Clone RE65121 Report

Search the DGRC for RE65121

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:651
Well:21
Vector:pFlc-1
Associated Gene/Transcriptqm-RA
Protein status:RE65121.pep: gold
Sequenced Size:1912

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8593 2001-12-17 Blastp of sequenced clone
CG8583 2002-01-01 Sim4 clustering to Release 2
CG8593 2003-01-01 Sim4 clustering to Release 3
qm 2008-04-29 Release 5.5 accounting
qm 2008-08-15 Release 5.9 accounting
qm 2008-12-18 5.12 accounting

Clone Sequence Records

RE65121.complete Sequence

1912 bp (1912 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071599

> RE65121.complete
AGTCTGTTTTTGGTCTTTCCGTGGTGTAATTGATTTGAGTTGTGCGGATA
ACGCGAAAAACCAATCGACGAGCGTCGGCCAGCAATTCTAGTCACGCGTG
TCGCGAAGCCAAGCGGTAAACAAAAAGCACGCCCCACACCGCAGTGACCC
CCCTCCATCAACACCAACACCACCACCCCCCGCGCTCTATCAAAACAACA
AAAGCACACACGCAAGGCCACGGCGGAGCAGCAACAAGAAAAACAACAAC
AACGGCGACAACAATGGAAGAACTGAACATCATATTACAGAAGACCAAAG
ATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTTACA
TACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTTGGC
CTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCGGAG
ACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATTGAA
GACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTACGG
CGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGCTGG
AGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACCGAA
CAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCGCGA
CAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGCGCA
AAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTCAGC
TCCAACAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTACTT
TCAGATACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGGAGA
ACAAGAGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCGGTA
ATCCATGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACATATT
ACGCCAGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCTTGT
TGGAAAAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCGCTC
GACGCAGAGGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTACAT
GGACCGCCTGCTCAACAAGCTGCTGTCGTGGAAGACGAGCGATAGCGCCA
GCATCACGCAGTCGAACCAGATCAATCACAACAACGTCTCACGCAGCAGC
CCCAACCAGAACACGCTCAATTGCAATTAGCAGCCAAAGAGGCAAAAGAG
GGAGCAGTCGTGAATTGCGAACGGCAGAGCCTCTTTTGCCGCCAATCCGG
GACAGCAGCAGGCCAGCAGCCAGCCGACGCCTGCGTGCCTCAGTGCGCCC
CTGTTGCGTTTCCTGCAGAAGCTGAAGATATTCTGAGATTTATGTTACCC
TTTGCCAAACCGAAAAGCCCACAGAGAACCCCTACCTTACTGTCAACCGA
AACCAGAGCGATGAGAACGGAAATAGGAGGAGGATAGGATTTGGATTTGA
TAGTGAATCGGATGAAATGGGATGGATAACAAAACCAACAGCAGCCTTAC
AGAAAATTGTTAAGCCAAAATTATACACATGAAAGAAACAAAAAGAAATA
AACGGCAAGAGAAACCGGAAAAATAACAAGAAAATTAACCAGATTGCTGA
AGTGGAAATGGAAAACTATAAACTATGCGAACATTTTACGGTAGAAACGA
CAACTAATAGCCGAGAATTTACAGTGCACGCCCAGATGCAGCTAAACGCA
AACGCACCTAACATTTTGCCCATATACTATATACTACTAATGAAAACATT
GAAATATATGTAAATGTATTTAAATAAATATTTATGCCAAGTTGTCAACT
AAAAAAAAAAAA

RE65121.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
quemao-RA 1972 quemao-RA 73..1972 1..1900 9500 100 Plus
quemao-RB 2587 quemao-RB 113..1732 1..1620 8100 100 Plus
quemao-RB 2587 quemao-RB 2342..2587 1621..1866 1230 100 Plus
CTCF-RA 3093 CTCF-RA 2981..3093 1903..1791 565 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7344360..7344860 1120..1620 2490 99.8 Plus
chr3L 24539361 chr3L 7340479..7340807 1..329 1645 100 Plus
chr3L 24539361 chr3L 7345466..7345745 1621..1900 1400 100 Plus
chr3L 24539361 chr3L 7343595..7343857 628..890 1270 98.9 Plus
chr3L 24539361 chr3L 7340993..7341149 328..484 770 99.4 Plus
chr3L 24539361 chr3L 7343399..7343544 485..630 730 100 Plus
chr3L 24539361 chr3L 7344101..7344230 994..1123 650 100 Plus
chr3L 24539361 chr3L 7343923..7344027 889..993 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7352233..7352733 1120..1620 2505 100 Plus
3L 28110227 3L 7348347..7348675 1..329 1645 100 Plus
3L 28110227 3L 7353343..7353625 1621..1903 1415 100 Plus
3L 28110227 3L 7351465..7351727 628..890 1315 100 Plus
3L 28110227 3L 7348861..7349017 328..484 785 100 Plus
3L 28110227 3L 7351269..7351414 485..630 730 100 Plus
3L 28110227 3L 7351971..7352100 994..1123 650 100 Plus
3L 28110227 3L 7351793..7351897 889..993 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7345333..7345833 1120..1620 2505 100 Plus
3L 28103327 3L 7341447..7341775 1..329 1645 100 Plus
3L 28103327 3L 7346443..7346725 1621..1903 1415 100 Plus
3L 28103327 3L 7344565..7344827 628..890 1315 100 Plus
3L 28103327 3L 7341961..7342117 328..484 785 100 Plus
3L 28103327 3L 7344369..7344514 485..630 730 100 Plus
3L 28103327 3L 7345071..7345200 994..1123 650 100 Plus
3L 28103327 3L 7344893..7344997 889..993 525 100 Plus
Blast to na_te.dros performed 2019-03-16 09:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1223..1316 151..253 116 62.1 Plus

RE65121.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:05:23 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7343399..7343543 485..629 100 -> Plus
chr3L 7343597..7343857 630..890 98 -> Plus
chr3L 7343925..7344027 891..993 100 -> Plus
chr3L 7344101..7344228 994..1121 100 -> Plus
chr3L 7340995..7341149 330..484 99 -> Plus
chr3L 7344362..7344860 1122..1620 99 -> Plus
chr3L 7345466..7345745 1621..1900 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:04 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 1..1017 264..1280 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:21 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RB 1..1017 264..1280 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:58:46 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 1..1017 264..1280 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:05 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 1..1017 264..1280 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:58:04 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 1..1017 264..1280 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:54 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 33..1932 1..1900 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:21 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 33..1932 1..1900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:58:46 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 35..1934 1..1900 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:05 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 33..1932 1..1900 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:58:04 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 35..1934 1..1900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:23 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7348347..7348675 1..329 100 -> Plus
3L 7348863..7349017 330..484 100 -> Plus
3L 7351269..7351413 485..629 100 -> Plus
3L 7351467..7351727 630..890 100 -> Plus
3L 7351795..7351897 891..993 100 -> Plus
3L 7351971..7352098 994..1121 100 -> Plus
3L 7352235..7352733 1122..1620 100 -> Plus
3L 7353343..7353622 1621..1900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:23 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7348347..7348675 1..329 100 -> Plus
3L 7348863..7349017 330..484 100 -> Plus
3L 7351269..7351413 485..629 100 -> Plus
3L 7351467..7351727 630..890 100 -> Plus
3L 7351795..7351897 891..993 100 -> Plus
3L 7351971..7352098 994..1121 100 -> Plus
3L 7352235..7352733 1122..1620 100 -> Plus
3L 7353343..7353622 1621..1900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:23 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7348347..7348675 1..329 100 -> Plus
3L 7348863..7349017 330..484 100 -> Plus
3L 7351269..7351413 485..629 100 -> Plus
3L 7351467..7351727 630..890 100 -> Plus
3L 7351795..7351897 891..993 100 -> Plus
3L 7351971..7352098 994..1121 100 -> Plus
3L 7352235..7352733 1122..1620 100 -> Plus
3L 7353343..7353622 1621..1900 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:58:46 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7344895..7344997 891..993 100 -> Plus
arm_3L 7345071..7345198 994..1121 100 -> Plus
arm_3L 7344369..7344513 485..629 100 -> Plus
arm_3L 7341447..7341775 1..329 100 -> Plus
arm_3L 7341963..7342117 330..484 100 -> Plus
arm_3L 7344567..7344827 630..890 100 -> Plus
arm_3L 7345335..7345833 1122..1620 100 -> Plus
arm_3L 7346443..7346722 1621..1900 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:15 Download gff for RE65121.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7341447..7341775 1..329 100 -> Plus
3L 7341963..7342117 330..484 100 -> Plus
3L 7344369..7344513 485..629 100 -> Plus
3L 7344567..7344827 630..890 100 -> Plus
3L 7344895..7344997 891..993 100 -> Plus
3L 7345071..7345198 994..1121 100 -> Plus
3L 7345335..7345833 1122..1620 100 -> Plus
3L 7346443..7346722 1621..1900 100   Plus

RE65121.pep Sequence

Translation from 263 to 1279

> RE65121.pep
MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW
LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST
INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC
PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD
DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT
HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL
NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCN*

RE65121.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24684-PA 338 GF24684-PA 1..338 1..338 1782 97.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14418-PA 338 GG14418-PA 1..338 1..338 1797 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15381-PA 337 GH15381-PA 1..337 1..338 1704 93.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
qm-PB 338 CG8593-PB 1..338 1..338 1732 100 Plus
qm-PA 338 CG8593-PA 1..338 1..338 1732 100 Plus
qm-PC 326 CG8593-PC 1..326 1..338 1650 96.4 Plus
qless-PB 436 CG31005-PB 182..424 57..299 158 24.7 Plus
qless-PA 436 CG31005-PA 182..424 57..299 158 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12986-PA 337 GI12986-PA 1..337 1..338 1701 93.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21354-PA 339 GL21354-PA 1..339 1..338 1742 95.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21189-PA 339 GA21189-PA 1..339 1..338 1742 95.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14833-PA 338 GM14833-PA 1..338 1..338 1810 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14008-PA 338 GD14008-PA 1..338 1..338 1810 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13129-PA 337 GJ13129-PA 1..337 1..338 1738 96.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17525-PA 361 GK17525-PA 1..361 1..338 1686 87.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21608-PA 338 GE21608-PA 1..338 1..338 1799 98.8 Plus

RE65121.hyp Sequence

Translation from 263 to 1279

> RE65121.hyp
MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW
LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST
INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC
PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD
DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT
HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL
NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCN*

RE65121.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
qm-PB 338 CG8593-PB 1..338 1..338 1732 100 Plus
qm-PA 338 CG8593-PA 1..338 1..338 1732 100 Plus
qm-PC 326 CG8593-PC 1..326 1..338 1650 96.4 Plus
qless-PB 436 CG31005-PB 182..424 57..299 158 24.7 Plus
qless-PA 436 CG31005-PA 182..424 57..299 158 24.7 Plus