BDGP Sequence Production Resources |
Search the DGRC for RE65121
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 651 |
Well: | 21 |
Vector: | pFlc-1 |
Associated Gene/Transcript | qm-RA |
Protein status: | RE65121.pep: gold |
Sequenced Size: | 1912 |
Gene | Date | Evidence |
---|---|---|
CG8593 | 2001-12-17 | Blastp of sequenced clone |
CG8583 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8593 | 2003-01-01 | Sim4 clustering to Release 3 |
qm | 2008-04-29 | Release 5.5 accounting |
qm | 2008-08-15 | Release 5.9 accounting |
qm | 2008-12-18 | 5.12 accounting |
1912 bp (1912 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071599
> RE65121.complete AGTCTGTTTTTGGTCTTTCCGTGGTGTAATTGATTTGAGTTGTGCGGATA ACGCGAAAAACCAATCGACGAGCGTCGGCCAGCAATTCTAGTCACGCGTG TCGCGAAGCCAAGCGGTAAACAAAAAGCACGCCCCACACCGCAGTGACCC CCCTCCATCAACACCAACACCACCACCCCCCGCGCTCTATCAAAACAACA AAAGCACACACGCAAGGCCACGGCGGAGCAGCAACAAGAAAAACAACAAC AACGGCGACAACAATGGAAGAACTGAACATCATATTACAGAAGACCAAAG ATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTTACA TACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTTGGC CTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCGGAG ACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATTGAA GACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTACGG CGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGCTGG AGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACCGAA CAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCGCGA CAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGCGCA AAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTCAGC TCCAACAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTACTT TCAGATACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGGAGA ACAAGAGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCGGTA ATCCATGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACATATT ACGCCAGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCTTGT TGGAAAAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCGCTC GACGCAGAGGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTACAT GGACCGCCTGCTCAACAAGCTGCTGTCGTGGAAGACGAGCGATAGCGCCA GCATCACGCAGTCGAACCAGATCAATCACAACAACGTCTCACGCAGCAGC CCCAACCAGAACACGCTCAATTGCAATTAGCAGCCAAAGAGGCAAAAGAG GGAGCAGTCGTGAATTGCGAACGGCAGAGCCTCTTTTGCCGCCAATCCGG GACAGCAGCAGGCCAGCAGCCAGCCGACGCCTGCGTGCCTCAGTGCGCCC CTGTTGCGTTTCCTGCAGAAGCTGAAGATATTCTGAGATTTATGTTACCC TTTGCCAAACCGAAAAGCCCACAGAGAACCCCTACCTTACTGTCAACCGA AACCAGAGCGATGAGAACGGAAATAGGAGGAGGATAGGATTTGGATTTGA TAGTGAATCGGATGAAATGGGATGGATAACAAAACCAACAGCAGCCTTAC AGAAAATTGTTAAGCCAAAATTATACACATGAAAGAAACAAAAAGAAATA AACGGCAAGAGAAACCGGAAAAATAACAAGAAAATTAACCAGATTGCTGA AGTGGAAATGGAAAACTATAAACTATGCGAACATTTTACGGTAGAAACGA CAACTAATAGCCGAGAATTTACAGTGCACGCCCAGATGCAGCTAAACGCA AACGCACCTAACATTTTGCCCATATACTATATACTACTAATGAAAACATT GAAATATATGTAAATGTATTTAAATAAATATTTATGCCAAGTTGTCAACT AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
quemao-RA | 1972 | quemao-RA | 73..1972 | 1..1900 | 9500 | 100 | Plus |
quemao-RB | 2587 | quemao-RB | 113..1732 | 1..1620 | 8100 | 100 | Plus |
quemao-RB | 2587 | quemao-RB | 2342..2587 | 1621..1866 | 1230 | 100 | Plus |
CTCF-RA | 3093 | CTCF-RA | 2981..3093 | 1903..1791 | 565 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 7344360..7344860 | 1120..1620 | 2490 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 7340479..7340807 | 1..329 | 1645 | 100 | Plus |
chr3L | 24539361 | chr3L | 7345466..7345745 | 1621..1900 | 1400 | 100 | Plus |
chr3L | 24539361 | chr3L | 7343595..7343857 | 628..890 | 1270 | 98.9 | Plus |
chr3L | 24539361 | chr3L | 7340993..7341149 | 328..484 | 770 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 7343399..7343544 | 485..630 | 730 | 100 | Plus |
chr3L | 24539361 | chr3L | 7344101..7344230 | 994..1123 | 650 | 100 | Plus |
chr3L | 24539361 | chr3L | 7343923..7344027 | 889..993 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 7352233..7352733 | 1120..1620 | 2505 | 100 | Plus |
3L | 28110227 | 3L | 7348347..7348675 | 1..329 | 1645 | 100 | Plus |
3L | 28110227 | 3L | 7353343..7353625 | 1621..1903 | 1415 | 100 | Plus |
3L | 28110227 | 3L | 7351465..7351727 | 628..890 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 7348861..7349017 | 328..484 | 785 | 100 | Plus |
3L | 28110227 | 3L | 7351269..7351414 | 485..630 | 730 | 100 | Plus |
3L | 28110227 | 3L | 7351971..7352100 | 994..1123 | 650 | 100 | Plus |
3L | 28110227 | 3L | 7351793..7351897 | 889..993 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7345333..7345833 | 1120..1620 | 2505 | 100 | Plus |
3L | 28103327 | 3L | 7341447..7341775 | 1..329 | 1645 | 100 | Plus |
3L | 28103327 | 3L | 7346443..7346725 | 1621..1903 | 1415 | 100 | Plus |
3L | 28103327 | 3L | 7344565..7344827 | 628..890 | 1315 | 100 | Plus |
3L | 28103327 | 3L | 7341961..7342117 | 328..484 | 785 | 100 | Plus |
3L | 28103327 | 3L | 7344369..7344514 | 485..630 | 730 | 100 | Plus |
3L | 28103327 | 3L | 7345071..7345200 | 994..1123 | 650 | 100 | Plus |
3L | 28103327 | 3L | 7344893..7344997 | 889..993 | 525 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1223..1316 | 151..253 | 116 | 62.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7343399..7343543 | 485..629 | 100 | -> | Plus |
chr3L | 7343597..7343857 | 630..890 | 98 | -> | Plus |
chr3L | 7343925..7344027 | 891..993 | 100 | -> | Plus |
chr3L | 7344101..7344228 | 994..1121 | 100 | -> | Plus |
chr3L | 7340995..7341149 | 330..484 | 99 | -> | Plus |
chr3L | 7344362..7344860 | 1122..1620 | 99 | -> | Plus |
chr3L | 7345466..7345745 | 1621..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 1..1017 | 264..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RB | 1..1017 | 264..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 1..1017 | 264..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 1..1017 | 264..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 1..1017 | 264..1280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 33..1932 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 33..1932 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 35..1934 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 33..1932 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
qm-RA | 35..1934 | 1..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7348347..7348675 | 1..329 | 100 | -> | Plus |
3L | 7348863..7349017 | 330..484 | 100 | -> | Plus |
3L | 7351269..7351413 | 485..629 | 100 | -> | Plus |
3L | 7351467..7351727 | 630..890 | 100 | -> | Plus |
3L | 7351795..7351897 | 891..993 | 100 | -> | Plus |
3L | 7351971..7352098 | 994..1121 | 100 | -> | Plus |
3L | 7352235..7352733 | 1122..1620 | 100 | -> | Plus |
3L | 7353343..7353622 | 1621..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7348347..7348675 | 1..329 | 100 | -> | Plus |
3L | 7348863..7349017 | 330..484 | 100 | -> | Plus |
3L | 7351269..7351413 | 485..629 | 100 | -> | Plus |
3L | 7351467..7351727 | 630..890 | 100 | -> | Plus |
3L | 7351795..7351897 | 891..993 | 100 | -> | Plus |
3L | 7351971..7352098 | 994..1121 | 100 | -> | Plus |
3L | 7352235..7352733 | 1122..1620 | 100 | -> | Plus |
3L | 7353343..7353622 | 1621..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7348347..7348675 | 1..329 | 100 | -> | Plus |
3L | 7348863..7349017 | 330..484 | 100 | -> | Plus |
3L | 7351269..7351413 | 485..629 | 100 | -> | Plus |
3L | 7351467..7351727 | 630..890 | 100 | -> | Plus |
3L | 7351795..7351897 | 891..993 | 100 | -> | Plus |
3L | 7351971..7352098 | 994..1121 | 100 | -> | Plus |
3L | 7352235..7352733 | 1122..1620 | 100 | -> | Plus |
3L | 7353343..7353622 | 1621..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7344895..7344997 | 891..993 | 100 | -> | Plus |
arm_3L | 7345071..7345198 | 994..1121 | 100 | -> | Plus |
arm_3L | 7344369..7344513 | 485..629 | 100 | -> | Plus |
arm_3L | 7341447..7341775 | 1..329 | 100 | -> | Plus |
arm_3L | 7341963..7342117 | 330..484 | 100 | -> | Plus |
arm_3L | 7344567..7344827 | 630..890 | 100 | -> | Plus |
arm_3L | 7345335..7345833 | 1122..1620 | 100 | -> | Plus |
arm_3L | 7346443..7346722 | 1621..1900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7341447..7341775 | 1..329 | 100 | -> | Plus |
3L | 7341963..7342117 | 330..484 | 100 | -> | Plus |
3L | 7344369..7344513 | 485..629 | 100 | -> | Plus |
3L | 7344567..7344827 | 630..890 | 100 | -> | Plus |
3L | 7344895..7344997 | 891..993 | 100 | -> | Plus |
3L | 7345071..7345198 | 994..1121 | 100 | -> | Plus |
3L | 7345335..7345833 | 1122..1620 | 100 | -> | Plus |
3L | 7346443..7346722 | 1621..1900 | 100 | Plus |
Translation from 263 to 1279
> RE65121.pep MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24684-PA | 338 | GF24684-PA | 1..338 | 1..338 | 1782 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14418-PA | 338 | GG14418-PA | 1..338 | 1..338 | 1797 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15381-PA | 337 | GH15381-PA | 1..337 | 1..338 | 1704 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
qm-PB | 338 | CG8593-PB | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PA | 338 | CG8593-PA | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PC | 326 | CG8593-PC | 1..326 | 1..338 | 1650 | 96.4 | Plus |
qless-PB | 436 | CG31005-PB | 182..424 | 57..299 | 158 | 24.7 | Plus |
qless-PA | 436 | CG31005-PA | 182..424 | 57..299 | 158 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12986-PA | 337 | GI12986-PA | 1..337 | 1..338 | 1701 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21354-PA | 339 | GL21354-PA | 1..339 | 1..338 | 1742 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21189-PA | 339 | GA21189-PA | 1..339 | 1..338 | 1742 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14833-PA | 338 | GM14833-PA | 1..338 | 1..338 | 1810 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14008-PA | 338 | GD14008-PA | 1..338 | 1..338 | 1810 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13129-PA | 337 | GJ13129-PA | 1..337 | 1..338 | 1738 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17525-PA | 361 | GK17525-PA | 1..361 | 1..338 | 1686 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21608-PA | 338 | GE21608-PA | 1..338 | 1..338 | 1799 | 98.8 | Plus |
Translation from 263 to 1279
> RE65121.hyp MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
qm-PB | 338 | CG8593-PB | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PA | 338 | CG8593-PA | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PC | 326 | CG8593-PC | 1..326 | 1..338 | 1650 | 96.4 | Plus |
qless-PB | 436 | CG31005-PB | 182..424 | 57..299 | 158 | 24.7 | Plus |
qless-PA | 436 | CG31005-PA | 182..424 | 57..299 | 158 | 24.7 | Plus |