Clone RE65017 Report

Search the DGRC for RE65017

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:650
Well:17
Vector:pFlc-1
Associated Gene/TranscriptMob2-RB
Protein status:RE65017.pep: gold
Sequenced Size:1881

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Mob2-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

RE65017.complete Sequence

1881 bp assembled on 2010-06-04

GenBank Submission: BT124999.1

> RE65017.complete
AGGCTTCTGATTCCGCTGCCGAACGGCGGGCGCACGCACGCAGTTAAAAA
AATAAATAAATAAAAAGAGAAGGCAAGATGACCAAAGCAACGTAAATAAT
ACCAAAAAATGAAAGAAACTCTAAGCTCAAAGGTGCCAACAAGAATAGGA
GTAACGTTTGTGTCTGAATCGGATCCAAAGAAAAAGTTCAAAAGTTCGCC
ATCAACGTCGAGCTCAACAATATCAACGGCGACAATAACAAGCACAACAA
CAACAACAACAACAACCGCATCGCCCCCACCGCCCCAAACTTCGTATGTG
ATTAAATGTCTATTGAAGACCGCTCGTTTTATGTGGCAAGTGACGACAAT
ACCCTCTAAAATCGGTGATACCATTGGTACCCTGTACCGTTATGCTCAGG
ATTCAGTTGATAGTTTTCTATGCGTAGCTGGCAAGGCCCGTCGCAAGGAA
CGCGATGGCGATCAAAATTCAACAGACACCAAATTGTATTTGGAGGAAAG
TGTCCTAGAACGTAAATTACCTGAAGCTGATCTCAAAGCCCTAGTGGATC
TTCCAGCTGGTTTGGACTACAATGAATGGCTAGCGTCACACACCCTCGCT
CTATTTGAGCACGTGAATTTGGTCTATGGAACTATTAGTGAATTTTGTAC
ACAATCCGGTTGCGCTGACATGACCGGACCCGGCAACAGAACGTACTTAT
GGTTCGACGAGAAGGGCAAGAAGACGCGCGTCGCAGCACCACAGTACATC
GACTATGTGATGACGTTCACCCAGAAGACGGTCAGCGATGAGTCGATATT
CCCAACCAAATACGCCAACGAGTTCCCCGGCTCGTTCGAGTCGATTGCGC
GGAAGATACTACGCTTGCAATTTCATGTGATAGCGCATCTGTATGCGGCG
CATTTCAGAGAAATCGCGCTGCTCGGCTTGCACACCCATCTAAATCTGAC
TTTCGCGCACCTCACCGCACTGCACCGGCGCTTCAATTTGATCGACGAGA
AGGAGACGGACGTGCTGCGCGACCTTGAGGTGGCCCTGCGCCTCACCGAC
GATACCGGTGGATGCCAGGATGCTACCTCCACGACGTCGTCGGTCCATGA
CCACTCCCACTCCGGCGATCTCCAGCATCAGTCGCTGCAACAGCAGCAGC
AACACCACAACAGCAGCAGCAACAGCACCTCCTCGGCGGAGGCGTTTCAC
GTCAATTCACAAAGCAACAATGGCAGCACATCCGCCTCGGCATCGGTATC
CCTAATCGATGGCGATGCGGTGGCGCCGCCCATTTGCACGCAACCAGAGG
CGGGTGCGGGCTGCAAGCCAGCGGGCAGCAGCGGATTGCTGGGCGGTATA
CTGGGCGACCTGACCAGCGGCGAATTTGGTGATACAACGCGCTACTGCAC
ATCGGCAGTTCCTCAGGCGGCGGCAGCAGCGGGTGCGGGTGTGGGTGGTA
CAGCGATCGGTGCCACGGATGCTGCCGCATTGAACAACGGCGCTGGCGCA
CTACATTTAAACTTTAGCAACAATAATAACAATAATCATAATCTGAATCA
CCATCACCACCATCATCACCACCACGGCCACCATGGCCATCATCATGCGG
CACAGCAGCAGCAGCAGCACAGTGGACTCATACAGTGCAATGCGGCGGGC
GGCGGAGGGAATGCAACAGGGGTAGCCACGGGCGGAGCAACTGCAGCAGC
GTCCTCGACCACCACGGCATAGTGGGGCAAAAGCTAAGAAGAGAGCAGCA
GCAGCAGCAGCAGCAACAGCAACAACAAAAAACATTAGAAATACTAGATT
TACGCAAAAATGTTATTTAATGTTACTTCTATGATCCTAAAGTTGAAAAT
ATTGTAAAAATAACAAAAAAAAAAAAAAAAA

RE65017.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mob2.a 3639 Mob2.a 262..2073 69..1880 9015 99.8 Plus
Mob2-RB 3482 Mob2-RB 106..1916 70..1880 9010 99.8 Plus
Mob2-RC 3633 Mob2-RC 617..2067 430..1880 7210 99.7 Plus
Mob2.a 3639 Mob2.a 111..176 4..69 330 100 Plus
Mob2-RB 3482 Mob2-RB 3..68 4..69 330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11515212..11516388 1863..687 5870 99.9 Minus
chr3L 24539361 chr3L 11518342..11518705 431..68 1805 99.7 Minus
chr3L 24539361 chr3L 11518069..11518230 592..431 810 100 Minus
chr3L 24539361 chr3L 11516452..11516548 689..593 485 100 Minus
chr3L 24539361 chr3L 11525324..11525389 69..4 330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11524323..11525516 1880..687 5925 99.7 Minus
3L 28110227 3L 11527455..11527818 431..68 1820 100 Minus
3L 28110227 3L 11527182..11527343 592..431 810 100 Minus
3L 28110227 3L 11525580..11525676 689..593 485 100 Minus
3L 28110227 3L 11534427..11534492 69..4 330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11517423..11518616 1880..687 5925 99.7 Minus
3L 28103327 3L 11520555..11520918 431..68 1820 100 Minus
3L 28103327 3L 11520282..11520443 592..431 810 100 Minus
3L 28103327 3L 11518680..11518776 689..593 485 100 Minus
3L 28103327 3L 11527527..11527592 69..4 330 100 Minus
Blast to na_te.dros performed 2019-03-16 11:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 21..48 1515..1542 113 89.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7059..7086 1515..1542 113 89.3 Plus

RE65017.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:06:46 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11515953..11516385 690..1122 100 <- Minus
chr3L 11516452..11516548 593..689 100 <- Minus
chr3L 11518069..11518229 432..592 100 <- Minus
chr3L 11518342..11518506 267..431 99 == Minus
chr3L 11518559..11518705 68..214 100 == Minus
chr3L 11525350..11525392 1..43 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:26:41 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RB 1..1614 109..1722 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 22:01:02 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RB 1..1614 109..1722 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:27:20 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RB 1..1614 109..1722 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:23 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RB 1..1614 109..1722 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:26:40 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RB 1..44 26..69 100 -> Plus
Mob2-RB 82..1875 70..1864 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 22:01:02 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RB 1..44 26..69 100 -> Plus
Mob2-RB 82..1875 70..1864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:27:20 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RE 1..51 18..68 100 -- Plus
Mob2-RE 138..1932 69..1864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:23 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
Mob2-RE 138..1932 69..1864 99   Plus
Mob2-RE 1..51 18..68 100 -- Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:46 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11524339..11525513 690..1864 99 <- Minus
3L 11525580..11525676 593..689 100 <- Minus
3L 11527182..11527342 432..592 100 <- Minus
3L 11527455..11527816 70..431 100 <- Minus
3L 11534427..11534495 1..69 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:46 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11524339..11525513 690..1864 99 <- Minus
3L 11525580..11525676 593..689 100 <- Minus
3L 11527182..11527342 432..592 100 <- Minus
3L 11527455..11527816 70..431 100 <- Minus
3L 11534427..11534495 1..69 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:46 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11524339..11525513 690..1864 99 <- Minus
3L 11525580..11525676 593..689 100 <- Minus
3L 11527182..11527342 432..592 100 <- Minus
3L 11527455..11527816 70..431 100 <- Minus
3L 11534427..11534495 1..69 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:27:20 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11517439..11518613 690..1864 99 <- Minus
arm_3L 11518680..11518776 593..689 100 <- Minus
arm_3L 11520282..11520442 432..592 100 <- Minus
arm_3L 11520555..11520916 70..431 100 <- Minus
arm_3L 11527527..11527595 1..69 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:38:47 Download gff for RE65017.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11517439..11518613 690..1864 99 <- Minus
3L 11518680..11518776 593..689 100 <- Minus
3L 11520282..11520442 432..592 100 <- Minus
3L 11520555..11520916 70..431 100 <- Minus
3L 11527527..11527595 1..69 98   Minus

RE65017.hyp Sequence

Translation from 108 to 1721

> RE65017.hyp
MKETLSSKVPTRIGVTFVSESDPKKKFKSSPSTSSSTISTATITSTTTTT
TTTASPPPPQTSYVIKCLLKTARFMWQVTTIPSKIGDTIGTLYRYAQDSV
DSFLCVAGKARRKERDGDQNSTDTKLYLEESVLERKLPEADLKALVDLPA
GLDYNEWLASHTLALFEHVNLVYGTISEFCTQSGCADMTGPGNRTYLWFD
EKGKKTRVAAPQYIDYVMTFTQKTVSDESIFPTKYANEFPGSFESIARKI
LRLQFHVIAHLYAAHFREIALLGLHTHLNLTFAHLTALHRRFNLIDEKET
DVLRDLEVALRLTDDTGGCQDATSTTSSVHDHSHSGDLQHQSLQQQQQHH
NSSSNSTSSAEAFHVNSQSNNGSTSASASVSLIDGDAVAPPICTQPEAGA
GCKPAGSSGLLGGILGDLTSGEFGDTTRYCTSAVPQAAAAAGAGVGGTAI
GATDAAALNNGAGALHLNFSNNNNNNHNLNHHHHHHHHHGHHGHHHAAQQ
QQQHSGLIQCNAAGGGGNATGVATGGATAAASSTTTA*

RE65017.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Mob2-PE 537 CG11711-PE 1..537 1..537 2814 100 Plus
Mob2-PB 537 CG11711-PB 1..537 1..537 2814 100 Plus
Mob2-PD 566 CG11711-PD 127..566 98..537 2276 98 Plus
Mob2-PC 431 CG11711-PC 2..431 108..537 2273 100 Plus
Mob2-PA 728 CG11711-PA 297..728 106..537 2268 99.3 Plus

RE65017.pep Sequence

Translation from 108 to 1721

> RE65017.pep
MKETLSSKVPTRIGVTFVSESDPKKKFKSSPSTSSSTISTATITSTTTTT
TTTASPPPPQTSYVIKCLLKTARFMWQVTTIPSKIGDTIGTLYRYAQDSV
DSFLCVAGKARRKERDGDQNSTDTKLYLEESVLERKLPEADLKALVDLPA
GLDYNEWLASHTLALFEHVNLVYGTISEFCTQSGCADMTGPGNRTYLWFD
EKGKKTRVAAPQYIDYVMTFTQKTVSDESIFPTKYANEFPGSFESIARKI
LRLQFHVIAHLYAAHFREIALLGLHTHLNLTFAHLTALHRRFNLIDEKET
DVLRDLEVALRLTDDTGGCQDATSTTSSVHDHSHSGDLQHQSLQQQQQHH
NSSSNSTSSAEAFHVNSQSNNGSTSASASVSLIDGDAVAPPICTQPEAGA
GCKPAGSSGLLGGILGDLTSGEFGDTTRYCTSAVPQAAAAAGAGVGGTAI
GATDAAALNNGAGALHLNFSNNNNNNHNLNHHHHHHHHHGHHGHHHAAQQ
QQQHSGLIQCNAAGGGGNATGVATGGATAAASSTTTA*

RE65017.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24543-PA 545 GF24543-PA 1..466 1..464 1759 84 Plus
Dana\GF18448-PA 221 GF18448-PA 42..218 141..315 371 40.7 Plus
Dana\GF15759-PA 220 GF15759-PA 44..211 141..306 327 34.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13915-PA 542 GG13915-PA 1..542 1..537 2711 95.3 Plus
Dere\GG11134-PA 219 GG11134-PA 40..216 141..315 373 40.7 Plus
Dere\GG10099-PA 220 GG10099-PA 44..211 141..306 334 35.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16639-PA 504 GH16639-PA 1..377 75..435 1553 80.9 Plus
Dgri\GH13388-PA 219 GH13388-PA 40..216 141..315 368 40.1 Plus
Dgri\GH13517-PA 220 GH13517-PA 44..211 141..306 327 35.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mob2-PE 537 CG11711-PE 1..537 1..537 2814 100 Plus
Mob2-PB 537 CG11711-PB 1..537 1..537 2814 100 Plus
Mob2-PD 566 CG11711-PD 127..566 98..537 2276 98 Plus
Mob2-PC 431 CG11711-PC 2..431 108..537 2273 100 Plus
Mob2-PA 728 CG11711-PA 297..728 106..537 2268 99.3 Plus
mats-PC 219 CG13852-PC 36..216 137..315 360 40.3 Plus
mats-PB 219 CG13852-PB 36..216 137..315 360 40.3 Plus
mats-PA 219 CG13852-PA 36..216 137..315 360 40.3 Plus
Mob3-PA 220 CG4946-PA 44..211 141..306 322 35.7 Plus
grn-PB 699 CG9656-PB 256..440 320..532 184 31.3 Plus
grn-PC 712 CG9656-PC 256..440 320..532 184 31.3 Plus
Prosap-PD 1806 CG30483-PD 319..414 439..534 180 40.6 Plus
Prosap-PA 1871 CG30483-PA 384..479 439..534 180 40.6 Plus
bun-PF 1097 CG42281-PM 93..254 351..537 171 28.6 Plus
bun-PP 1137 CG42281-PP 93..254 351..537 171 28.6 Plus
bun-PA 1206 CG42281-PK 202..363 351..537 171 28.6 Plus
bun-PG 1331 CG42281-PJ 93..254 351..537 171 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11596-PA 1030 GI11596-PA 34..442 28..435 1557 77.9 Plus
Dmoj\GI22385-PA 219 GI22385-PA 40..216 141..315 369 40.1 Plus
Dmoj\GI18135-PA 221 GI18135-PA 44..211 141..306 341 37.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22820-PA 395 GL22820-PA 1..309 188..476 894 73.8 Plus
Dper\GL24215-PA 219 GL24215-PA 40..216 141..315 368 40.1 Plus
Dper\GL20586-PA 122 GL20586-PA 1..118 1..131 354 65.4 Plus
Dper\GL18994-PA 220 GL18994-PA 44..211 141..306 333 35.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11155-PA 562 GA11155-PA 1..470 1..470 1728 79.9 Plus
Dpse\GA26541-PA 219 GA26541-PA 40..216 141..315 368 40.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24744-PA 564 GM24744-PA 1..477 1..483 2471 96.3 Plus
Dsec\GM26432-PA 219 GM26432-PA 40..216 141..315 371 40.7 Plus
Dsec\GM18081-PA 220 GM18081-PA 44..211 141..306 332 35.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12801-PA 540 GD12801-PA 1..540 1..537 2777 97.2 Plus
Dsim\GD20949-PA 219 GD20949-PA 40..216 141..315 371 40.7 Plus
Dsim\GD23671-PA 220 GD23671-PA 44..211 141..306 332 35.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11275-PA 560 GJ11275-PA 1..438 1..435 1615 77.5 Plus
Dvir\GJ24418-PA 221 GJ24418-PA 42..218 141..315 368 40.1 Plus
Dvir\GJ14867-PA 220 GJ14867-PA 44..211 141..306 325 35.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17021-PA 597 GK17021-PA 108..591 97..537 1398 68.5 Plus
Dwil\GK13074-PA 221 GK13074-PA 42..218 141..315 377 40.7 Plus
Dwil\GK18525-PA 106 GK18525-PA 44..103 141..200 159 43.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20209-PA 539 GE20209-PA 1..539 1..537 2706 95.1 Plus
Dyak\GE10299-PA 219 GE10299-PA 40..216 141..315 371 40.7 Plus
Dyak\GE18913-PA 220 GE18913-PA 44..211 141..306 334 35.7 Plus