Clone RE64534 Report

Search the DGRC for RE64534

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:645
Well:34
Vector:pFlc-1
Associated Gene/TranscriptCG10208-RA
Protein status:RE64534.pep: gold
Preliminary Size:900
Sequenced Size:1079

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10208 2001-12-14 Blastp of sequenced clone
CG10208 2002-01-01 Sim4 clustering to Release 2
CG10208 2008-04-29 Release 5.5 accounting
CG10208 2008-08-15 Release 5.9 accounting
CG10208 2008-12-18 5.12 accounting

Clone Sequence Records

RE64534.complete Sequence

1079 bp (1079 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071595

> RE64534.complete
AGTAGTCATTCGATCGCTAGTTAGACCACAACATATTTACTCTCTGATTA
GCTTCTTACCTGCTGCACGAGCGAAAAACGTTTCACTGGCCATGGCTGCT
GTTGTTCCCACTGAAACCTCCGCCGCCCCCGCCTCCTGGTGTGGGCGCGG
TGCCAAGCCCCGAACCTTTGAAAAGGAACCGCCAGTCATCTGCTATGACA
AGCCCGCAGCTTCGATCGTTTCGAAGGAGGAGTATGATAATAAACGTTAT
CGTGCCCTGACTGGCGATCTTGTGGAGACACTGATTGTGCCCAAACGGGA
GGCACGCACCTGGACAATGCAAGAGGGTGATTTGTGCCGCGTCACTGTCC
ACGAAGGTTCTCAGGTGGGCGACATGAACTTTTGGAATCTGGAGAACACC
GCCGAGCGCTTCTACTCGGGCAAGACGCGCCAGCTGCACTCGTCGCATCT
GCGCGTTTACGATCGTCTGTGGAGCTGCCTGCCCCACCTGCGTCCCATGG
CCACCTTTGTGTTTGATTCCCTTGCCGCCTATGGCATCGATGAGGATGGC
GGTGCTCTGCACGACGTAATTGGAACACGGTGCGACGACTACACCTACAA
GCTAATCACGGGCAAGGATCGGGTGGGCAGTTGCCACAGTTCCCTAGTCA
AGGCGGTGGTGGAGGAGCGCGGGCTGACCGAGCAGGATGTACACGACGTG
TGGAACATCTTTATGTGCACCGGATTTACACGGGACACGCATCAGTATTT
CTGCAAGGCAAGTCCAGCGCGCAAGGGGGATTTCATTGAGTTTGTGGCCG
ACATGAATCTTCTGGTGGCTCTGAGCGCCTGTCCACAGGGCGATGTCTCC
ATCGCAGTGGGCGCCGATGTGCCGGACGACAAGTGCCACCCCCTCAAGGT
CGAAGTGTTCCGTCGCAAGTAAACAGAACCATTTTCATTCCGTGTGCGGA
AATCTGGTTCTAACAGCGTGCCATTTATGTAAACAGTGCCATAGAGATGT
GCAAGATCATCTTCCGTATTGATGACGAATTATCAATACAAATATATTAC
TGCAATAATTAAAGAAAAAAAAAAAAAAA

RE64534.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-RA 1192 CG10208-RA 97..1157 1..1061 5305 100 Plus
CG10208.a 1072 CG10208.a 246..1068 239..1061 4115 100 Plus
CG10208.a 1072 CG10208.a 1..239 1..239 1195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19596421..19597243 1061..239 4025 99.3 Minus
chr3R 27901430 chr3R 19597310..19597547 238..1 1160 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23772997..23773819 1061..239 4115 100 Minus
3R 32079331 3R 23773886..23774123 238..1 1190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23513828..23514650 1061..239 4115 100 Minus
3R 31820162 3R 23514717..23514954 238..1 1190 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:31:06 has no hits.

RE64534.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:31:47 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19596418..19597243 239..1064 99 <- Minus
chr3R 19597310..19597547 1..238 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:45 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..831 92..922 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:02 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..831 92..922 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:35 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..831 92..922 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:12 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..831 92..922 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:54 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..831 92..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:44 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:02 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 18..1077 1..1060 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:35 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 5..1064 1..1060 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:13 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:54 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
CG10208-RA 5..1064 1..1060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:47 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23772994..23773819 239..1064 99 <- Minus
3R 23773886..23774123 1..238 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:47 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23772994..23773819 239..1064 99 <- Minus
3R 23773886..23774123 1..238 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:47 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23772994..23773819 239..1064 99 <- Minus
3R 23773886..23774123 1..238 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:35 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19598716..19599541 239..1064 99 <- Minus
arm_3R 19599608..19599845 1..238 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:23 Download gff for RE64534.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23513825..23514650 239..1064 99 <- Minus
3R 23514717..23514954 1..238 100   Minus

RE64534.hyp Sequence

Translation from 0 to 921

> RE64534.hyp
VVIRSLVRPQHIYSLISFLPAARAKNVSLAMAAVVPTETSAAPASWCGRG
AKPRTFEKEPPVICYDKPAASIVSKEEYDNKRYRALTGDLVETLIVPKRE
ARTWTMQEGDLCRVTVHEGSQVGDMNFWNLENTAERFYSGKTRQLHSSHL
RVYDRLWSCLPHLRPMATFVFDSLAAYGIDEDGGALHDVIGTRCDDYTYK
LITGKDRVGSCHSSLVKAVVEERGLTEQDVHDVWNIFMCTGFTRDTHQYF
CKASPARKGDFIEFVADMNLLVALSACPQGDVSIAVGADVPDDKCHPLKV
EVFRRK*

RE64534.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-PA 276 CG10208-PA 1..276 31..306 1486 100 Plus

RE64534.pep Sequence

Translation from 91 to 921

> RE64534.pep
MAAVVPTETSAAPASWCGRGAKPRTFEKEPPVICYDKPAASIVSKEEYDN
KRYRALTGDLVETLIVPKREARTWTMQEGDLCRVTVHEGSQVGDMNFWNL
ENTAERFYSGKTRQLHSSHLRVYDRLWSCLPHLRPMATFVFDSLAAYGID
EDGGALHDVIGTRCDDYTYKLITGKDRVGSCHSSLVKAVVEERGLTEQDV
HDVWNIFMCTGFTRDTHQYFCKASPARKGDFIEFVADMNLLVALSACPQG
DVSIAVGADVPDDKCHPLKVEVFRRK*

RE64534.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18737-PA 273 GF18737-PA 1..273 1..276 1332 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12403-PA 276 GG12403-PA 1..276 1..276 1431 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11101-PA 269 GH11101-PA 2..269 9..276 1267 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10208-PA 276 CG10208-PA 1..276 1..276 1486 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24506-PA 269 GI24506-PA 2..269 9..276 1253 83.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24269-PA 270 GL24269-PA 3..270 9..276 1275 84.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10156-PA 270 GA10156-PA 6..270 12..276 1275 85.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23538-PA 276 GM23538-PA 1..276 1..276 1450 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18352-PA 276 GD18352-PA 1..276 1..276 1466 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24643-PA 269 GJ24643-PA 2..269 9..276 1265 83.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13520-PA 273 GK13520-PA 4..273 7..276 1285 84.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23922-PA 276 GE23922-PA 1..276 1..276 1451 96.4 Plus