BDGP Sequence Production Resources |
Search the DGRC for RE64552
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 645 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Sk1-RA |
Protein status: | RE64552.pep: gold |
Preliminary Size: | 2020 |
Sequenced Size: | 2629 |
Gene | Date | Evidence |
---|---|---|
CG1747 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1747 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1747 | 2003-07-07 | Blastp of sequenced clone |
Sk1 | 2008-04-29 | Release 5.5 accounting |
Sk1 | 2008-08-15 | Release 5.9 accounting |
Sk1 | 2008-12-18 | 5.12 accounting |
2629 bp (2629 high quality bases) assembled on 2003-07-07
GenBank Submission: AY119652
> RE64552.complete AGTACGAATTGTCGTGTCAAGCGCACAGGAAGCGATCGCAACCCGGATCG GATTGGATCGGCCGGATCGAGCCACCATATGTACTATATACAAACACACA TATATATATAGATATATCGCAGTCTTTACGGTGAACAGCGTCGATCGCAT GTGGACAAACAATTAAATACAAGGTCAAAGAAGCGCTAAAAAGTGAAGTT AAGTCGAAACAAACACGAAGATACCAAAGAAGATATGACGGCCAACACAG GGACGTCGGGTGAAAATCTGATGGGAAATGGTGGAAAGACGCATGAACCC TCCACGCCCACTTCGGATACGGAAGTGGCCAGCGGCACGCCAACGGAACT GAGCGAAATCTTCTTCGTGGACAATAGCCGGCGCAAGCAGAGCATCAAAA TCCAGGTGAAACTATGCCCGGAAGGCGTTTACCTGCGACGCGAAACCGAG GAAGATGATCACATCAATGAGCAGCTGATCAGGATCGATGATATCATAGG ATCACGCTACGGACGGCGTTTGAAGAAACGAGCCCGAGGCGGTCTAAACT CCTGCCGCAATCCAAATGTTCCGGGCCAGGAGGCGGATTCGGAACCGGAT AGCGATAATAGCGCCTATTTGTACATCTATGCATATTTGAAGAAGGAGAA ACCGTTGCGACGTGTCCAAACGCTCCGGATTCTACGCTTTCGTTCGAGCA ATGACTACGGAGTGAATCTACAGACCGCCGAGATGTGGCATCATACGATT CGAAAGCACAAGCGTGGCAATGGCAGCAGTTCGCCCGCCGATTGTGGCAA ACAGTTGCTCATCCTACTGAATCCGAAATCCGGTTCGGGCAAAGGGCGTG AGCTCTTCCAGAAACAGGTGGCACCTTTGCTGACGGAAGCAGAGGTGCAA TACGATCTCCAGATCACCACACATCCGCAGTATGCCAAGGAGTTCGTGCG GACCAGAAGGGATCTGCTGACACGCTATTCGGGCATTGTGGTTGCCTCCG GCGATGGTCTATTCTACGAAGTGCTCAATGGGCTAATGGAACGCATGGAT TGGCGCCGAGCCTGCAGGGAGCTACCGCTTGGCATTATACCATGTGGTTC CGGGAATGGTCTGGCCAAAAGTGTGGCCCATCATTGCAATGAACCGTACG AACCGAAGCCCATTCTCCACGCCACCTTGACCTGCATGGCGGGCAAAAGT ACACCCATGGATGTGGTCAGAGTGGAGCTGGCGACGCGGGACAAGCACTT TGTGATGTACTCCTTCCTGTCGGTGGGCTGGGGTCTGATAGCCGACATCG ATATAGAGAGCGAGCGATTGAGATCGATTGGAGCGCAAAGGTTTACGCTG TGGGCCATCAAGCGATTGATCGGGCTGCGCAGCTACAAAGGCCGAGTGTC CTATCTACTGGGCAAGGGCAAGAAGGAACCACCAGTGGAAGCGGCTCGAG AGTTGCCTGCAGAATCAACGGCTGCAGGAATCCGCTCATCTCTGCCTCTG AATGCCGGGGAATTCCATGATCTACCCGAGGAGGAGGAGGGGGAGGCGGT CTTGGATGGAGAACAGTTCGCCGATGCCATATCTTTGGATCGTTCGGTTT ACCGCCAGCATGCCGACAGTTGGCACTCGGCCATGTCCAGGCGAACGGCA TATTACTCCCTGGGCGGACCCAGTATGCGATCCAATCGCAGCCGGATGAG CATTAGCCAGCGGATCGAGGCAGCAAATGCGGAATTCGCTGAGAGGGTGC CAACGGGCACCATTCCACCATTACAGATGCCACTGCTCAGCAGCGATGGT TGGATCTGCGAGGATGGTGACTTTGTGATGGTCCATGCCGCCTATACCAC CCATCTCTCCTCCGATGTCTTCTTTGCGCCCGAATCCCGTCTGGACGATG GCCTCATCTACCTGGTGATCATCCGGAGAGGCGTTAGTCGCCATCAGCTG CTCAATTTCATGCTGAACCTAAACGCAGGCACCCATCTGCCCATCGGCGA GGATCCGTTCATCAAGGTGGTGCCTTGTCGGGCATTCCGCATCGAGCCGA GCAGCTCCGATGGCATCCTGGTGGTGGACGGCGAGCGGGTGGAATATGGA CCCATTCAGGCGGAGGTTATGCCCGGCCTGATCAATGTGATGACCACCAG TGGGCAGTAGTGAAATATTAAATCCGTGTGCTTTGCAAAGCCTTAATCAT AACGAGATACATTCGAAGAATGTCAACATTCAATAGCTACTTTAGATCAA ACTTAGTTTATAAGAAGTTGCCTTTCCAATTAATAACCCTTACTAAATTC ATAACTTTTTTATATCTGCTAGGAACTTTTTCCAAAGTTTACGCATTTTG ACATTATTAGGTGGTAAAGTTCACAAAATTTCTATTATCTCTGTTTCTAT TGTTAGTGAAAACCCATTCTCATGGCTCTGAAACGCAATCTGTAATTTTT CCATCAGCCCATCAAAAAAAAAAAAGGAACTTCACACTATGCACTTAAGT AGTTGGTTATAAGTTGTTTTCTATTATTTTTTTTTTTTTTAATCGGTCGA TAGTGTTAATTATTTTAAGAACCATACGTAGACAAATAATAAACCAAAAT GCTATAAAAAATGTTAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sk1-RB | 2625 | Sk1-RB | 10..2623 | 1..2614 | 13070 | 100 | Plus |
Sk1.b | 2537 | Sk1.b | 88..2535 | 167..2614 | 12240 | 100 | Plus |
Sk1-RA | 2472 | Sk1-RA | 29..2472 | 169..2612 | 12220 | 100 | Plus |
Sk1.b | 2537 | Sk1.b | 10..89 | 1..80 | 400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11333713..11333880 | 1..168 | 100 | -> | Plus |
chrX | 11334744..11337190 | 169..2615 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RA | 1..1926 | 235..2160 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RA | 1..1926 | 235..2160 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RB | 1..1926 | 235..2160 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RA | 1..1926 | 235..2160 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RB | 1..1926 | 235..2160 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RB | 1..2614 | 1..2614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RB | 1..2614 | 1..2614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RB | 3..2616 | 1..2614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RB | 1..2614 | 1..2614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sk1-RB | 3..2616 | 1..2614 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11442541..11442708 | 1..168 | 100 | -> | Plus |
X | 11443567..11446012 | 169..2615 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11442541..11442708 | 1..168 | 100 | -> | Plus |
X | 11443567..11446012 | 169..2615 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11442541..11442708 | 1..168 | 100 | -> | Plus |
X | 11443567..11446012 | 169..2615 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11336574..11336741 | 1..168 | 100 | -> | Plus |
arm_X | 11337600..11340045 | 169..2615 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11451665..11454110 | 169..2615 | 99 | Plus | |
X | 11450639..11450806 | 1..168 | 100 | -> | Plus |
Translation from 234 to 2159
> RE64552.pep MTANTGTSGENLMGNGGKTHEPSTPTSDTEVASGTPTELSEIFFVDNSRR KQSIKIQVKLCPEGVYLRRETEEDDHINEQLIRIDDIIGSRYGRRLKKRA RGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRIL RFRSSNDYGVNLQTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSG SGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLTRYSG IVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHH CNEPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWG LIADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPP VEAARELPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQFADAIS LDRSVYRQHADSWHSAMSRRTAYYSLGGPSMRSNRSRMSISQRIEAANAE FAERVPTGTIPPLQMPLLSSDGWICEDGDFVMVHAAYTTHLSSDVFFAPE SRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRA FRIEPSSSDGILVVDGERVEYGPIQAEVMPGLINVMTTSGQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22547-PA | 644 | GF22547-PA | 41..644 | 33..641 | 2782 | 85.7 | Plus |
Dana\GF24262-PA | 659 | GF24262-PA | 10..657 | 29..637 | 1229 | 41.5 | Plus |
Dana\GF17718-PA | 690 | GF17718-PA | 168..602 | 147..610 | 190 | 22.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18417-PA | 649 | GG18417-PA | 1..649 | 1..641 | 3120 | 90.5 | Plus |
Dere\GG14899-PA | 661 | GG14899-PA | 7..659 | 18..637 | 1227 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12403-PA | 700 | GH12403-PA | 46..700 | 27..641 | 2221 | 65.4 | Plus |
Dgri\GH14568-PA | 655 | GH14568-PA | 3..652 | 18..636 | 1195 | 40.7 | Plus |
Dgri\GH22641-PA | 646 | GH22641-PA | 172..548 | 194..601 | 160 | 22.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sk1-PA | 641 | CG1747-PA | 1..641 | 1..641 | 3335 | 100 | Plus |
Sk1-PB | 641 | CG1747-PB | 1..641 | 1..641 | 3335 | 100 | Plus |
Sk2-PA | 661 | CG32484-PA | 7..658 | 18..636 | 1195 | 41.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15718-PA | 678 | GI15718-PA | 37..678 | 31..641 | 2305 | 68.3 | Plus |
Dmoj\GI13895-PA | 647 | GI13895-PA | 9..644 | 29..636 | 1180 | 40.5 | Plus |
Dmoj\GI10206-PA | 693 | GI10206-PA | 129..597 | 116..601 | 179 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20779-PA | 644 | GL20779-PA | 8..642 | 27..637 | 1208 | 40.4 | Plus |
Dper\GL14861-PA | 318 | GL14861-PA | 29..318 | 377..641 | 961 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14519-PA | 673 | GA14519-PA | 24..673 | 22..641 | 2580 | 76.2 | Plus |
Dpse\GA16938-PA | 658 | GA16938-PA | 8..656 | 27..637 | 1220 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13080-PA | 656 | GM13080-PA | 1..656 | 1..641 | 3201 | 93.3 | Plus |
Dsec\GM14525-PA | 637 | GM14525-PA | 31..635 | 38..637 | 1177 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17022-PA | 653 | GD17022-PA | 1..653 | 1..641 | 3223 | 94.2 | Plus |
Dsim\GD13722-PA | 661 | GD13722-PA | 31..659 | 38..637 | 1214 | 41.8 | Plus |
Dsim\GD19624-PA | 687 | GD19624-PA | 101..593 | 80..603 | 229 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15246-PA | 687 | GJ15246-PA | 37..687 | 26..641 | 2320 | 67.5 | Plus |
Dvir\GJ11750-PA | 648 | GJ11750-PA | 26..646 | 39..637 | 1200 | 41.6 | Plus |
Dvir\GJ10046-PA | 692 | GJ10046-PA | 93..596 | 78..601 | 194 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16232-PA | 694 | GK16232-PA | 26..694 | 17..641 | 2432 | 70.6 | Plus |
Dwil\GK12320-PA | 695 | GK12320-PA | 39..693 | 23..637 | 1265 | 41.1 | Plus |
Dwil\GK14278-PA | 669 | GK14278-PA | 179..571 | 189..603 | 170 | 21.5 | Plus |
Translation from 234 to 2159
> RE64552.hyp MTANTGTSGENLMGNGGKTHEPSTPTSDTEVASGTPTELSEIFFVDNSRR KQSIKIQVKLCPEGVYLRRETEEDDHINEQLIRIDDIIGSRYGRRLKKRA RGGLNSCRNPNVPGQEADSEPDSDNSAYLYIYAYLKKEKPLRRVQTLRIL RFRSSNDYGVNLQTAEMWHHTIRKHKRGNGSSSPADCGKQLLILLNPKSG SGKGRELFQKQVAPLLTEAEVQYDLQITTHPQYAKEFVRTRRDLLTRYSG IVVASGDGLFYEVLNGLMERMDWRRACRELPLGIIPCGSGNGLAKSVAHH CNEPYEPKPILHATLTCMAGKSTPMDVVRVELATRDKHFVMYSFLSVGWG LIADIDIESERLRSIGAQRFTLWAIKRLIGLRSYKGRVSYLLGKGKKEPP VEAARELPAESTAAGIRSSLPLNAGEFHDLPEEEEGEAVLDGEQFADAIS LDRSVYRQHADSWHSAMSRRTAYYSLGGPSMRSNRSRMSISQRIEAANAE FAERVPTGTIPPLQMPLLSSDGWICEDGDFVMVHAAYTTHLSSDVFFAPE SRLDDGLIYLVIIRRGVSRHQLLNFMLNLNAGTHLPIGEDPFIKVVPCRA FRIEPSSSDGILVVDGERVEYGPIQAEVMPGLINVMTTSGQ*