Clone RE65147 Report

Search the DGRC for RE65147

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:651
Well:47
Vector:pFlc-1
Associated Gene/TranscriptCG11149-RC
Protein status:RE65147.pep: gold
Sequenced Size:1954

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11149 2008-04-29 Release 5.5 accounting
CG11149 2008-08-15 Release 5.9 accounting
CG11149 2008-12-18 5.12 accounting

Clone Sequence Records

RE65147.complete Sequence

1954 bp (1954 high quality bases) assembled on 2006-08-24

GenBank Submission: BT028805

> RE65147.complete
AGTCTGTTTCCATTATTCATCGCCGAATGTTGTCTGTCTCGTTCGTGAAA
TAACTTTTAATCTTAACAGAAAAAAATCCCTCAAACAATTTGCGTCGTTT
CGTACGTCATAAAATGGGTTAATCTTTAATGTGCAAACTCTTGTCGATGG
AAATGAAAGTGTCAGCCGGTCAATAAGTTCTTTGTGTTCTGTTAGTTAAG
GAGTTCCTGTGAATCAATGTTCTCGAAATCAGCATGGCGACCATAAGTTT
TTGCAATAGGAAATATGTCCGTCTGTGGCCAGTGCTCATACTGTTCAATG
TGGCACTCCTGCTGGTTTGGAGGAACCTGCAGCAGGCCCAGAAACTGGCC
GCATCTTCTAATACTGGTGGGCAAAAGTCGGTAGGACTTTTGCTGTCCAA
CGAGTCGAATCCCTCACGTTTTTCTGCAAACTTCCATCTCGCCAATGATC
AGCATCCGAAAATAATCCGGCGAGAGGACTCCGCTCGCACCAAGGAATTG
CGATCATTGCTCAAGTGCCGCGACCGATCGCTCCGTTTCGAGAGGCTTCA
GCACGGAGAGTTCTGGCTGCTTCAGAATCTTGTCATGGGACGAAAGAGTC
GGGAAGTCGGCTGTGCCGAGTCCGTGACGTATACCACCAACGGGGACTTT
ACGTTCTTCGATAATCTGGAAATGGTGGTATCACGTTGGCGTGCTCCAGT
TAGTTTTGCCATCCACACTCCAGGTTATGATCTTAACACCACACTGGATG
CCATTCGGTATGTGCGAAACTGTTTGCCGGAGAGCGATAGCATCAAGGAC
TGGGTCTCCTTTCACGTGTACTTCCCAAATCAGCACATGCCGGAATACGT
GCCATATGACGAGGCCGAGGTACTAATGTATCCGCACATGTGCACCCTGG
CCAATGGATCGTTGGTATCGCCGCTCTACACGCAAATCCCAACCACGGAT
AGCTACAAGTCAAGGGCCAACCTCACGTACCCCATCAATGTGGGCAGGAA
TATAGCCAGGCTGGCGACCAACACCCACTTCATCTTTGCCTGCGACATCG
AGCTGTATCCCAGTGTGGGCTTCGTCGACCAATTCCTGGACATGGTGGCC
AGAAACCACAGTGTCCTTGCACTGGATCCGCGGCAACGCAGAAGGGTGTA
TCCTCTACCCGTTTTCGAGATCGAAACGGGCGCCAAAGTGCCGGTAGACA
AGGACGAATTGTTGGCCCTCTATCGAAAGCAGCAGGCGCAGGTGTTTCAC
CTGAAGCTTTGCCCCACATGCCACACTATTCCTGGCCAAGAAGAGTGGCT
CAATCGAACCTCTCGAGCCGATGACCATCTGCACGTGTTTAGCAAGGCGC
TGCGAAAATGGAAGTTCCGAGCCTGGGAGCCCTTCTATGTAAGCGATAAC
ACGGAGCCACTGTTCGACGAACGCGTCACGTGGGAGGGTCAGTCGAACAA
GCGCATACAGAACTATGCTATGTGCCTTTTGGACTACGAATACCATGTCT
TGAGTCCCGCATTTCTAGTGCACAGTCCTGGGATCAAGCAATCCAGCAAA
GCTGACTCCACTCGTCTTCAATACGCGAAGGAAATGACTAAATTTATTAA
GAATAAAATCGAGCCCGAATATCGTGTGCTCTTCGGAAAGAACTCAGCCT
GCAAGACGTGACATTACTTTGATAATATAACAAATAATGTAATTAATGAA
TTTATGCCCCATCTAAGTTATGCCTTTATAGGAAAAAGAGTCTATTCTTT
TTACTACTTAAACCGAGTAGTATGTATATTTTGAACTTAATGCTCACTGC
TTGCTATTCATCAATGTGAAAATATATTATATTTTATACAATTAGATAAT
AAGACCTAATGGATACAATTCCCTATACCTTGGGAAACTGATTGCTCCGC
TGTTTCATGTAGTACAATATATAGAACATAAATTTTAAACTAAAAAAAAA
AAAA

RE65147.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11149-RC 1941 CG11149-RC 1..1939 1..1939 9695 100 Plus
CG11149-RA 1995 CG11149-RA 1..1460 1..1460 7300 100 Plus
CG11149-RB 1949 CG11149-RB 122..1414 168..1460 6465 100 Plus
CG11149-RA 1995 CG11149-RA 1512..1993 1458..1939 2410 100 Plus
CG11149-RB 1949 CG11149-RB 1466..1947 1458..1939 2410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5717764..5718539 1460..685 3880 100 Minus
chr2L 23010047 chr2L 5718619..5719136 685..168 2590 100 Minus
chr2L 23010047 chr2L 5717231..5717712 1939..1458 2410 100 Minus
chr2L 23010047 chr2L 5719479..5719648 170..1 850 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5718656..5719431 1460..685 3880 100 Minus
2L 23513712 2L 5719511..5720028 685..168 2590 100 Minus
2L 23513712 2L 5718118..5718604 1944..1458 2420 99.8 Minus
2L 23513712 2L 5720371..5720540 170..1 850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5718656..5719431 1460..685 3880 100 Minus
2L 23513712 2L 5719511..5720028 685..168 2590 100 Minus
2L 23513712 2L 5718118..5718604 1944..1458 2420 99.7 Minus
2L 23513712 2L 5720371..5720540 170..1 850 100 Minus
Blast to na_te.dros performed 2019-03-16 00:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2505..2632 1659..1794 120 58.8 Plus

RE65147.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:37:21 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5717244..5717709 1461..1926 100 <- Minus
chr2L 5717764..5718538 686..1460 100 <- Minus
chr2L 5718619..5719135 169..685 100 <- Minus
chr2L 5719481..5719648 1..168 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:07 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RA 1..1227 234..1460 100 -> Plus
CG11149-RA 1282..1482 1461..1661 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:28:13 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RC 1..1428 234..1661 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:55:07 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RC 1..1428 234..1661 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:51:58 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RA 1..1227 234..1460 100 -> Plus
CG11149-RA 1282..1482 1461..1661 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:07:22 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RC 1..1428 234..1661 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:59:22 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RA 1515..1994 1461..1941 99   Plus
CG11149-RA 1..1460 1..1460 100 -> Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:28:13 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RC 1..1940 1..1941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:55:07 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RC 1..1940 1..1941 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:51:58 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RA 1..1460 1..1460 100 -> Plus
CG11149-RA 1515..1994 1461..1941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:07:22 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11149-RC 1..1940 1..1941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:21 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5720373..5720540 1..168 100   Minus
2L 5718121..5718601 1461..1941 99 <- Minus
2L 5718656..5719430 686..1460 100 <- Minus
2L 5719511..5720027 169..685 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:21 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5720373..5720540 1..168 100   Minus
2L 5718121..5718601 1461..1941 99 <- Minus
2L 5718656..5719430 686..1460 100 <- Minus
2L 5719511..5720027 169..685 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:37:21 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5720373..5720540 1..168 100   Minus
2L 5718121..5718601 1461..1941 99 <- Minus
2L 5718656..5719430 686..1460 100 <- Minus
2L 5719511..5720027 169..685 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:55:07 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5720373..5720540 1..168 100   Minus
arm_2L 5718121..5718601 1461..1941 99 <- Minus
arm_2L 5718656..5719430 686..1460 100 <- Minus
arm_2L 5719511..5720027 169..685 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:54:32 Download gff for RE65147.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5718121..5718601 1461..1941 99 <- Minus
2L 5718656..5719430 686..1460 100 <- Minus
2L 5719511..5720027 169..685 100 <- Minus
2L 5720373..5720540 1..168 100   Minus

RE65147.pep Sequence

Translation from 233 to 1660

> RE65147.pep
MATISFCNRKYVRLWPVLILFNVALLLVWRNLQQAQKLAASSNTGGQKSV
GLLLSNESNPSRFSANFHLANDQHPKIIRREDSARTKELRSLLKCRDRSL
RFERLQHGEFWLLQNLVMGRKSREVGCAESVTYTTNGDFTFFDNLEMVVS
RWRAPVSFAIHTPGYDLNTTLDAIRYVRNCLPESDSIKDWVSFHVYFPNQ
HMPEYVPYDEAEVLMYPHMCTLANGSLVSPLYTQIPTTDSYKSRANLTYP
INVGRNIARLATNTHFIFACDIELYPSVGFVDQFLDMVARNHSVLALDPR
QRRRVYPLPVFEIETGAKVPVDKDELLALYRKQQAQVFHLKLCPTCHTIP
GQEEWLNRTSRADDHLHVFSKALRKWKFRAWEPFYVSDNTEPLFDERVTW
EGQSNKRIQNYAMCLLDYEYHVLSPAFLVHSPGIKQSSKADSTRLQYAKE
MTKFIKNKIEPEYRVLFGKNSACKT*

RE65147.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14309-PA 398 GF14309-PA 2..395 3..409 1363 63.7 Plus
Dana\GF14302-PA 574 GF14302-PA 190..572 77..473 887 42.8 Plus
Dana\GF15654-PA 411 GF15654-PA 34..409 87..473 704 36.4 Plus
Dana\GF11373-PA 377 GF11373-PA 5..324 97..430 235 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24286-PA 470 GG24286-PA 1..470 1..475 2152 85.1 Plus
Dere\GG24282-PA 548 GG24282-PA 164..546 77..473 880 42.3 Plus
Dere\GG10238-PA 407 GG10238-PA 30..405 88..473 717 37.5 Plus
Dere\GG22943-PA 389 GG22943-PA 20..336 100..430 216 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10695-PA 449 GH10695-PA 53..449 73..475 1433 65 Plus
Dgri\GH10688-PA 542 GH10688-PA 158..540 77..473 857 41.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11149-PE 475 CG11149-PE 1..475 1..475 2528 100 Plus
CG11149-PD 475 CG11149-PD 1..475 1..475 2528 100 Plus
CG11149-PC 475 CG11149-PC 1..475 1..475 2528 100 Plus
CG11149-PA 493 CG11149-PA 1..493 1..475 2499 96.3 Plus
CG11149-PB 493 CG11149-PB 1..493 1..475 2499 96.3 Plus
CG9171-PG 544 CG9171-PG 160..542 77..473 858 42.1 Plus
CG9171-PF 544 CG9171-PF 160..542 77..473 858 42.1 Plus
CG9171-PE 544 CG9171-PE 160..542 77..473 858 42.1 Plus
CG9171-PD 544 CG9171-PD 160..542 77..473 858 42.1 Plus
CG9171-PC 544 CG9171-PC 160..542 77..473 858 42.1 Plus
CG15483-PA 407 CG15483-PA 30..405 88..473 691 36.3 Plus
CG3253-PB 389 CG3253-PB 64..336 143..430 207 27.1 Plus
CG3253-PA 389 CG3253-PA 64..336 143..430 207 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11232-PA 458 GI11232-PA 23..458 28..475 1469 61.7 Plus
Dmoj\GI11204-PA 532 GI11204-PA 116..530 53..473 874 40.3 Plus
Dmoj\GI21341-PA 390 GI21341-PA 20..388 89..473 756 40 Plus
Dmoj\GI18863-PA 385 GI18863-PA 43..341 117..430 273 28.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26639-PA 471 GL26639-PA 3..471 10..475 1566 63.3 Plus
Dper\GL19727-PA 637 GL19727-PA 257..635 88..473 680 36.9 Plus
Dper\GL19115-PA 240 GL19115-PA 68..238 300..473 379 39.7 Plus
Dper\GL26378-PA 643 GL26378-PA 268..576 106..429 314 28.4 Plus
Dper\GL26376-PA 415 GL26376-PA 57..374 106..438 221 24.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10796-PA 471 GA10796-PA 3..471 10..475 1562 62.8 Plus
Dpse\GA21591-PA 561 GA21591-PA 163..559 64..473 877 42.6 Plus
Dpse\GA13763-PA 411 GA13763-PA 31..409 88..473 698 37.9 Plus
Dpse\GA28839-PA 673 GA28839-PA 298..606 106..429 304 28.1 Plus
Dpse\GA16964-PA 506 GA16964-PA 43..341 117..430 220 25.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18003-PA 339 GM18003-PA 1..279 1..280 1287 89.3 Plus
Dsec\GM25976-PA 407 GM25976-PA 24..405 82..473 699 36.5 Plus
Dsec\GM18004-PA 63 GM18004-PA 1..63 413..475 318 92.1 Plus
Dsec\GM17997-PA 339 GM17997-PA 246..337 381..473 246 43 Plus
Dsec\GM18308-PA 408 GM18308-PA 184..355 248..430 202 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14937-PA 335 GD14937-PA 1..335 141..475 1701 92.8 Plus
Dsim\GD22631-PA 544 GD22631-PA 160..542 77..473 874 41.8 Plus
Dsim\GD22637-PA 164 GD22637-PA 1..151 1..151 662 89.4 Plus
Dsim\GD22096-PA 335 GD22096-PA 20..330 82..401 538 34.5 Plus
Dsim\GD15463-PA 389 GD15463-PA 20..336 100..430 217 26 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12303-PA 461 GJ12303-PA 25..461 30..475 1506 62.5 Plus
Dvir\GJ18327-PA 547 GJ18327-PA 163..545 77..473 858 41.3 Plus
Dvir\GJ11128-PA 396 GJ11128-PA 18..394 81..473 678 35.1 Plus
Dvir\GJ20432-PA 208 GJ20432-PA 2..166 255..430 188 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15424-PA 482 GK15424-PA 2..482 4..475 1634 63.6 Plus
Dwil\GK15419-PA 551 GK15419-PA 143..549 44..473 891 41.9 Plus
Dwil\GK21937-PA 378 GK21937-PA 31..330 117..430 252 27 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18982-PA 469 GE18982-PA 1..469 1..475 2153 85.7 Plus
Dyak\GE18978-PA 549 GE18978-PA 149..547 63..473 874 41.4 Plus
Dyak\GE12044-PA 407 GE12044-PA 24..405 82..473 714 36.5 Plus
Dyak\GE14380-PA 389 GE14380-PA 20..336 100..430 209 25.4 Plus

RE65147.hyp Sequence

Translation from 233 to 1660

> RE65147.hyp
MATISFCNRKYVRLWPVLILFNVALLLVWRNLQQAQKLAASSNTGGQKSV
GLLLSNESNPSRFSANFHLANDQHPKIIRREDSARTKELRSLLKCRDRSL
RFERLQHGEFWLLQNLVMGRKSREVGCAESVTYTTNGDFTFFDNLEMVVS
RWRAPVSFAIHTPGYDLNTTLDAIRYVRNCLPESDSIKDWVSFHVYFPNQ
HMPEYVPYDEAEVLMYPHMCTLANGSLVSPLYTQIPTTDSYKSRANLTYP
INVGRNIARLATNTHFIFACDIELYPSVGFVDQFLDMVARNHSVLALDPR
QRRRVYPLPVFEIETGAKVPVDKDELLALYRKQQAQVFHLKLCPTCHTIP
GQEEWLNRTSRADDHLHVFSKALRKWKFRAWEPFYVSDNTEPLFDERVTW
EGQSNKRIQNYAMCLLDYEYHVLSPAFLVHSPGIKQSSKADSTRLQYAKE
MTKFIKNKIEPEYRVLFGKNSACKT*

RE65147.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11149-PE 475 CG11149-PE 1..475 1..475 2528 100 Plus
CG11149-PD 475 CG11149-PD 1..475 1..475 2528 100 Plus
CG11149-PC 475 CG11149-PC 1..475 1..475 2528 100 Plus
CG11149-PA 493 CG11149-PA 1..493 1..475 2499 96.3 Plus
CG11149-PB 493 CG11149-PB 1..493 1..475 2499 96.3 Plus