BDGP Sequence Production Resources |
Search the DGRC for RE65017
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 650 |
Well: | 17 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mob2-RB |
Protein status: | RE65017.pep: gold |
Sequenced Size: | 1881 |
Gene | Date | Evidence |
---|---|---|
Mob2-RB | 2009-06-22 | Replacement based on scoring |
1881 bp assembled on 2010-06-04
GenBank Submission: BT124999.1
> RE65017.complete AGGCTTCTGATTCCGCTGCCGAACGGCGGGCGCACGCACGCAGTTAAAAA AATAAATAAATAAAAAGAGAAGGCAAGATGACCAAAGCAACGTAAATAAT ACCAAAAAATGAAAGAAACTCTAAGCTCAAAGGTGCCAACAAGAATAGGA GTAACGTTTGTGTCTGAATCGGATCCAAAGAAAAAGTTCAAAAGTTCGCC ATCAACGTCGAGCTCAACAATATCAACGGCGACAATAACAAGCACAACAA CAACAACAACAACAACCGCATCGCCCCCACCGCCCCAAACTTCGTATGTG ATTAAATGTCTATTGAAGACCGCTCGTTTTATGTGGCAAGTGACGACAAT ACCCTCTAAAATCGGTGATACCATTGGTACCCTGTACCGTTATGCTCAGG ATTCAGTTGATAGTTTTCTATGCGTAGCTGGCAAGGCCCGTCGCAAGGAA CGCGATGGCGATCAAAATTCAACAGACACCAAATTGTATTTGGAGGAAAG TGTCCTAGAACGTAAATTACCTGAAGCTGATCTCAAAGCCCTAGTGGATC TTCCAGCTGGTTTGGACTACAATGAATGGCTAGCGTCACACACCCTCGCT CTATTTGAGCACGTGAATTTGGTCTATGGAACTATTAGTGAATTTTGTAC ACAATCCGGTTGCGCTGACATGACCGGACCCGGCAACAGAACGTACTTAT GGTTCGACGAGAAGGGCAAGAAGACGCGCGTCGCAGCACCACAGTACATC GACTATGTGATGACGTTCACCCAGAAGACGGTCAGCGATGAGTCGATATT CCCAACCAAATACGCCAACGAGTTCCCCGGCTCGTTCGAGTCGATTGCGC GGAAGATACTACGCTTGCAATTTCATGTGATAGCGCATCTGTATGCGGCG CATTTCAGAGAAATCGCGCTGCTCGGCTTGCACACCCATCTAAATCTGAC TTTCGCGCACCTCACCGCACTGCACCGGCGCTTCAATTTGATCGACGAGA AGGAGACGGACGTGCTGCGCGACCTTGAGGTGGCCCTGCGCCTCACCGAC GATACCGGTGGATGCCAGGATGCTACCTCCACGACGTCGTCGGTCCATGA CCACTCCCACTCCGGCGATCTCCAGCATCAGTCGCTGCAACAGCAGCAGC AACACCACAACAGCAGCAGCAACAGCACCTCCTCGGCGGAGGCGTTTCAC GTCAATTCACAAAGCAACAATGGCAGCACATCCGCCTCGGCATCGGTATC CCTAATCGATGGCGATGCGGTGGCGCCGCCCATTTGCACGCAACCAGAGG CGGGTGCGGGCTGCAAGCCAGCGGGCAGCAGCGGATTGCTGGGCGGTATA CTGGGCGACCTGACCAGCGGCGAATTTGGTGATACAACGCGCTACTGCAC ATCGGCAGTTCCTCAGGCGGCGGCAGCAGCGGGTGCGGGTGTGGGTGGTA CAGCGATCGGTGCCACGGATGCTGCCGCATTGAACAACGGCGCTGGCGCA CTACATTTAAACTTTAGCAACAATAATAACAATAATCATAATCTGAATCA CCATCACCACCATCATCACCACCACGGCCACCATGGCCATCATCATGCGG CACAGCAGCAGCAGCAGCACAGTGGACTCATACAGTGCAATGCGGCGGGC GGCGGAGGGAATGCAACAGGGGTAGCCACGGGCGGAGCAACTGCAGCAGC GTCCTCGACCACCACGGCATAGTGGGGCAAAAGCTAAGAAGAGAGCAGCA GCAGCAGCAGCAGCAACAGCAACAACAAAAAACATTAGAAATACTAGATT TACGCAAAAATGTTATTTAATGTTACTTCTATGATCCTAAAGTTGAAAAT ATTGTAAAAATAACAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mob2.a | 3639 | Mob2.a | 262..2073 | 69..1880 | 9015 | 99.8 | Plus |
Mob2-RB | 3482 | Mob2-RB | 106..1916 | 70..1880 | 9010 | 99.8 | Plus |
Mob2-RC | 3633 | Mob2-RC | 617..2067 | 430..1880 | 7210 | 99.7 | Plus |
Mob2.a | 3639 | Mob2.a | 111..176 | 4..69 | 330 | 100 | Plus |
Mob2-RB | 3482 | Mob2-RB | 3..68 | 4..69 | 330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 11515212..11516388 | 1863..687 | 5870 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 11518342..11518705 | 431..68 | 1805 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 11518069..11518230 | 592..431 | 810 | 100 | Minus |
chr3L | 24539361 | chr3L | 11516452..11516548 | 689..593 | 485 | 100 | Minus |
chr3L | 24539361 | chr3L | 11525324..11525389 | 69..4 | 330 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 11524323..11525516 | 1880..687 | 5925 | 99.7 | Minus |
3L | 28110227 | 3L | 11527455..11527818 | 431..68 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 11527182..11527343 | 592..431 | 810 | 100 | Minus |
3L | 28110227 | 3L | 11525580..11525676 | 689..593 | 485 | 100 | Minus |
3L | 28110227 | 3L | 11534427..11534492 | 69..4 | 330 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 11517423..11518616 | 1880..687 | 5925 | 99.7 | Minus |
3L | 28103327 | 3L | 11520555..11520918 | 431..68 | 1820 | 100 | Minus |
3L | 28103327 | 3L | 11520282..11520443 | 592..431 | 810 | 100 | Minus |
3L | 28103327 | 3L | 11518680..11518776 | 689..593 | 485 | 100 | Minus |
3L | 28103327 | 3L | 11527527..11527592 | 69..4 | 330 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 21..48 | 1515..1542 | 113 | 89.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7059..7086 | 1515..1542 | 113 | 89.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 11515953..11516385 | 690..1122 | 100 | <- | Minus |
chr3L | 11516452..11516548 | 593..689 | 100 | <- | Minus |
chr3L | 11518069..11518229 | 432..592 | 100 | <- | Minus |
chr3L | 11518342..11518506 | 267..431 | 99 | == | Minus |
chr3L | 11518559..11518705 | 68..214 | 100 | == | Minus |
chr3L | 11525350..11525392 | 1..43 | 97 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RB | 1..1614 | 109..1722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RB | 1..1614 | 109..1722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RB | 1..1614 | 109..1722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RB | 1..1614 | 109..1722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RB | 1..44 | 26..69 | 100 | -> | Plus |
Mob2-RB | 82..1875 | 70..1864 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RB | 1..44 | 26..69 | 100 | -> | Plus |
Mob2-RB | 82..1875 | 70..1864 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RE | 1..51 | 18..68 | 100 | -- | Plus |
Mob2-RE | 138..1932 | 69..1864 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mob2-RE | 138..1932 | 69..1864 | 99 | Plus | |
Mob2-RE | 1..51 | 18..68 | 100 | -- | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11524339..11525513 | 690..1864 | 99 | <- | Minus |
3L | 11525580..11525676 | 593..689 | 100 | <- | Minus |
3L | 11527182..11527342 | 432..592 | 100 | <- | Minus |
3L | 11527455..11527816 | 70..431 | 100 | <- | Minus |
3L | 11534427..11534495 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11524339..11525513 | 690..1864 | 99 | <- | Minus |
3L | 11525580..11525676 | 593..689 | 100 | <- | Minus |
3L | 11527182..11527342 | 432..592 | 100 | <- | Minus |
3L | 11527455..11527816 | 70..431 | 100 | <- | Minus |
3L | 11534427..11534495 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11524339..11525513 | 690..1864 | 99 | <- | Minus |
3L | 11525580..11525676 | 593..689 | 100 | <- | Minus |
3L | 11527182..11527342 | 432..592 | 100 | <- | Minus |
3L | 11527455..11527816 | 70..431 | 100 | <- | Minus |
3L | 11534427..11534495 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 11517439..11518613 | 690..1864 | 99 | <- | Minus |
arm_3L | 11518680..11518776 | 593..689 | 100 | <- | Minus |
arm_3L | 11520282..11520442 | 432..592 | 100 | <- | Minus |
arm_3L | 11520555..11520916 | 70..431 | 100 | <- | Minus |
arm_3L | 11527527..11527595 | 1..69 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11517439..11518613 | 690..1864 | 99 | <- | Minus |
3L | 11518680..11518776 | 593..689 | 100 | <- | Minus |
3L | 11520282..11520442 | 432..592 | 100 | <- | Minus |
3L | 11520555..11520916 | 70..431 | 100 | <- | Minus |
3L | 11527527..11527595 | 1..69 | 98 | Minus |
Translation from 108 to 1721
> RE65017.hyp MKETLSSKVPTRIGVTFVSESDPKKKFKSSPSTSSSTISTATITSTTTTT TTTASPPPPQTSYVIKCLLKTARFMWQVTTIPSKIGDTIGTLYRYAQDSV DSFLCVAGKARRKERDGDQNSTDTKLYLEESVLERKLPEADLKALVDLPA GLDYNEWLASHTLALFEHVNLVYGTISEFCTQSGCADMTGPGNRTYLWFD EKGKKTRVAAPQYIDYVMTFTQKTVSDESIFPTKYANEFPGSFESIARKI LRLQFHVIAHLYAAHFREIALLGLHTHLNLTFAHLTALHRRFNLIDEKET DVLRDLEVALRLTDDTGGCQDATSTTSSVHDHSHSGDLQHQSLQQQQQHH NSSSNSTSSAEAFHVNSQSNNGSTSASASVSLIDGDAVAPPICTQPEAGA GCKPAGSSGLLGGILGDLTSGEFGDTTRYCTSAVPQAAAAAGAGVGGTAI GATDAAALNNGAGALHLNFSNNNNNNHNLNHHHHHHHHHGHHGHHHAAQQ QQQHSGLIQCNAAGGGGNATGVATGGATAAASSTTTA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mob2-PE | 537 | CG11711-PE | 1..537 | 1..537 | 2814 | 100 | Plus |
Mob2-PB | 537 | CG11711-PB | 1..537 | 1..537 | 2814 | 100 | Plus |
Mob2-PD | 566 | CG11711-PD | 127..566 | 98..537 | 2276 | 98 | Plus |
Mob2-PC | 431 | CG11711-PC | 2..431 | 108..537 | 2273 | 100 | Plus |
Mob2-PA | 728 | CG11711-PA | 297..728 | 106..537 | 2268 | 99.3 | Plus |
Translation from 108 to 1721
> RE65017.pep MKETLSSKVPTRIGVTFVSESDPKKKFKSSPSTSSSTISTATITSTTTTT TTTASPPPPQTSYVIKCLLKTARFMWQVTTIPSKIGDTIGTLYRYAQDSV DSFLCVAGKARRKERDGDQNSTDTKLYLEESVLERKLPEADLKALVDLPA GLDYNEWLASHTLALFEHVNLVYGTISEFCTQSGCADMTGPGNRTYLWFD EKGKKTRVAAPQYIDYVMTFTQKTVSDESIFPTKYANEFPGSFESIARKI LRLQFHVIAHLYAAHFREIALLGLHTHLNLTFAHLTALHRRFNLIDEKET DVLRDLEVALRLTDDTGGCQDATSTTSSVHDHSHSGDLQHQSLQQQQQHH NSSSNSTSSAEAFHVNSQSNNGSTSASASVSLIDGDAVAPPICTQPEAGA GCKPAGSSGLLGGILGDLTSGEFGDTTRYCTSAVPQAAAAAGAGVGGTAI GATDAAALNNGAGALHLNFSNNNNNNHNLNHHHHHHHHHGHHGHHHAAQQ QQQHSGLIQCNAAGGGGNATGVATGGATAAASSTTTA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24543-PA | 545 | GF24543-PA | 1..466 | 1..464 | 1759 | 84 | Plus |
Dana\GF18448-PA | 221 | GF18448-PA | 42..218 | 141..315 | 371 | 40.7 | Plus |
Dana\GF15759-PA | 220 | GF15759-PA | 44..211 | 141..306 | 327 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13915-PA | 542 | GG13915-PA | 1..542 | 1..537 | 2711 | 95.3 | Plus |
Dere\GG11134-PA | 219 | GG11134-PA | 40..216 | 141..315 | 373 | 40.7 | Plus |
Dere\GG10099-PA | 220 | GG10099-PA | 44..211 | 141..306 | 334 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16639-PA | 504 | GH16639-PA | 1..377 | 75..435 | 1553 | 80.9 | Plus |
Dgri\GH13388-PA | 219 | GH13388-PA | 40..216 | 141..315 | 368 | 40.1 | Plus |
Dgri\GH13517-PA | 220 | GH13517-PA | 44..211 | 141..306 | 327 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mob2-PE | 537 | CG11711-PE | 1..537 | 1..537 | 2814 | 100 | Plus |
Mob2-PB | 537 | CG11711-PB | 1..537 | 1..537 | 2814 | 100 | Plus |
Mob2-PD | 566 | CG11711-PD | 127..566 | 98..537 | 2276 | 98 | Plus |
Mob2-PC | 431 | CG11711-PC | 2..431 | 108..537 | 2273 | 100 | Plus |
Mob2-PA | 728 | CG11711-PA | 297..728 | 106..537 | 2268 | 99.3 | Plus |
mats-PC | 219 | CG13852-PC | 36..216 | 137..315 | 360 | 40.3 | Plus |
mats-PB | 219 | CG13852-PB | 36..216 | 137..315 | 360 | 40.3 | Plus |
mats-PA | 219 | CG13852-PA | 36..216 | 137..315 | 360 | 40.3 | Plus |
Mob3-PA | 220 | CG4946-PA | 44..211 | 141..306 | 322 | 35.7 | Plus |
grn-PB | 699 | CG9656-PB | 256..440 | 320..532 | 184 | 31.3 | Plus |
grn-PC | 712 | CG9656-PC | 256..440 | 320..532 | 184 | 31.3 | Plus |
Prosap-PD | 1806 | CG30483-PD | 319..414 | 439..534 | 180 | 40.6 | Plus |
Prosap-PA | 1871 | CG30483-PA | 384..479 | 439..534 | 180 | 40.6 | Plus |
bun-PF | 1097 | CG42281-PM | 93..254 | 351..537 | 171 | 28.6 | Plus |
bun-PP | 1137 | CG42281-PP | 93..254 | 351..537 | 171 | 28.6 | Plus |
bun-PA | 1206 | CG42281-PK | 202..363 | 351..537 | 171 | 28.6 | Plus |
bun-PG | 1331 | CG42281-PJ | 93..254 | 351..537 | 171 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11596-PA | 1030 | GI11596-PA | 34..442 | 28..435 | 1557 | 77.9 | Plus |
Dmoj\GI22385-PA | 219 | GI22385-PA | 40..216 | 141..315 | 369 | 40.1 | Plus |
Dmoj\GI18135-PA | 221 | GI18135-PA | 44..211 | 141..306 | 341 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22820-PA | 395 | GL22820-PA | 1..309 | 188..476 | 894 | 73.8 | Plus |
Dper\GL24215-PA | 219 | GL24215-PA | 40..216 | 141..315 | 368 | 40.1 | Plus |
Dper\GL20586-PA | 122 | GL20586-PA | 1..118 | 1..131 | 354 | 65.4 | Plus |
Dper\GL18994-PA | 220 | GL18994-PA | 44..211 | 141..306 | 333 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11155-PA | 562 | GA11155-PA | 1..470 | 1..470 | 1728 | 79.9 | Plus |
Dpse\GA26541-PA | 219 | GA26541-PA | 40..216 | 141..315 | 368 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24744-PA | 564 | GM24744-PA | 1..477 | 1..483 | 2471 | 96.3 | Plus |
Dsec\GM26432-PA | 219 | GM26432-PA | 40..216 | 141..315 | 371 | 40.7 | Plus |
Dsec\GM18081-PA | 220 | GM18081-PA | 44..211 | 141..306 | 332 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12801-PA | 540 | GD12801-PA | 1..540 | 1..537 | 2777 | 97.2 | Plus |
Dsim\GD20949-PA | 219 | GD20949-PA | 40..216 | 141..315 | 371 | 40.7 | Plus |
Dsim\GD23671-PA | 220 | GD23671-PA | 44..211 | 141..306 | 332 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11275-PA | 560 | GJ11275-PA | 1..438 | 1..435 | 1615 | 77.5 | Plus |
Dvir\GJ24418-PA | 221 | GJ24418-PA | 42..218 | 141..315 | 368 | 40.1 | Plus |
Dvir\GJ14867-PA | 220 | GJ14867-PA | 44..211 | 141..306 | 325 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17021-PA | 597 | GK17021-PA | 108..591 | 97..537 | 1398 | 68.5 | Plus |
Dwil\GK13074-PA | 221 | GK13074-PA | 42..218 | 141..315 | 377 | 40.7 | Plus |
Dwil\GK18525-PA | 106 | GK18525-PA | 44..103 | 141..200 | 159 | 43.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20209-PA | 539 | GE20209-PA | 1..539 | 1..537 | 2706 | 95.1 | Plus |
Dyak\GE10299-PA | 219 | GE10299-PA | 40..216 | 141..315 | 371 | 40.7 | Plus |
Dyak\GE18913-PA | 220 | GE18913-PA | 44..211 | 141..306 | 334 | 35.7 | Plus |