Clone RE64695 Report

Search the DGRC for RE64695

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:646
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG8005-RA
Protein status:RE64695.pep: gold
Preliminary Size:1236
Sequenced Size:1242

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8005 2002-01-01 Sim4 clustering to Release 2
CG8005 2003-01-01 Sim4 clustering to Release 3
CG8005 2003-08-11 Blastp of sequenced clone
CG8005 2008-04-29 Release 5.5 accounting
CG8005 2008-08-15 Release 5.9 accounting
CG8005 2008-12-18 5.12 accounting

Clone Sequence Records

RE64695.complete Sequence

1242 bp (1242 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010229

> RE64695.complete
GCGTTAACCAGCACATGTTGATTAATGCATTACGATTGGGCTCCCCTTGA
GCTGTTTATTTTGAATTTCAACAATTTCTGATTATGTCGACGGAGCCATC
GGTGGCCAAGGATGCTGTGCTGAAGCGCAGCGAGGCTCTGGCGGAAAACA
CGCCCCAAGTTAGTGGCTACGATTTCAACGAAGGCTTAGACTACAGTAAG
CTCTTCGAATCCTATGTGAACACCGGGTTTCAGGCCACGAATCTTGGCCT
GGCCATTCGGGAAATTAACAGAATGCTGGATTGCAGGGACCAGCCATTGG
AAGCGGACCAAATAGACAGCCATGAAACAGACGACTTCATCCGTCGAAGA
AGCAAGTGCACCGTATTTTTGGGCTACACATCCAACTTGGTTTCGTCCGG
ACTGCGAGAGACCATTCGCTTTCTGGCCGAGCACCGTATGATCGACTGCA
TTGTGACCACAGCTGGCGGCGTCGAGGAGGACTTCATCAAGTGCTTGGCT
CCCACGTTCATGGGTTCATTTGAGCTGAGTGGCAGGGATCTCCGCGAGCG
TGGAATCAACAGAATTGGCAACCTTCTGGTGCCGAACGATAATTACTGTA
AGTTCGAGGACTGGGTGATGCCGCTGCTGGACGAGATGCTGGAGGAGCAA
AAATCCCAGGGAACTATCTGGTCGCCGTCGAAGATTATTCATCGGTTGGG
CGAACGGATTGGCGATCCTAGTTCCATTTACTATTGGGCTGCCAAGAATC
AAATACCAGTCTTTTGTCCCGCCTTGACGGATGGCAGTCTGGGCGACATG
ATGTACTTTCACTCCTTTCGACAACCTGGACTCGTGGTGGACATTCTGTC
CGATCTGCGGAGGCTCAACACCATGGCTGTCAAGGCGGTCAACAGCGGGA
TGATCATCGTGGGCGGCGGCGTTATCAAGCATCACATTTGTAATGCCAAT
CTGATGCGCAATGGAGCGGATTACTCAGTGTTCATTAATACTGCCTCGGA
GTTTGACGGCAGCGATAGCGGCGCTCGACCGGATGAGGCTATATCGTGGG
GCAAGATCAGGAAGGATGCCACCCCTGTTAAGGTGTATGCCGAGGCTAGC
TTGGTCTTTCCGTTGATTGTGGGTGAAACATTCGCCAAGCGGCATCACTG
CGCCGGCAAAGAGCTGCCCCGAGAGACTAACCAAGTGTAAATATATACGA
GAAAATAAGGACAACGCAATCAACGTAAAAAAAAAAAAAAAA

RE64695.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005.a 2136 CG8005.a 37..1262 4..1229 6115 99.9 Plus
CG8005-RA 1601 CG8005-RA 37..1262 4..1229 6115 99.9 Plus
CG8005.b 2552 CG8005.b 37..1262 4..1229 6115 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8190501..8191451 275..1225 4755 100 Plus
chr3L 24539361 chr3L 8190172..8190443 4..275 1360 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8198541..8199495 275..1229 4760 99.9 Plus
3L 28110227 3L 8198212..8198483 4..275 1360 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8191641..8192595 275..1229 4760 99.8 Plus
3L 28103327 3L 8191312..8191583 4..275 1360 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:00:23 has no hits.

RE64695.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:01:39 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8190169..8190443 1..275 99 -> Plus
chr3L 8190502..8191451 276..1226 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:50 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1107 84..1190 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:51:28 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1107 84..1190 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:03:19 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1107 84..1190 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:17:38 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1107 84..1190 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:35:24 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1107 84..1190 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:15:06 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1225 1..1225 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:51:28 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1225 1..1225 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:19 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 3..1227 1..1225 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:17:39 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 1..1225 1..1225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:24 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
CG8005-RA 3..1227 1..1225 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:39 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8198209..8198483 1..275 99 -> Plus
3L 8198542..8199491 276..1226 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:39 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8198209..8198483 1..275 99 -> Plus
3L 8198542..8199491 276..1226 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:39 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8198209..8198483 1..275 99 -> Plus
3L 8198542..8199491 276..1226 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:19 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8191309..8191583 1..275 99 -> Plus
arm_3L 8191642..8192591 276..1226 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:51:44 Download gff for RE64695.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8191309..8191583 1..275 99 -> Plus
3L 8191642..8192591 276..1226 99   Plus

RE64695.pep Sequence

Translation from 83 to 1189

> RE64695.pep
MSTEPSVAKDAVLKRSEALAENTPQVSGYDFNEGLDYSKLFESYVNTGFQ
ATNLGLAIREINRMLDCRDQPLEADQIDSHETDDFIRRRSKCTVFLGYTS
NLVSSGLRETIRFLAEHRMIDCIVTTAGGVEEDFIKCLAPTFMGSFELSG
RDLRERGINRIGNLLVPNDNYCKFEDWVMPLLDEMLEEQKSQGTIWSPSK
IIHRLGERIGDPSSIYYWAAKNQIPVFCPALTDGSLGDMMYFHSFRQPGL
VVDILSDLRRLNTMAVKAVNSGMIIVGGGVIKHHICNANLMRNGADYSVF
INTASEFDGSDSGARPDEAISWGKIRKDATPVKVYAEASLVFPLIVGETF
AKRHHCAGKELPRETNQV*

RE64695.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25102-PA 367 GF25102-PA 1..367 1..368 1840 91.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14286-PA 368 GG14286-PA 1..368 1..368 1953 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15495-PA 362 GH15495-PA 1..354 1..354 1736 89 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-PA 368 CG8005-PA 1..368 1..368 1926 100 Plus
CG8005-PB 76 CG8005-PB 1..64 1..64 321 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16771-PA 361 GI16771-PA 1..354 1..354 1678 88.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22536-PA 365 GL22536-PA 1..354 1..354 1717 87.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24615-PA 365 GA24615-PA 1..354 1..354 1722 88.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25027-PA 368 GM25027-PA 1..368 1..368 1962 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14061-PA 368 GD14061-PA 1..368 1..368 1975 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12516-PA 362 GJ12516-PA 1..354 1..354 1737 87.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17181-PA 364 GK17181-PA 13..361 6..354 1750 90.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20716-PA 368 GE20716-PA 1..368 1..368 1936 97.6 Plus

RE64695.hyp Sequence

Translation from 83 to 1189

> RE64695.hyp
MSTEPSVAKDAVLKRSEALAENTPQVSGYDFNEGLDYSKLFESYVNTGFQ
ATNLGLAIREINRMLDCRDQPLEADQIDSHETDDFIRRRSKCTVFLGYTS
NLVSSGLRETIRFLAEHRMIDCIVTTAGGVEEDFIKCLAPTFMGSFELSG
RDLRERGINRIGNLLVPNDNYCKFEDWVMPLLDEMLEEQKSQGTIWSPSK
IIHRLGERIGDPSSIYYWAAKNQIPVFCPALTDGSLGDMMYFHSFRQPGL
VVDILSDLRRLNTMAVKAVNSGMIIVGGGVIKHHICNANLMRNGADYSVF
INTASEFDGSDSGARPDEAISWGKIRKDATPVKVYAEASLVFPLIVGETF
AKRHHCAGKELPRETNQV*

RE64695.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8005-PA 368 CG8005-PA 1..368 1..368 1926 100 Plus
CG8005-PB 76 CG8005-PB 1..64 1..64 321 100 Plus