Clone RE64763 Report

Search the DGRC for RE64763

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:647
Well:63
Vector:pFlc-1
Associated Gene/TranscriptSt3-RB
Protein status:RE64763.pep: gold
Sequenced Size:1113

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5431 2003-01-01 Sim4 clustering to Release 3
CG5431 2004-03-31 Blastp of sequenced clone
CG5431 2008-04-29 Release 5.5 accounting
CG5431 2008-08-15 Release 5.9 accounting
CG5431 2008-12-18 5.12 accounting

Clone Sequence Records

RE64763.complete Sequence

1113 bp (1113 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012452

> RE64763.complete
TGAGTACGCTGTCGCTATGAATCGGGTTCAGGTCACGCCGCGGAGCTATC
CCACGAACCTTATCGATAAGGACTGGGGAAATCGAAAGCTTTTTTATACG
AAAGATTCGGAGAACTTTCTTCGCTTAGTCCACGATATGAAGCTCAGGGA
TGACGATGTCTGGATCGTAACTCTACCGAAATGCGGAACCACTTGGATGC
AGGAACTGCTCTGGTTGCTCCTCAACAACTGCGATTTCGAGGGGGCGTTG
GCCAAGGATCAGGAGCTGCGAACTCCGTTTCTCGAGTTCGGTTACTCCGT
TTTTCACGACCCGAACCGCTCATTCGGGCCTATCGAGGACCTGAAGTCCC
CGCGACTGATAAAATCCCACCTTTCGCTTGCCCTCCTCCCATCAAAACTT
TGGGAGGGAAAAAACAAAGTGATCTATGTGTCCCGTAACCCCCTGGACTC
CTATGTCTCCCGATATTATCACGGAGTATCTTTTGGTTTCAATTACGGGA
AGTCACTGCACCAGTACTTCGATGAGGTGCTGGCCTCTGATGATTTCCCC
ACGGAGTTCATTGAACACGCCCACGAGTTCTACCAACTGAGGAACGAGCC
TTGGGTATTCTACACCAGCTTTGAAATGATGAAGAAAGATCTGCGAGGAG
TGATCAACGATGTCTCCAGATTTCTGAATAAACCCATCAACGATCAGCAA
ATGGAGAAACTGCTAAAGCATTTGTCCTTCGCGGAAATGAAGAAAAATCC
CACCACGAATCATCTGTGGGAGTTGGCCCAAGTTCAACACGAAAATGCTG
GGAAAGAAATGCACCCATTCGTGAGACGTGGGGATGTCAATGGCTACAAG
GACGAATTGAAGCCCGAACAAATTGAGAAGGCCAATGTCCGGATACAAGA
GGTTCTTGCGAAGAACGGTGTGACTTTGGACGAACTACTGCTCCTGAAAG
ATCAGTAAGATACATATTGAGAATAATCAAGATAATGTTGTATCTTTTGG
TTTAGCTCGGAAGTAAATAACAGCGAGAGAGGAGAGCAAATAAAGCAAGG
TCAAGCTGTTTGACCTACCAAACACCTTGTTCTTCAAATGTTTATCTAAA
AAAAAAAAAAAAA

RE64763.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5431-RB 1194 CG5431-RB 24..1121 3..1100 5490 100 Plus
CG5431.b 1274 CG5431.b 180..1274 3..1097 5475 100 Plus
CG5431.a 1297 CG5431.a 180..1131 3..954 4760 100 Plus
CG5431.a 1297 CG5431.a 1132..1226 1006..1100 475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19569910..19570367 286..743 2290 100 Plus
chr2R 21145070 chr2R 19569564..19569848 3..287 1410 99.6 Plus
chr2R 21145070 chr2R 19570555..19570835 817..1097 1315 97.9 Plus
chr2R 21145070 chr2R 19570429..19570501 744..816 365 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23683729..23684186 286..743 2290 100 Plus
2R 25286936 2R 23683383..23683667 3..287 1425 100 Plus
2R 25286936 2R 23684374..23684657 817..1100 1420 100 Plus
2R 25286936 2R 23684248..23684320 744..816 365 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23684928..23685385 286..743 2290 100 Plus
2R 25260384 2R 23684582..23684866 3..287 1425 100 Plus
2R 25260384 2R 23685573..23685856 817..1100 1420 100 Plus
2R 25260384 2R 23685447..23685519 744..816 365 100 Plus
2R 25260384 2R 23683099..23683160 147..208 160 83.8 Plus
Blast to na_te.dros performed on 2019-03-15 20:27:46 has no hits.

RE64763.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:28:51 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19569562..19569846 1..285 99 -> Plus
chr2R 19569910..19570367 286..743 100 -> Plus
chr2R 19570429..19570501 744..816 100 -> Plus
chr2R 19570555..19570835 817..1097 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:30:52 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
CG5431-RB 1..942 17..958 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:45 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
CG5431-RB 1..942 17..958 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:13:17 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RB 1..942 17..958 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:33 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
CG5431-RB 1..942 17..958 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:54 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RB 1..942 17..958 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:32 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
CG5431-RB 1..1097 1..1097 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:45 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
CG5431-RB 1..1097 1..1097 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:17 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RB 5..1101 1..1097 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:34 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
CG5431-RB 1..1097 1..1097 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:54 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RB 5..1101 1..1097 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:28:51 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23683381..23683665 1..285 99 -> Plus
2R 23683729..23684186 286..743 100 -> Plus
2R 23684248..23684320 744..816 100 -> Plus
2R 23684374..23684654 817..1097 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:28:51 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23683381..23683665 1..285 99 -> Plus
2R 23683729..23684186 286..743 100 -> Plus
2R 23684248..23684320 744..816 100 -> Plus
2R 23684374..23684654 817..1097 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:28:51 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23683381..23683665 1..285 99 -> Plus
2R 23683729..23684186 286..743 100 -> Plus
2R 23684248..23684320 744..816 100 -> Plus
2R 23684374..23684654 817..1097 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:17 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19571771..19571843 744..816 100 -> Plus
arm_2R 19570904..19571188 1..285 99 -> Plus
arm_2R 19571252..19571709 286..743 100 -> Plus
arm_2R 19571897..19572177 817..1097 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:58 Download gff for RE64763.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23684598..23684882 1..285 99 -> Plus
2R 23684946..23685403 286..743 100 -> Plus
2R 23685465..23685537 744..816 100 -> Plus
2R 23685591..23685871 817..1097 100   Plus

RE64763.hyp Sequence

Translation from 0 to 957

> RE64763.hyp
QYAVAMNRVQVTPRSYPTNLIDKDWGNRKLFYTKDSENFLRLVHDMKLRD
DDVWIVTLPKCGTTWMQELLWLLLNNCDFEGALAKDQELRTPFLEFGYSV
FHDPNRSFGPIEDLKSPRLIKSHLSLALLPSKLWEGKNKVIYVSRNPLDS
YVSRYYHGVSFGFNYGKSLHQYFDEVLASDDFPTEFIEHAHEFYQLRNEP
WVFYTSFEMMKKDLRGVINDVSRFLNKPINDQQMEKLLKHLSFAEMKKNP
TTNHLWELAQVQHENAGKEMHPFVRRGDVNGYKDELKPEQIEKANVRIQE
VLAKNGVTLDELLLLKDQ*

RE64763.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
St3-PB 313 CG44167-PB 1..313 6..318 1680 100 Plus
St3-PC 526 CG44167-PC 1..313 6..318 1680 100 Plus
St3-PA 331 CG44167-PA 1..312 6..317 1675 100 Plus
St1-PB 338 CG5428-PB 32..310 15..293 543 41.9 Plus
St4-PB 346 CG6704-PB 38..338 26..300 302 31.2 Plus

RE64763.pep Sequence

Translation from 1 to 957

> RE64763.pep
EYAVAMNRVQVTPRSYPTNLIDKDWGNRKLFYTKDSENFLRLVHDMKLRD
DDVWIVTLPKCGTTWMQELLWLLLNNCDFEGALAKDQELRTPFLEFGYSV
FHDPNRSFGPIEDLKSPRLIKSHLSLALLPSKLWEGKNKVIYVSRNPLDS
YVSRYYHGVSFGFNYGKSLHQYFDEVLASDDFPTEFIEHAHEFYQLRNEP
WVFYTSFEMMKKDLRGVINDVSRFLNKPINDQQMEKLLKHLSFAEMKKNP
TTNHLWELAQVQHENAGKEMHPFVRRGDVNGYKDELKPEQIEKANVRIQE
VLAKNGVTLDELLLLKDQ*

RE64763.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13072-PA 272 GF13072-PA 1..272 46..317 1021 72.8 Plus
Dana\GF13071-PA 338 GF13071-PA 20..310 3..293 557 41.2 Plus
Dana\GF24091-PA 733 GF24091-PA 1..189 66..253 345 42.1 Plus
Dana\GF16584-PA 316 GF16584-PA 47..314 43..310 310 29.5 Plus
Dana\GF11151-PA 346 GF11151-PA 56..311 44..277 284 34.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22875-PA 314 GG22875-PA 1..311 6..315 1443 86.2 Plus
Dere\GG22874-PA 338 GG22874-PA 20..310 3..293 550 39.9 Plus
Dere\GG22455-PA 346 GG22455-PA 56..320 44..290 301 33.6 Plus
Dere\GG15423-PA 316 GG15423-PA 47..314 43..310 294 28.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20667-PA 313 GH20667-PA 1..310 6..315 1032 63.2 Plus
Dgri\GH20666-PA 338 GH20666-PA 20..310 3..293 576 41.6 Plus
Dgri\GH23313-PA 310 GH23313-PA 17..302 21..308 441 37 Plus
Dgri\GH17085-PA 312 GH17085-PA 37..303 43..307 426 36.2 Plus
Dgri\GH22840-PA 346 GH22840-PA 52..323 44..294 319 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
St3-PC 526 CG44167-PC 1..313 6..318 1680 100 Plus
St3-PB 313 CG44167-PB 1..313 6..318 1680 100 Plus
St3-PA 331 CG44167-PA 1..312 6..317 1675 100 Plus
St1-PB 338 CG5428-PB 32..310 15..293 543 41.9 Plus
St4-PB 346 CG6704-PB 38..338 26..300 302 31.2 Plus
St4-PA 346 CG6704-PA 38..338 26..300 302 31.2 Plus
St2-PB 316 CG16733-PB 47..314 43..310 293 28.1 Plus
St2-PA 316 CG16733-PA 47..314 43..310 293 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19029-PA 345 GI19029-PA 34..310 17..293 578 43.6 Plus
Dmoj\GI22042-PA 316 GI22042-PA 47..314 43..310 314 30.2 Plus
Dmoj\GI21219-PA 349 GI21219-PA 56..311 44..277 305 34.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16877-PA 312 GL16877-PA 1..311 6..317 1096 65.7 Plus
Dper\GL16876-PA 334 GL16876-PA 34..310 17..293 569 43.6 Plus
Dper\GL13941-PA 290 GL13941-PA 47..265 43..253 291 30.8 Plus
Dper\GL20087-PA 350 GL20087-PA 56..319 44..285 272 31.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18876-PA 313 GA18876-PA 1..311 6..317 1090 65.4 Plus
Dpse\GA24321-PA 334 GA24321-PA 34..310 17..293 568 43.6 Plus
Dpse\GA14114-PA 316 GA14114-PA 47..314 43..310 309 28.1 Plus
Dpse\GA19797-PA 350 GA19797-PA 38..318 26..284 272 30.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16035-PA 313 GM16035-PA 1..312 6..317 1562 93.6 Plus
Dsec\GM16034-PA 338 GM16034-PA 20..310 3..293 553 40.5 Plus
Dsec\GM20241-PA 346 GM20241-PA 21..320 18..290 304 32.4 Plus
Dsec\GM23787-PA 316 GM23787-PA 47..314 43..310 289 28.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11783-PA 309 GD11783-PA 1..304 6..309 1529 93.4 Plus
Dsim\GD11782-PA 338 GD11782-PA 20..310 3..293 551 40.2 Plus
Dsim\GD25727-PA 346 GD25727-PA 21..320 18..290 303 32.4 Plus
Dsim\GD18598-PA 316 GD18598-PA 47..314 43..310 293 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19997-PA 314 GJ19997-PA 1..303 6..308 950 59.4 Plus
Dvir\GJ19995-PA 345 GJ19995-PA 34..310 17..293 567 42.9 Plus
Dvir\GJ11360-PA 306 GJ11360-PA 14..283 21..293 486 40 Plus
Dvir\GJ11359-PA 400 GJ11359-PA 47..377 21..293 322 29.3 Plus
Dvir\GJ20821-PA 349 GJ20821-PA 54..348 42..307 309 32.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23068-PA 314 GK23068-PA 1..314 6..318 1005 61.8 Plus
Dwil\GK23067-PA 338 GK23067-PA 20..308 3..291 540 40.8 Plus
Dwil\GK19529-PA 344 GK19529-PA 47..344 32..312 324 32.4 Plus
Dwil\GK22430-PA 319 GK22430-PA 47..317 43..310 285 26.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14313-PA 317 GE14313-PA 1..310 6..315 1461 87.7 Plus
Dyak\GE14312-PA 338 GE14312-PA 20..310 3..293 550 40.2 Plus
Dyak\GE13326-PA 346 GE13326-PA 21..320 18..290 296 31.7 Plus
Dyak\GE25933-PA 316 GE25933-PA 47..314 43..310 288 28.1 Plus