Clone RE64430 Report

Search the DGRC for RE64430

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:644
Well:30
Vector:pFlc-1
Associated Gene/TranscriptCycB3-RA
Protein status:RE64430.pep: gold
Preliminary Size:2460
Sequenced Size:2556

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5814 2002-01-01 Sim4 clustering to Release 2
CG5814 2002-12-10 Blastp of sequenced clone
CycB3 2008-04-29 Release 5.5 accounting
CycB3 2008-08-15 Release 5.9 accounting
CycB3 2008-12-18 5.12 accounting

Clone Sequence Records

RE64430.complete Sequence

2556 bp (2556 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003185

> RE64430.complete
TGGGCGACCGAACGCCGCGGTACGGTCACACTGCAGGCCGCATCTGCATC
TGGCATCTGGCGGTGTTTTTTTGATTTTTTACTCAGTGCTCTCTATCCCT
CCGGCCAAGCGCCATAACTCCACAAAACTCGATCCGGAATTATATTGTGA
GTTTGTGTGAATGTCTAGGCTTGATCGAGTCGACAATATCGGCAGTAGCG
AACGACTCAAGTTCTAGCCAACACAAAGACCACATTCTGCAAGGAATCCG
CTAGCGAGGATCTTGCTGAAACCAAGTGGAAGTGGAGGAGACGAGGACTC
CAGGCGCCGCGCACAAGAACACAAACAACAAACGACGAGTGCGCTCACAC
GCAAACACGCATTCAAAATGGCGCCCACAAAAGCAACAACGCGCGCGGCC
ATCACAAGCGGGCATCATCAGCTGCAGCAGGCAGTGAATCCCATCCTGGG
AGCCCTGGGAGCTGCCACTAGGAAGGGACTGACTCGGAGGGCGGCTGCCA
CGGGAAACATCGATCCGAATGTGGAGAATATGCAGACGCGCGCCAAACGC
AAGGCCGACCACAGTCCAATTAAAAATGACAAAATCAAGCGCTCGGCGCT
GGGTAACCTGACCAACAATGTTAAGATCATGACACTGCATCCGGCACAGG
ATGAGGAGCAGTCGGGCGTGGGCAAAAAGCCAACGGCCCAGCAGCTGCAG
GCCCTGATGGATGCTAAGAAACAGGAGAATCTCAGCGTAAATGTCTTTGG
CGCCAGTAAGATGACTACGCGCGCCTCCAGTAAAGTGGAGGATTCGGTGG
AGAACTGCCACAAAGTGCTCGATAAGCTGGAAGAGGCGTTGGCCAGGCCC
AAACCGCGCCCCAAGGCAGTGCCTGCCGCAAAAAAGACCGTTTTGGGGGA
GGTTCAGCTACCGGCCATGCCAAATCCTATGCAGATTCCCGTTTTACTGC
CGCCCACGCACAATCTGGCTGCTCCCCAGGTTGCCGCCGTCAAGCCAGTT
CGTCGGATCTCCAATGACTTCAACAAGACTGAGGACAGCCTGTACATGTC
CGCGCTGGAGGATGTCTCCAGTTGCGACTCCATGCGGCTGTCTGGAAACT
TTGAGGCGGCGCGACGTCGCTCCGCCAAGTTGCAGCAAAAGACTGAGCAG
CAGCCACAGCCGCTGTTGCTGACACTCCCAGAGACTGCTCCAAGCCAGGT
GGTGCCCATTCCGCCAGTGCCCGAGGAAGTAGAGGACTTCGACCGCAAGA
ACTGGGACGATCCCTTCCAGGTGTCCCACTACGCCATGGATATATTCAAC
TACCTCAAAGTGCGCGAAGCGGAATTCCCCATTGCCGACTATATGCCCAG
GCAGATCCATCTGACCACCTGGATGCGCACCCTGTTGGTCGACTGGATGG
TGGAGGTGCAGGAAACGTTCGAGCTGAACCACGAGACTCTGTACCTAGCG
GTTAAGATCGTCGATCTGTATCTCTGCCGCGAGGTGATCAACAAAGAGAA
GCTGCAACTTCTGGGCGCCGCTGCCTTCTTTATTGCCTGCAAGTACGATG
AGCGACAGCCGCCGCTTATAGAGGATTTTTTGTATATCTGCGATGGTGCT
TATAATCACGACGAGCTGGTGCGAATGGAGCGGGAGACGCTGCGCGTTAT
CAAGTACGATCTGGGCATCCCGCTCTCGTACCGTTTCCTGCGCCGCTATG
CCCGATGCGCCAAGGTGCCTATGCCCACGCTGACCCTGGCTCGATACATC
CTGGAATTGTCGCTCATGGATTACGCCAATATTTCGTTCAGTGACTCGCA
GATGGCTTCGGCCGCACTGTTCATGGCACTGCGTATGCACGGCGGTCCGG
GGCAGCTGGACAAGCAGACGTGGACATCGACGCTTATCTACTACACCGGC
TATCAATTGGCGGACTTTGCTGAAATTGTGACCGCGCTCAATGCAGGACT
GCATCGCAAGCCACGGGCCACCATCAAGACGATACGGAACAAGTACTCGC
ACAAAATATTCCACGAGGTGGCCAAGGTGCCGCTGCTGACGAACCAGGAG
CTCTTCCAGGGCAACCTTGACCTGAACGAAAGCAATCTGTCGTAGGACAG
CCTCAAAGTTTAGCCAAATTCAACATGATACGATACGCTTCACTTAGGCT
CTAAGACGCTTCTATTCCCAATATTAGCCCCATCCCGACGAAACAGCGGA
TCCCCGCCTTAATCTAAAAACCCCTGATTTTACCCCTTACCTAGTGTTCC
CGTCAAGTCCTCGCAATTTATTATATTTTAATTATTATTGTGACCTTCGC
ATTATTGACATGTTTTTTGCATAAATATTATGTTAAGAGTGCTTTTGTTT
CTTTTTGCCATGTATTATTGTTTAATTTTCCCACATACCGCATACGTAGC
CGAACACAATCAATCTAAACTCGAAAGGCGACATTATCTTTAGCACCCCC
ACCCAAAAAATCCCAAAACGATTCATGTTTTAATATGTACGTTAGTCTTA
AGAGATGCCAGCATTAAATAAACCTAACTCGTAAGCCACCAAAAAAAAAA
AAAAAA

RE64430.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
CycB3-RA 2543 CycB3-RA 3..2543 3..2543 12705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20691542..20694079 2540..3 12690 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24868353..24870893 2543..3 12705 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24609184..24611724 2543..3 12705 100 Minus
Blast to na_te.dros performed 2019-03-16 03:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1103..1215 2268..2379 157 62.3 Plus
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 219..285 1127..1195 133 68.1 Plus

RE64430.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:44:46 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20691542..20694081 1..2540 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:41 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..1728 368..2095 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:00 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..1728 368..2095 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:48:30 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..1728 368..2095 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:51:28 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..1728 368..2095 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:13:14 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..1728 368..2095 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:18:27 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..2540 1..2540 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:00 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..2540 1..2540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:48:30 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..2461 80..2540 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:51:28 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..2540 1..2540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:13:14 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
CycB3-RA 1..2461 80..2540 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:44:46 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24868356..24870895 1..2540 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:44:46 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24868356..24870895 1..2540 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:44:46 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24868356..24870895 1..2540 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:48:30 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20694078..20696617 1..2540 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:23:20 Download gff for RE64430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24609187..24611726 1..2540 99   Minus

RE64430.pep Sequence

Translation from 367 to 2094

> RE64430.pep
MAPTKATTRAAITSGHHQLQQAVNPILGALGAATRKGLTRRAAATGNIDP
NVENMQTRAKRKADHSPIKNDKIKRSALGNLTNNVKIMTLHPAQDEEQSG
VGKKPTAQQLQALMDAKKQENLSVNVFGASKMTTRASSKVEDSVENCHKV
LDKLEEALARPKPRPKAVPAAKKTVLGEVQLPAMPNPMQIPVLLPPTHNL
AAPQVAAVKPVRRISNDFNKTEDSLYMSALEDVSSCDSMRLSGNFEAARR
RSAKLQQKTEQQPQPLLLTLPETAPSQVVPIPPVPEEVEDFDRKNWDDPF
QVSHYAMDIFNYLKVREAEFPIADYMPRQIHLTTWMRTLLVDWMVEVQET
FELNHETLYLAVKIVDLYLCREVINKEKLQLLGAAAFFIACKYDERQPPL
IEDFLYICDGAYNHDELVRMERETLRVIKYDLGIPLSYRFLRRYARCAKV
PMPTLTLARYILELSLMDYANISFSDSQMASAALFMALRMHGGPGQLDKQ
TWTSTLIYYTGYQLADFAEIVTALNAGLHRKPRATIKTIRNKYSHKIFHE
VAKVPLLTNQELFQGNLDLNESNLS*

RE64430.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18004-PA 570 GF18004-PA 1..570 1..575 2443 81.2 Plus
Dana\GF11326-PA 514 GF11326-PA 224..494 288..552 423 38.2 Plus
Dana\GF24509-PA 466 GF24509-PA 178..454 275..563 393 32.9 Plus
Dana\GF14977-PA 713 GF14977-PA 360..457 336..432 201 37.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12306-PA 575 GG12306-PA 1..575 1..575 2882 95.5 Plus
Dere\GG20092-PA 529 GG20092-PA 239..509 288..552 421 37.1 Plus
Dere\GG13881-PA 491 GG13881-PA 194..449 292..554 387 33.2 Plus
Dere\GG24197-PA 708 GG24197-PA 361..458 336..432 206 38.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16367-PA 589 GH16367-PA 1..585 1..573 2192 71 Plus
Dgri\GH24294-PA 494 GH24294-PA 33..492 47..575 1168 50.8 Plus
Dgri\GH13591-PA 641 GH13591-PA 140..426 287..575 738 52.8 Plus
Dgri\GH22089-PA 568 GH22089-PA 280..551 287..552 456 37.2 Plus
Dgri\GH13591-PA 641 GH13591-PA 495..640 427..572 453 61.6 Plus
Dgri\GH16723-PA 484 GH16723-PA 196..451 292..554 380 33.6 Plus
Dgri\GH13591-PA 641 GH13591-PA 1..114 1..124 179 45.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CycB3-PB 575 CG5814-PB 1..575 1..575 2958 100 Plus
CycB3-PA 575 CG5814-PA 1..575 1..575 2958 100 Plus
CycB-PC 500 CG3510-PC 210..480 288..552 405 36.1 Plus
CycB-PB 524 CG3510-PB 234..504 288..552 405 36.1 Plus
CycB-PE 528 CG3510-PE 238..508 288..552 405 36.1 Plus
CycB-PA 530 CG3510-PA 240..510 288..552 405 36.1 Plus
CycA-PC 490 CG5940-PC 198..445 301..552 368 33.9 Plus
CycA-PA 491 CG5940-PA 199..446 301..552 368 33.9 Plus
CycE-PB 602 CG3938-PB 254..351 336..432 196 38.8 Plus
CycE-PD 709 CG3938-PD 361..458 336..432 196 38.8 Plus
CycE-PE 709 CG3938-PE 361..458 336..432 196 38.8 Plus
CycE-PA 709 CG3938-PA 361..458 336..432 196 38.8 Plus
CycE-PC 709 CG3938-PC 361..458 336..432 196 38.8 Plus
CycE-PF 712 CG3938-PF 364..461 336..432 196 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22195-PA 575 GI22195-PA 1..574 1..575 2184 73.2 Plus
Dmoj\GI19224-PA 519 GI19224-PA 209..509 267..559 450 34.9 Plus
Dmoj\GI13452-PA 525 GI13452-PA 223..489 292..568 375 32.3 Plus
Dmoj\GI17292-PA 647 GI17292-PA 276..373 336..432 209 41.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13555-PA 554 GL13555-PA 1..554 27..575 2305 79.6 Plus
Dper\GL18583-PA 439 GL18583-PA 24..429 68..567 1259 56.7 Plus
Dper\GL10703-PA 559 GL10703-PA 269..539 288..552 435 37.2 Plus
Dper\GL13647-PA 356 GL13647-PA 47..337 275..559 400 33.9 Plus
Dper\GL19431-PA 338 GL19431-PA 39..318 269..552 351 32.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19151-PA 576 GA19151-PA 1..576 1..575 2341 78 Plus
Dpse\GA25706-PA 434 GA25706-PA 7..424 57..567 1240 55.7 Plus
Dpse\GA17491-PA 516 GA17491-PA 226..496 288..552 434 37.2 Plus
Dpse\GA25959-PA 349 GA25959-PA 39..329 269..552 420 34.7 Plus
Dpse\GA26976-PA 356 GA26976-PA 47..337 275..559 392 33.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23449-PA 575 GM23449-PA 1..575 1..575 2953 96 Plus
Dsec\GM15608-PA 530 GM15608-PA 240..510 288..552 420 37.1 Plus
Dsec\GM24703-PA 490 GM24703-PA 192..445 292..552 379 33.1 Plus
Dsec\GM14232-PA 706 GM14232-PA 359..456 336..432 206 38.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18256-PA 575 GD18256-PA 1..575 1..575 3048 98.4 Plus
Dsim\GD15503-PA 528 GD15503-PA 238..508 288..552 422 36.7 Plus
Dsim\GD12771-PA 490 GD12771-PA 192..458 292..568 377 31.9 Plus
Dsim\GD21944-PA 701 GD21944-PA 354..451 336..432 206 38.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24313-PA 575 GJ24313-PA 1..572 1..573 2210 74.5 Plus
Dvir\GJ20298-PA 581 GJ20298-PA 263..564 267..552 461 34.8 Plus
Dvir\GJ11813-PA 511 GJ11813-PA 213..480 292..569 398 34.5 Plus
Dvir\GJ17903-PA 624 GJ17903-PA 268..365 336..432 197 38.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22753-PA 583 GK22753-PA 1..581 1..570 1980 68.2 Plus
Dwil\GK21840-PA 557 GK21840-PA 269..546 288..559 408 36.7 Plus
Dwil\GK13671-PA 520 GK13671-PA 208..474 292..568 400 34.1 Plus
Dwil\GK13804-PA 418 GK13804-PA 134..400 300..567 298 32.8 Plus
Dwil\GK24275-PA 590 GK24275-PA 247..345 336..433 203 37.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10761-PA 576 GE10761-PA 1..576 1..575 2973 96 Plus
Dyak\GE14470-PA 544 GE14470-PA 254..524 288..552 425 35.8 Plus
Dyak\GE11834-PA 529 GE11834-PA 239..509 288..552 424 35.4 Plus
Dyak\GE20173-PA 484 GE20173-PA 187..442 292..554 382 33.2 Plus
Dyak\GE19392-PA 713 GE19392-PA 366..463 336..432 206 38.8 Plus

RE64430.hyp Sequence

Translation from 367 to 2094

> RE64430.hyp
MAPTKATTRAAITSGHHQLQQAVNPILGALGAATRKGLTRRAAATGNIDP
NVENMQTRAKRKADHSPIKNDKIKRSALGNLTNNVKIMTLHPAQDEEQSG
VGKKPTAQQLQALMDAKKQENLSVNVFGASKMTTRASSKVEDSVENCHKV
LDKLEEALARPKPRPKAVPAAKKTVLGEVQLPAMPNPMQIPVLLPPTHNL
AAPQVAAVKPVRRISNDFNKTEDSLYMSALEDVSSCDSMRLSGNFEAARR
RSAKLQQKTEQQPQPLLLTLPETAPSQVVPIPPVPEEVEDFDRKNWDDPF
QVSHYAMDIFNYLKVREAEFPIADYMPRQIHLTTWMRTLLVDWMVEVQET
FELNHETLYLAVKIVDLYLCREVINKEKLQLLGAAAFFIACKYDERQPPL
IEDFLYICDGAYNHDELVRMERETLRVIKYDLGIPLSYRFLRRYARCAKV
PMPTLTLARYILELSLMDYANISFSDSQMASAALFMALRMHGGPGQLDKQ
TWTSTLIYYTGYQLADFAEIVTALNAGLHRKPRATIKTIRNKYSHKIFHE
VAKVPLLTNQELFQGNLDLNESNLS*

RE64430.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CycB3-PB 575 CG5814-PB 1..575 1..575 2958 100 Plus
CycB3-PA 575 CG5814-PA 1..575 1..575 2958 100 Plus
CycB-PC 500 CG3510-PC 210..480 288..552 405 36.1 Plus
CycB-PB 524 CG3510-PB 234..504 288..552 405 36.1 Plus
CycB-PE 528 CG3510-PE 238..508 288..552 405 36.1 Plus