BDGP Sequence Production Resources |
Search the DGRC for RE65032
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 650 |
Well: | 32 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Vps35-RA |
Protein status: | RE65032.pep: gold |
Preliminary Size: | 2664 |
Sequenced Size: | 3025 |
Gene | Date | Evidence |
---|---|---|
CG5625 | 2004-07-14 | Blastp of sequenced clone |
CG5625 | 2008-04-29 | Release 5.5 accounting |
CG5625 | 2008-08-15 | Release 5.9 accounting |
CG5625 | 2008-12-18 | 5.12 accounting |
3025 bp (3025 high quality bases) assembled on 2004-07-14
GenBank Submission: BT015203
> RE65032.complete AATCGATATCAGGACGTCCAATGTGTCTGTCGGCTGTCGGCAATCGATAT CTCCTCTGCAAATAGATATTTTCAGAATAATTGGCTTATTTCACTTCGCC CTAACGCTGCAGTAATGACCATGCCGAATGGTTTGGATGACCAGGAGAAG CTGCTCGCTGAAGCCATTGGACTAGCGAGGAAGCAGGCCTTTCAAATGAA CCACTTTCTGGATAAGGAGCGTATGCTGGACTCGCTCAAGTGCGCCAGCA CCATGCTGGGCGAGCTGCGGACCTCCGTCCTTTCCCCCAAAAGTTACTAC GAGCTGTACATGGCCGTCACCAACGAACTGTGCCACCTGGAGCTGTACCT CAGCGAGAAAATCGACAAGAAAACGGATTTGTACGAGCTCGTTCAGTACT CGCATACTATTGTGCCGCGGTTGTACCTCCTCATAACAGTGGGCATTGTG TATATCAAGAATGACCCTACGCTGAAGCGCAGCATTCTAAAGGACCTGGT CGAGATGTGCCGCGGTGTCCAGCATCCGTTGCGAGGCCTCTTTCTGCGCA ACTACCTGCTGCAGTGCACCCGGAACATCCTGCCCGATGTGATGGTTGAG GAGAACGAGCACGAGGGCAATGTCTATGATGCCATCGACTTCGTGCTGAC CAACTTTGCCGAGATGAACAAGCTGTGGGTCCGCATGCAGCACCAGGGAC ACTCCAGCGAAAAGACGCGTCGCGAGAAGGAGCGTGAGGAACTAAAGATC CTGGTAGGCACTAATCTGGTGCGGTTGTCCCAGCTGGAGTCGGCCACTCT GGAAATCTACCAGCGACTCATTCTACCCGGCATCCTGGAGCAGGTGGTCA GCTGTCGCGATGCAATTGCACAGGAGTACCTAATGGAGTGCATCATCCAG GTGTTCCCCGACGAGTTCCACCTAAAGACACTTGACCCCTTCCTAAAGTC CTGCGCTCAGCTGGAGACCGGTGTTAATGTGAAGAACATCATAATATCGT TAATCGAACGATTGGCTGCCTATAACCAGCGAAGTGGCAAGACAAGTGGT AATGCCATCGATGCCATCATACCCGCCGAGGTGGAACTGTTTGAAGTTTT CAGTGTCCAAGTGGCTAACATCGTGCAGACCCGAATGGACATGCCGTTGG AGGACACCATATCGCTGCAGGTTGCTCTGCTGAGCTTGGCTCAGAAAGTG TATCCCGATCGAGTTGACTATGTAGATAAGGTGCTGGGCACAACCGCTCA AATTTTGCAGCGCATGAACATGAACAACATCTCCCATTTGCTATCTGTAA ACCAGGAGTTATCGCGCCTTCTGCGCATCTGTATCGACTTCTACAACAAC GCCTTGACCATAATTCAACTTCAAAACTTTTGCCCGCTGCTCGAAAAGTT TGACTACACATCCCGTAAATCGCTGGCCCTGTACCTAGTTATGAACATCT TGGACAACGAAACCCTAGTTCCAACAGCTGATCAGGCGGATAGTCTGCTG ACCATCATTACGCCGTTGATTAAGGACGATGATACGAACAAAGAAAACGG CGCGGCAGCAGGAAATACGACTCCGGATGCCGAGGAGTTTGCCGAAGAGC AGGGGGTTGTGGCACGATTTATTCACCTCATGCGCTCAGATGAACCGGAC ATGCAGTATAAAATGCTGCAGACCGCCCGAAAGCATCTGGGAAATGGGGG CGGGCAAAGGCTAAAGCATGTCCTACCTCCGCTTGTCTTCGCCGCCTATC AGCTGGCCTTCAAGTACAAGGCGATCGCCGAGCAGGATGAGAACTGGGAC AAGAAGTGTCAGAAAATCGTGCAATACTGCCACAGTACCATCAGTGCGCT GGCCAAAGCCGATCTCGCAGACCTAGCCCTGCGTCTATACCTGCAAGGTG CCCTGGTCATTGGGGAGATCGGTTATACGAATCACGAAACGGTGGCATAC GAATTCATGACCCAGGCCTTCTCCCTCTACGAAGACGAGATCTCCGACTC AAAGGCCCAGCTTGCAGCCATAACGCTCATCATGTCCACTTTTGAACAAA TGTCCTGCTTTGGCGAGGAGAACGCTGAGCCGCTTAGGACGAATTGTGCG CTGGCTGCTTCAAAATTGCTGAAAAAACCGGATCAATGTCGCGGTGTTGT GGCCTGTGCGGCGCTTTTCTGGAGTGGAAAGCAAAACGGCGAGGAGATGC GTGACGAGAAGCGAACTTTGGACTGCTTAAAGAAGGGTGCTCGCATCGCT TCGCAGTGCTTGGATACCGGAGTGCAAGTTCAATTGTATGTGGAGCTGCT GAATCACTATCTGTTTTACTTCGAACGCGGCAACTCGCTTATCACTGTGG CTATGCTCAACCAGCTAATTGCCAAGGTGAATGAGGAGCTGCCCAACCTG GAGCCCAGCGAGGAGACCAAACAGATCGAGAGCCATTACAAGAACACGCT GGCACACATCCGCAGTCGCATGGAATCCAATGACTCGTCGCTGGAGGTCT CCTTTGCGGGCATAACTCTCAATTAGCCCAGCGCACCCACTTTGGATAAC CCTGGGAAGCATCCAAGCGCTACTAAAGCCCTGCAGGAGGATCAGCCAGG CCCGTTTTTATACAGCTAGTTATCAACTTGCTCGTAGACCGTTTAGACTT ATTCAAAGCTCTGCGAGAGTATTCAAATTGCTTGTGTGTGAAACTAAATT CCATGGTTAGGAAAGTTGTGGGCCTTCGACCAACTTTTGATTTGTCAATT TGATTTCGATCGTAATCGTAAGTGCAAAGTAAAAACATTCTTGATTATTT CCCCAATTTATTTAGTATGATAGCTATGCGTATATTTACCCCAGAGGATT TTTAATTTACCATATTTAATCTCCAAACCTTCCCTAAAAAATAATGTGAA AATATTGTTAAACAAAATCTTACATACCATTATCGAATTGGTTCACGAAT CGCCACGCGCTACGTATAAATATGTATTACAAATAAAGTTAAGACCAAAT TGTTTTCGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18073299..18074032 | 308..1041 | 3580 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 18075649..18076305 | 2362..3009 | 3040 | 97.9 | Plus |
chr2R | 21145070 | chr2R | 18074781..18075346 | 1616..2181 | 2770 | 99.3 | Plus |
chr2R | 21145070 | chr2R | 18074390..18074728 | 1278..1616 | 1680 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 18074096..18074333 | 1040..1277 | 1130 | 98.3 | Plus |
chr2R | 21145070 | chr2R | 18073048..18073238 | 117..307 | 955 | 100 | Plus |
chr2R | 21145070 | chr2R | 18075406..18075589 | 2181..2364 | 905 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 18072510..18072626 | 1..117 | 555 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22186768..22187501 | 308..1041 | 3670 | 100 | Plus |
2R | 25286936 | 2R | 22189111..22189762 | 2362..3013 | 3260 | 100 | Plus |
2R | 25286936 | 2R | 22188244..22188809 | 1616..2181 | 2830 | 100 | Plus |
2R | 25286936 | 2R | 22187852..22188190 | 1278..1616 | 1695 | 100 | Plus |
2R | 25286936 | 2R | 22187558..22187795 | 1040..1277 | 1190 | 100 | Plus |
2R | 25286936 | 2R | 22186516..22186706 | 117..307 | 955 | 100 | Plus |
2R | 25286936 | 2R | 22188868..22189051 | 2181..2364 | 920 | 100 | Plus |
2R | 25286936 | 2R | 22185978..22186094 | 1..117 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22187967..22188700 | 308..1041 | 3670 | 100 | Plus |
2R | 25260384 | 2R | 22190310..22190961 | 2362..3013 | 3260 | 100 | Plus |
2R | 25260384 | 2R | 22189443..22190008 | 1616..2181 | 2830 | 100 | Plus |
2R | 25260384 | 2R | 22189051..22189389 | 1278..1616 | 1695 | 100 | Plus |
2R | 25260384 | 2R | 22188757..22188994 | 1040..1277 | 1190 | 100 | Plus |
2R | 25260384 | 2R | 22187715..22187905 | 117..307 | 955 | 100 | Plus |
2R | 25260384 | 2R | 22190067..22190250 | 2181..2364 | 920 | 100 | Plus |
2R | 25260384 | 2R | 22187177..22187293 | 1..117 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Juan | 4236 | Juan JUAN 4236bp | 4026..4097 | 2853..2927 | 116 | 65.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18074782..18075345 | 1617..2180 | 99 | -> | Plus |
chr2R | 18072510..18072626 | 1..117 | 98 | -> | Plus |
chr2R | 18073049..18073238 | 118..307 | 100 | -> | Plus |
chr2R | 18073299..18074032 | 308..1041 | 99 | -> | Plus |
chr2R | 18074098..18074333 | 1042..1277 | 98 | -> | Plus |
chr2R | 18074390..18074728 | 1278..1616 | 99 | -> | Plus |
chr2R | 18075406..18075589 | 2181..2364 | 99 | -> | Plus |
chr2R | 18075652..18076305 | 2365..3009 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5625-RA | 1..2412 | 115..2526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RA | 1..2412 | 115..2526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RA | 1..2412 | 115..2526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5625-RA | 1..2412 | 115..2526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RA | 1..2412 | 115..2526 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5625-RA | 1..3009 | 1..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RA | 1..3009 | 1..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RA | 7..3015 | 1..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5625-RA | 1..3009 | 1..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps35-RA | 7..3015 | 1..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22185978..22186094 | 1..117 | 100 | -> | Plus |
2R | 22186517..22186706 | 118..307 | 100 | -> | Plus |
2R | 22186768..22187501 | 308..1041 | 100 | -> | Plus |
2R | 22187560..22187795 | 1042..1277 | 100 | -> | Plus |
2R | 22187852..22188190 | 1278..1616 | 100 | -> | Plus |
2R | 22188245..22188808 | 1617..2180 | 100 | -> | Plus |
2R | 22188868..22189051 | 2181..2364 | 100 | -> | Plus |
2R | 22189114..22189758 | 2365..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22185978..22186094 | 1..117 | 100 | -> | Plus |
2R | 22186517..22186706 | 118..307 | 100 | -> | Plus |
2R | 22186768..22187501 | 308..1041 | 100 | -> | Plus |
2R | 22187560..22187795 | 1042..1277 | 100 | -> | Plus |
2R | 22187852..22188190 | 1278..1616 | 100 | -> | Plus |
2R | 22188245..22188808 | 1617..2180 | 100 | -> | Plus |
2R | 22188868..22189051 | 2181..2364 | 100 | -> | Plus |
2R | 22189114..22189758 | 2365..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22185978..22186094 | 1..117 | 100 | -> | Plus |
2R | 22186517..22186706 | 118..307 | 100 | -> | Plus |
2R | 22186768..22187501 | 308..1041 | 100 | -> | Plus |
2R | 22187560..22187795 | 1042..1277 | 100 | -> | Plus |
2R | 22187852..22188190 | 1278..1616 | 100 | -> | Plus |
2R | 22188245..22188808 | 1617..2180 | 100 | -> | Plus |
2R | 22188868..22189051 | 2181..2364 | 100 | -> | Plus |
2R | 22189114..22189758 | 2365..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18074022..18074211 | 118..307 | 100 | -> | Plus |
arm_2R | 18073483..18073599 | 1..117 | 100 | -> | Plus |
arm_2R | 18074273..18075006 | 308..1041 | 100 | -> | Plus |
arm_2R | 18075065..18075300 | 1042..1277 | 100 | -> | Plus |
arm_2R | 18075357..18075695 | 1278..1616 | 100 | -> | Plus |
arm_2R | 18075750..18076313 | 1617..2180 | 100 | -> | Plus |
arm_2R | 18076373..18076556 | 2181..2364 | 100 | -> | Plus |
arm_2R | 18076619..18077263 | 2365..3009 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22187967..22188700 | 308..1041 | 100 | -> | Plus |
2R | 22188759..22188994 | 1042..1277 | 100 | -> | Plus |
2R | 22189051..22189389 | 1278..1616 | 100 | -> | Plus |
2R | 22189444..22190007 | 1617..2180 | 100 | -> | Plus |
2R | 22190067..22190250 | 2181..2364 | 100 | -> | Plus |
2R | 22190313..22190957 | 2365..3009 | 100 | Plus | |
2R | 22187177..22187293 | 1..117 | 100 | -> | Plus |
2R | 22187716..22187905 | 118..307 | 100 | -> | Plus |
Translation from 0 to 2525
> RE65032.hyp NRYQDVQCVCRLSAIDISSANRYFQNNWLISLRPNAAVMTMPNGLDDQEK LLAEAIGLARKQAFQMNHFLDKERMLDSLKCASTMLGELRTSVLSPKSYY ELYMAVTNELCHLELYLSEKIDKKTDLYELVQYSHTIVPRLYLLITVGIV YIKNDPTLKRSILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDVMVE ENEHEGNVYDAIDFVLTNFAEMNKLWVRMQHQGHSSEKTRREKEREELKI LVGTNLVRLSQLESATLEIYQRLILPGILEQVVSCRDAIAQEYLMECIIQ VFPDEFHLKTLDPFLKSCAQLETGVNVKNIIISLIERLAAYNQRSGKTSG NAIDAIIPAEVELFEVFSVQVANIVQTRMDMPLEDTISLQVALLSLAQKV YPDRVDYVDKVLGTTAQILQRMNMNNISHLLSVNQELSRLLRICIDFYNN ALTIIQLQNFCPLLEKFDYTSRKSLALYLVMNILDNETLVPTADQADSLL TIITPLIKDDDTNKENGAAAGNTTPDAEEFAEEQGVVARFIHLMRSDEPD MQYKMLQTARKHLGNGGGQRLKHVLPPLVFAAYQLAFKYKAIAEQDENWD KKCQKIVQYCHSTISALAKADLADLALRLYLQGALVIGEIGYTNHETVAY EFMTQAFSLYEDEISDSKAQLAAITLIMSTFEQMSCFGEENAEPLRTNCA LAASKLLKKPDQCRGVVACAALFWSGKQNGEEMRDEKRTLDCLKKGARIA SQCLDTGVQVQLYVELLNHYLFYFERGNSLITVAMLNQLIAKVNEELPNL EPSEETKQIESHYKNTLAHIRSRMESNDSSLEVSFAGITLN*
Translation from 0 to 2525
> RE65032.pep NRYQDVQCVCRLSAIDISSANRYFQNNWLISLRPNAAVMTMPNGLDDQEK LLAEAIGLARKQAFQMNHFLDKERMLDSLKCASTMLGELRTSVLSPKSYY ELYMAVTNELCHLELYLSEKIDKKTDLYELVQYSHTIVPRLYLLITVGIV YIKNDPTLKRSILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDVMVE ENEHEGNVYDAIDFVLTNFAEMNKLWVRMQHQGHSSEKTRREKEREELKI LVGTNLVRLSQLESATLEIYQRLILPGILEQVVSCRDAIAQEYLMECIIQ VFPDEFHLKTLDPFLKSCAQLETGVNVKNIIISLIERLAAYNQRSGKTSG NAIDAIIPAEVELFEVFSVQVANIVQTRMDMPLEDTISLQVALLSLAQKV YPDRVDYVDKVLGTTAQILQRMNMNNISHLLSVNQELSRLLRICIDFYNN ALTIIQLQNFCPLLEKFDYTSRKSLALYLVMNILDNETLVPTADQADSLL TIITPLIKDDDTNKENGAAAGNTTPDAEEFAEEQGVVARFIHLMRSDEPD MQYKMLQTARKHLGNGGGQRLKHVLPPLVFAAYQLAFKYKAIAEQDENWD KKCQKIVQYCHSTISALAKADLADLALRLYLQGALVIGEIGYTNHETVAY EFMTQAFSLYEDEISDSKAQLAAITLIMSTFEQMSCFGEENAEPLRTNCA LAASKLLKKPDQCRGVVACAALFWSGKQNGEEMRDEKRTLDCLKKGARIA SQCLDTGVQVQLYVELLNHYLFYFERGNSLITVAMLNQLIAKVNEELPNL EPSEETKQIESHYKNTLAHIRSRMESNDSSLEVSFAGITLN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12616-PA | 822 | GF12616-PA | 21..822 | 40..841 | 4173 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22173-PA | 822 | GG22173-PA | 14..822 | 34..841 | 4255 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21205-PA | 800 | GH21205-PA | 21..800 | 40..841 | 3869 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps35-PB | 822 | CG5625-PB | 14..822 | 34..841 | 4088 | 99.6 | Plus |
Vps35-PA | 803 | CG5625-PA | 1..803 | 39..841 | 4086 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20494-PA | 818 | GI20494-PA | 21..818 | 40..841 | 4070 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17528-PA | 822 | GL17528-PA | 14..822 | 34..841 | 4123 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24193-PA | 822 | GA24193-PA | 14..822 | 34..841 | 4123 | 95.6 | Plus |
Dpse\GA24193-PB | 801 | GA24193-PB | 1..801 | 41..841 | 4117 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15895-PA | 423 | GM15895-PA | 99..370 | 338..609 | 1356 | 93.8 | Plus |
Dsec\GM15895-PA | 423 | GM15895-PA | 14..107 | 34..126 | 398 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11652-PA | 822 | GD11652-PA | 14..822 | 34..841 | 4277 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22344-PA | 818 | GJ22344-PA | 21..818 | 40..841 | 4076 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20803-PA | 826 | GK20803-PA | 14..826 | 34..841 | 4082 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14166-PA | 822 | GE14166-PA | 14..822 | 34..841 | 4256 | 98.4 | Plus |