Clone RE64552 Report

Search the DGRC for RE64552

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:645
Well:52
Vector:pFlc-1
Associated Gene/TranscriptSk1-RA
Protein status:RE64552.pep: gold
Preliminary Size:2020
Sequenced Size:2629

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1747 2002-01-01 Sim4 clustering to Release 2
CG1747 2003-01-01 Sim4 clustering to Release 3
CG1747 2003-07-07 Blastp of sequenced clone
Sk1 2008-04-29 Release 5.5 accounting
Sk1 2008-08-15 Release 5.9 accounting
Sk1 2008-12-18 5.12 accounting

Clone Sequence Records

RE64552.complete Sequence

2629 bp (2629 high quality bases) assembled on 2003-07-07

GenBank Submission: AY119652

> RE64552.complete
AGTACGAATTGTCGTGTCAAGCGCACAGGAAGCGATCGCAACCCGGATCG
GATTGGATCGGCCGGATCGAGCCACCATATGTACTATATACAAACACACA
TATATATATAGATATATCGCAGTCTTTACGGTGAACAGCGTCGATCGCAT
GTGGACAAACAATTAAATACAAGGTCAAAGAAGCGCTAAAAAGTGAAGTT
AAGTCGAAACAAACACGAAGATACCAAAGAAGATATGACGGCCAACACAG
GGACGTCGGGTGAAAATCTGATGGGAAATGGTGGAAAGACGCATGAACCC
TCCACGCCCACTTCGGATACGGAAGTGGCCAGCGGCACGCCAACGGAACT
GAGCGAAATCTTCTTCGTGGACAATAGCCGGCGCAAGCAGAGCATCAAAA
TCCAGGTGAAACTATGCCCGGAAGGCGTTTACCTGCGACGCGAAACCGAG
GAAGATGATCACATCAATGAGCAGCTGATCAGGATCGATGATATCATAGG
ATCACGCTACGGACGGCGTTTGAAGAAACGAGCCCGAGGCGGTCTAAACT
CCTGCCGCAATCCAAATGTTCCGGGCCAGGAGGCGGATTCGGAACCGGAT
AGCGATAATAGCGCCTATTTGTACATCTATGCATATTTGAAGAAGGAGAA
ACCGTTGCGACGTGTCCAAACGCTCCGGATTCTACGCTTTCGTTCGAGCA
ATGACTACGGAGTGAATCTACAGACCGCCGAGATGTGGCATCATACGATT
CGAAAGCACAAGCGTGGCAATGGCAGCAGTTCGCCCGCCGATTGTGGCAA
ACAGTTGCTCATCCTACTGAATCCGAAATCCGGTTCGGGCAAAGGGCGTG
AGCTCTTCCAGAAACAGGTGGCACCTTTGCTGACGGAAGCAGAGGTGCAA
TACGATCTCCAGATCACCACACATCCGCAGTATGCCAAGGAGTTCGTGCG
GACCAGAAGGGATCTGCTGACACGCTATTCGGGCATTGTGGTTGCCTCCG
GCGATGGTCTATTCTACGAAGTGCTCAATGGGCTAATGGAACGCATGGAT
TGGCGCCGAGCCTGCAGGGAGCTACCGCTTGGCATTATACCATGTGGTTC
CGGGAATGGTCTGGCCAAAAGTGTGGCCCATCATTGCAATGAACCGTACG
AACCGAAGCCCATTCTCCACGCCACCTTGACCTGCATGGCGGGCAAAAGT
ACACCCATGGATGTGGTCAGAGTGGAGCTGGCGACGCGGGACAAGCACTT
TGTGATGTACTCCTTCCTGTCGGTGGGCTGGGGTCTGATAGCCGACATCG
ATATAGAGAGCGAGCGATTGAGATCGATTGGAGCGCAAAGGTTTACGCTG
TGGGCCATCAAGCGATTGATCGGGCTGCGCAGCTACAAAGGCCGAGTGTC
CTATCTACTGGGCAAGGGCAAGAAGGAACCACCAGTGGAAGCGGCTCGAG
AGTTGCCTGCAGAATCAACGGCTGCAGGAATCCGCTCATCTCTGCCTCTG
AATGCCGGGGAATTCCATGATCTACCCGAGGAGGAGGAGGGGGAGGCGGT
CTTGGATGGAGAACAGTTCGCCGATGCCATATCTTTGGATCGTTCGGTTT
ACCGCCAGCATGCCGACAGTTGGCACTCGGCCATGTCCAGGCGAACGGCA
TATTACTCCCTGGGCGGACCCAGTATGCGATCCAATCGCAGCCGGATGAG
CATTAGCCAGCGGATCGAGGCAGCAAATGCGGAATTCGCTGAGAGGGTGC
CAACGGGCACCATTCCACCATTACAGATGCCACTGCTCAGCAGCGATGGT
TGGATCTGCGAGGATGGTGACTTTGTGATGGTCCATGCCGCCTATACCAC
CCATCTCTCCTCCGATGTCTTCTTTGCGCCCGAATCCCGTCTGGACGATG
GCCTCATCTACCTGGTGATCATCCGGAGAGGCGTTAGTCGCCATCAGCTG
CTCAATTTCATGCTGAACCTAAACGCAGGCACCCATCTGCCCATCGGCGA
GGATCCGTTCATCAAGGTGGTGCCTTGTCGGGCATTCCGCATCGAGCCGA
GCAGCTCCGATGGCATCCTGGTGGTGGACGGCGAGCGGGTGGAATATGGA
CCCATTCAGGCGGAGGTTATGCCCGGCCTGATCAATGTGATGACCACCAG
TGGGCAGTAGTGAAATATTAAATCCGTGTGCTTTGCAAAGCCTTAATCAT
AACGAGATACATTCGAAGAATGTCAACATTCAATAGCTACTTTAGATCAA
ACTTAGTTTATAAGAAGTTGCCTTTCCAATTAATAACCCTTACTAAATTC
ATAACTTTTTTATATCTGCTAGGAACTTTTTCCAAAGTTTACGCATTTTG
ACATTATTAGGTGGTAAAGTTCACAAAATTTCTATTATCTCTGTTTCTAT
TGTTAGTGAAAACCCATTCTCATGGCTCTGAAACGCAATCTGTAATTTTT
CCATCAGCCCATCAAAAAAAAAAAAGGAACTTCACACTATGCACTTAAGT
AGTTGGTTATAAGTTGTTTTCTATTATTTTTTTTTTTTTTAATCGGTCGA
TAGTGTTAATTATTTTAAGAACCATACGTAGACAAATAATAAACCAAAAT
GCTATAAAAAATGTTAAAAAAAAAAAAAA

RE64552.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sk1-RB 2625 Sk1-RB 10..2623 1..2614 13070 100 Plus
Sk1.b 2537 Sk1.b 88..2535 167..2614 12240 100 Plus
Sk1-RA 2472 Sk1-RA 29..2472 169..2612 12220 100 Plus
Sk1.b 2537 Sk1.b 10..89 1..80 400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11334744..11337190 169..2614 12095 99.7 Plus
chrX 22417052 chrX 11333713..11333880 1..168 840 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11443567..11446019 169..2621 12235 99.9 Plus
X 23542271 X 11442541..11442708 1..168 840 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11451665..11454117 169..2621 12235 99.9 Plus
X 23527363 X 11450639..11450806 1..168 840 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:51:00 has no hits.

RE64552.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:52:02 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11333713..11333880 1..168 100 -> Plus
chrX 11334744..11337190 169..2615 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:48 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RA 1..1926 235..2160 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:30 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RA 1..1926 235..2160 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:52 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RB 1..1926 235..2160 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:10 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RA 1..1926 235..2160 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:07 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RB 1..1926 235..2160 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:32:46 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RB 1..2614 1..2614 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:30 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RB 1..2614 1..2614 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:52 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RB 3..2616 1..2614 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:11 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RB 1..2614 1..2614 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:07 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
Sk1-RB 3..2616 1..2614 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:02 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
X 11442541..11442708 1..168 100 -> Plus
X 11443567..11446012 169..2615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:02 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
X 11442541..11442708 1..168 100 -> Plus
X 11443567..11446012 169..2615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:02 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
X 11442541..11442708 1..168 100 -> Plus
X 11443567..11446012 169..2615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:52 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11336574..11336741 1..168 100 -> Plus
arm_X 11337600..11340045 169..2615 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:19 Download gff for RE64552.complete
Subject Subject Range Query Range Percent Splice Strand
X 11451665..11454110 169..2615 99   Plus
X 11450639..11450806 1..168 100 -> Plus

RE64552.pep Sequence

Translation from 234 to 2159

> RE64552.pep
MTANTGTSGENLMGNGGKTHEPSTPTSDTEVASGTPTELSEIFFVDNSRR
KQSIKIQVKLCPEGVYLRRETEEDDHINEQLIRIDDIIGSRYGRRLKKRA
RGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRIL
RFRSSNDYGVNLQTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSG
SGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLTRYSG
IVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHH
CNEPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWG
LIADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPP
VEAARELPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQFADAIS
LDRSVYRQHADSWHSAMSRRTAYYSLGGPSMRSNRSRMSISQRIEAANAE
FAERVPTGTIPPLQMPLLSSDGWICEDGDFVMVHAAYTTHLSSDVFFAPE
SRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRA
FRIEPSSSDGILVVDGERVEYGPIQAEVMPGLINVMTTSGQ*

RE64552.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22547-PA 644 GF22547-PA 41..644 33..641 2782 85.7 Plus
Dana\GF24262-PA 659 GF24262-PA 10..657 29..637 1229 41.5 Plus
Dana\GF17718-PA 690 GF17718-PA 168..602 147..610 190 22.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18417-PA 649 GG18417-PA 1..649 1..641 3120 90.5 Plus
Dere\GG14899-PA 661 GG14899-PA 7..659 18..637 1227 41.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12403-PA 700 GH12403-PA 46..700 27..641 2221 65.4 Plus
Dgri\GH14568-PA 655 GH14568-PA 3..652 18..636 1195 40.7 Plus
Dgri\GH22641-PA 646 GH22641-PA 172..548 194..601 160 22.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sk1-PA 641 CG1747-PA 1..641 1..641 3335 100 Plus
Sk1-PB 641 CG1747-PB 1..641 1..641 3335 100 Plus
Sk2-PA 661 CG32484-PA 7..658 18..636 1195 41.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15718-PA 678 GI15718-PA 37..678 31..641 2305 68.3 Plus
Dmoj\GI13895-PA 647 GI13895-PA 9..644 29..636 1180 40.5 Plus
Dmoj\GI10206-PA 693 GI10206-PA 129..597 116..601 179 22.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20779-PA 644 GL20779-PA 8..642 27..637 1208 40.4 Plus
Dper\GL14861-PA 318 GL14861-PA 29..318 377..641 961 66.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14519-PA 673 GA14519-PA 24..673 22..641 2580 76.2 Plus
Dpse\GA16938-PA 658 GA16938-PA 8..656 27..637 1220 40.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13080-PA 656 GM13080-PA 1..656 1..641 3201 93.3 Plus
Dsec\GM14525-PA 637 GM14525-PA 31..635 38..637 1177 40.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17022-PA 653 GD17022-PA 1..653 1..641 3223 94.2 Plus
Dsim\GD13722-PA 661 GD13722-PA 31..659 38..637 1214 41.8 Plus
Dsim\GD19624-PA 687 GD19624-PA 101..593 80..603 229 24.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15246-PA 687 GJ15246-PA 37..687 26..641 2320 67.5 Plus
Dvir\GJ11750-PA 648 GJ11750-PA 26..646 39..637 1200 41.6 Plus
Dvir\GJ10046-PA 692 GJ10046-PA 93..596 78..601 194 23.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16232-PA 694 GK16232-PA 26..694 17..641 2432 70.6 Plus
Dwil\GK12320-PA 695 GK12320-PA 39..693 23..637 1265 41.1 Plus
Dwil\GK14278-PA 669 GK14278-PA 179..571 189..603 170 21.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15936-PA 641 GE15936-PA 1..641 1..641 3063 91 Plus
Dyak\GE20353-PA 661 GE20353-PA 7..659 18..637 1221 41.6 Plus

RE64552.hyp Sequence

Translation from 234 to 2159

> RE64552.hyp
MTANTGTSGENLMGNGGKTHEPSTPTSDTEVASGTPTELSEIFFVDNSRR
KQSIKIQVKLCPEGVYLRRETEEDDHINEQLIRIDDIIGSRYGRRLKKRA
RGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRIL
RFRSSNDYGVNLQTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSG
SGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLTRYSG
IVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHH
CNEPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWG
LIADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPP
VEAARELPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQFADAIS
LDRSVYRQHADSWHSAMSRRTAYYSLGGPSMRSNRSRMSISQRIEAANAE
FAERVPTGTIPPLQMPLLSSDGWICEDGDFVMVHAAYTTHLSSDVFFAPE
SRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRA
FRIEPSSSDGILVVDGERVEYGPIQAEVMPGLINVMTTSGQ*

RE64552.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sk1-PA 641 CG1747-PA 1..641 1..641 3335 100 Plus
Sk1-PB 641 CG1747-PB 1..641 1..641 3335 100 Plus
Sk2-PA 661 CG32484-PA 7..658 18..636 1195 41.1 Plus