATATACTCTGGATCCGATCCTTCGTCCTGGGACCTTTGGG
TTAGGAGTGCCGGCACAGTGTGCAACAGCAACCTACTGACGCCACGCGAC
TGGGATTCGTGCTCTACGCCAGTTGCAGTTTGGTCCTTGGGATCTGATGG
ACAGTTTCTACCTCCCCACGCAGGGATCCCAATGGGCGGAGCATCTGGAG
TTAGCTATTATATGCTGGAAATACACTACGATAATCCCGATGGAAAGGAA
TCGGTGGATCACTCCGGTTTTCGAATACACTACACACCCAATCTGCGAAC
CTACGATTCCGGAATTCTAATAAGTGGTGTTTCCATTTCGGAAACGCAAC
TCATTCCGCCTGGTCAAAAGAAGTATCGATCCGTCGGCATTTGTGGGCCG
TCTTGTTCAAGCGTCATGTTCCCAAAGGATGGTATTAAAATAATATCCGG
AACGTTGCACTCACATCAAGCTGGTCGCACAATTAGTCTTCGACATGTTC
GATCTGGTAAGGAGTTGAATCCGATCATTGTTGACGAAAACTACGATTAC
AGGCACCAAAAAGTCCATCAGCTTGCCAATGAAACGGTCGTATTGCCAGG
GGATTACCTAATTACAGACTGTTCCTATGAGACAAAGTACAGAAAACGAC
CCACATTCGGGGGCTATTCCACGAAGGAGGAAATGTGTCTCACCTTTATT
ACTTATTACCCAAAGATTGAGATGTCCGGATGTTATAGTATGACACCAGT
GCGTGAGTTTTTCGAGATGTTCCGTGTGTACCAATTCTATTCCTTAAATA
TGACCGATGTCGAGAACATGTTTCTCTACAACAGTGACTACACCGACTAC
AGTAAACAGGCGAAGAATGCGACAAACAAACCAAATTCCGGAAAAACGTC
CAAAGAAGACGTCATCTACCAGGAGTCTTTGTTAAACAAGCTTGTTATAT
CCGACCCAGCCGAATTTCACGATCGCACATTTCTATCGCATTTAAATCAG
TTGCCTTGGCATGATCCTCTCTTTACGAAACGTGTTGAACAAGCATTTAT
AACCGGAACACATATGACGTTTTGTCGCGTATCCAAGGATTCATTATCAA
TTCCTTCGGAAATAATTCGCTATCCCGAGTTTACAGCGTACGTGAAGCCA
CCGGCAGCTTGTTTGAATTATTTGTTCACTGATAATGAAGAACTTCGTTC
GGGAAGTTCACAATTTTTTACAGACTTTACGTTAAGTCTTTTATTACTCA
TTCAGCTCGGGTTGCAAACGACATTATTGTAAAATAAAAGTGCGTTTGAA
AGTATTATTTAAGCCATCCAAAACGTTTTCAGTGAAAATGCTAGCTTACC
AAATGAACGATTATCAAATATTCAAAATTATTCTCGTAATATGAAACATG
AAAATATATCAAATCGATATAAACTAGGTACTAACATAAAGTAATATACA
TTTTATAGAGATTTAAGGTGCTTTTAAGAACTTTTTAATTTAATTTTAAT
TTAAGAACTTTTAAATTGGATTTAAAAATTTTGCACTAAATGTAGAAAGT
AAAAAATACACCTCCGACTTGCAAACCAATCAAATAATTTTCTCTTAAAT
AAGTTAAATTACCGACAATAAAATAAGGATTAACTTATATTTATGTTAAG
GTTTTCATATTTTTGAAGATTTACAGAATGTATGCATCTTTTCAGGGATA
CTAATATTAGCCTATATTAAAAATGTATGCAGTTTTCAAATAAAGTTAAT
TTTTATAAACAAAAAAAAAAAAAAAA

RE64386.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5235-RA 2731 CG5235-RA 26..2731 1..2706 13530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16077385..16079472 2709..625 10255 99.5 Minus
chr3L 24539361 chr3L 16079527..16080151 625..1 3110 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16087624..16089708 2709..625 10425 100 Minus
3L 28110227 3L 16089763..16090387 625..1 3125 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16080724..16082808 2709..625 10425 100 Minus
3L 28103327 3L 16082863..16083487 625..1 3125 100 Minus
Blast to na_te.dros performed 2019-03-16 14:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 676..817 2362..2508 138 59.1 Plus
Penelope 804 Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). 231..372 2362..2508 138 59.1 Plus
TAHRE 10463 TAHRE OSV 10463bp 13..175 2628..2464 119 56.2 Minus
gtwin 7411 gtwin GTWIN 7411bp 4308..4402 76..174 115 64.4 Plus

RE64386.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:58:44 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16077413..16079472 625..2684 98 <- Minus
chr3L 16079528..16080151 1..624 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:40 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2097 136..2232 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:03 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2097 136..2232 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:03:03 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2097 136..2232 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:38:39 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2097 136..2232 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:35:16 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2097 136..2232 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:09:41 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2704 1..2704 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:03 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2706 1..2706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:03 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 6..2711 1..2706 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:38:39 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 1..2704 1..2704 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:16 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
CG5235-RA 6..2711 1..2706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:58:44 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16087623..16089708 625..2710 99 <- Minus
3L 16089764..16090387 1..624 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:58:44 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16087623..16089708 625..2710 99 <- Minus
3L 16089764..16090387 1..624 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:58:44 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16087623..16089708 625..2710 99 <- Minus
3L 16089764..16090387 1..624 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:03 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16080723..16082808 625..2710 99 <- Minus
arm_3L 16082864..16083487 1..624 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:21:42 Download gff for RE64386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16080723..16082808 625..2710 99 <- Minus
3L 16082864..16083487 1..624 100   Minus

RE64386.hyp Sequence

Translation from 0 to 2231

> RE64386.hyp
PDAITLFNEKNADARITCKLNTKQVSISPKRESYCSHTLKYKANAMSVQD
VLWIVLTVQLSFGLAYFENNQRTQDYDVDKNGSVHHKNWVRNEMMDSLGL
YWLKWWINANENSIYFEVTVHTRGFAGLGFSKDGRLARADMVLMWVDDAT
GHPNVLDCHGALHPSSGPPLQDDTQNYDVLDGKQNGTHTILKFKRKIETC
DPFDIPLSADTFKVLWSIGENDPIHGNLDWQGQSRGVKALQLFSPMFTKN
SHSIEGIQKWDITVNNVTIDRSMDTLYWCKIVRLPELTGKQHIIGYEPLL
SGKYERNVVHHMTLFECQSKIYSGSDPSSWDLWVRSAGTVCNSNLLTPRD
WDSCSTPVAVWSLGSDGQFLPPHAGIPMGGASGVSYYMLEIHYDNPDGKE
SVDHSGFRIHYTPNLRTYDSGILISGVSISETQLIPPGQKKYRSVGICGP
SCSSVMFPKDGIKIISGTLHSHQAGRTISLRHVRSGKELNPIIVDENYDY
RHQKVHQLANETVVLPGDYLITDCSYETKYRKRPTFGGYSTKEEMCLTFI
TYYPKIEMSGCYSMTPVREFFEMFRVYQFYSLNMTDVENMFLYNSDYTDY
SKQAKNATNKPNSGKTSKEDVIYQESLLNKLVISDPAEFHDRTFLSHLNQ
LPWHDPLFTKRVEQAFITGTHMTFCRVSKDSLSIPSEIIRYPEFTAYVKP
PAACLNYLFTDNEELRSGSSQFFTDFTLSLLLLIQLGLQTTLL*

RE64386.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5235-PB 698 CG5235-PB 1..698 46..743 3770 100 Plus
CG5235-PA 698 CG5235-PA 1..698 46..743 3770 100 Plus
olf413-PC 760 CG12673-PC 123..584 106..564 674 33.2 Plus
olf413-PB 760 CG12673-PB 123..584 106..564 674 33.2 Plus
Tbh-PC 670 CG1543-PC 136..567 128..577 538 32.2 Plus

RE64386.pep Sequence

Translation from 135 to 2231

> RE64386.pep
MSVQDVLWIVLTVQLSFGLAYFENNQRTQDYDVDKNGSVHHKNWVRNEMM
DSLGLYWLKWWINANENSIYFEVTVHTRGFAGLGFSKDGRLARADMVLMW
VDDATGHPNVLDCHGALHPSSGPPLQDDTQNYDVLDGKQNGTHTILKFKR
KIETCDPFDIPLSADTFKVLWSIGENDPIHGNLDWQGQSRGVKALQLFSP
MFTKNSHSIEGIQKWDITVNNVTIDRSMDTLYWCKIVRLPELTGKQHIIG
YEPLLSGKYERNVVHHMTLFECQSKIYSGSDPSSWDLWVRSAGTVCNSNL
LTPRDWDSCSTPVAVWSLGSDGQFLPPHAGIPMGGASGVSYYMLEIHYDN
PDGKESVDHSGFRIHYTPNLRTYDSGILISGVSISETQLIPPGQKKYRSV
GICGPSCSSVMFPKDGIKIISGTLHSHQAGRTISLRHVRSGKELNPIIVD
ENYDYRHQKVHQLANETVVLPGDYLITDCSYETKYRKRPTFGGYSTKEEM
CLTFITYYPKIEMSGCYSMTPVREFFEMFRVYQFYSLNMTDVENMFLYNS
DYTDYSKQAKNATNKPNSGKTSKEDVIYQESLLNKLVISDPAEFHDRTFL
SHLNQLPWHDPLFTKRVEQAFITGTHMTFCRVSKDSLSIPSEIIRYPEFT
AYVKPPAACLNYLFTDNEELRSGSSQFFTDFTLSLLLLIQLGLQTTLL*

RE64386.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10948-PA 756 GF10948-PA 101..576 61..519 663 32.4 Plus
Dana\GF21296-PA 652 GF21296-PA 119..642 83..620 564 28.9 Plus
Dana\GF12045-PA 362 GF12045-PA 61..334 231..518 168 23.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13499-PA 693 GG13499-PA 1..693 1..698 3494 92.4 Plus
Dere\GG16246-PA 765 GG16246-PA 128..589 61..519 689 33.4 Plus
Dere\GG19681-PA 655 GG19681-PA 121..539 83..518 541 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21727-PA 697 GH21727-PA 9..686 7..688 2458 65.4 Plus
Dgri\GH14670-PA 768 GH14670-PA 127..587 61..519 685 34.1 Plus
Dgri\GH24481-PA 680 GH24481-PA 142..565 83..518 481 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5235-PB 698 CG5235-PB 1..698 1..698 3770 100 Plus
CG5235-PA 698 CG5235-PA 1..698 1..698 3770 100 Plus
olf413-PC 760 CG12673-PC 123..584 61..519 674 33.2 Plus
olf413-PB 760 CG12673-PB 123..584 61..519 674 33.2 Plus
Tbh-PC 670 CG1543-PC 136..567 83..532 538 32.2 Plus
Tbh-PB 670 CG1543-PB 136..567 83..532 538 32.2 Plus
Phm-PA 365 CG3832-PA 66..339 231..518 172 24.3 Plus
Phm-PB 365 CG3832-PB 66..339 231..518 172 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20678-PA 678 GI20678-PA 1..658 6..661 2370 66.1 Plus
Dmoj\GI13780-PA 769 GI13780-PA 127..587 61..519 679 33.7 Plus
Dmoj\GI11219-PA 655 GI11219-PA 122..540 83..518 566 32.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14102-PA 657 GL14102-PA 1..657 49..696 2535 69.9 Plus
Dper\GL25426-PA 757 GL25426-PA 118..594 61..534 680 32.6 Plus
Dper\GL15140-PA 635 GL15140-PA 102..520 83..518 551 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18755-PA 705 GA18755-PA 8..697 7..687 2610 68.9 Plus
Dpse\GA11749-PA 759 GA11749-PA 120..596 61..534 680 32.6 Plus
Dpse\GA22782-PA 643 GA22782-PA 110..528 83..518 550 31.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24448-PA 191 GM24448-PA 1..164 1..162 791 90.9 Plus
Dsec\GM22434-PA 707 GM22434-PA 126..505 61..438 536 32.7 Plus
Dsec\GM11221-PA 566 GM11221-PA 46..450 83..518 422 29.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12516-PA 697 GD12516-PA 1..697 1..698 3672 97 Plus
Dsim\Tbh-PA 561 GD16874-PA 157..445 216..518 469 33.8 Plus
Dsim\GD15022-PA 258 GD15022-PA 56..254 124..310 245 28.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20428-PA 697 GJ20428-PA 9..690 6..688 2465 66.4 Plus
Dvir\GJ13583-PA 755 GJ13583-PA 117..577 61..519 687 33.9 Plus
Dvir\GJ16861-PA 604 GJ16861-PA 71..489 83..518 555 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21375-PA 715 GK21375-PA 47..712 33..691 2475 68.1 Plus
Dwil\GK17089-PA 743 GK17089-PA 110..569 61..519 688 34 Plus
Dwil\GK19855-PA 677 GK19855-PA 143..575 83..532 534 30 Plus
Dwil\GK10749-PA 368 GK10749-PA 69..342 231..518 155 24.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19798-PA 693 GE19798-PA 1..693 1..698 3477 91.4 Plus
Dyak\GE22605-PA 764 GE22605-PA 129..615 61..544 685 32.1 Plus
Dyak\GE15754-PA 663 GE15754-PA 129..547 83..518 528 31.7 Plus
Dyak\GE23281-PA 383 GE23281-PA 1..331 167..492 429 30.2 Plus
Dyak\GE11501-PA 365 GE11501-PA 66..342 231..521 164 23.7 Plus