Clone RE65180 Report

Search the DGRC for RE65180

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:651
Well:80
Vector:pFlc-1
Associated Gene/TranscriptJupiter-RC
Protein status:RE65180.pep: gold
Sequenced Size:1597

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31363 2003-02-13 Blastp of sequenced clone
Jupiter 2008-04-29 Release 5.5 accounting
Jupiter 2008-08-15 Release 5.9 accounting
Jupiter 2008-12-18 5.12 accounting

Clone Sequence Records

RE65180.complete Sequence

1597 bp (1597 high quality bases) assembled on 2003-02-13

GenBank Submission: BT006004

> RE65180.complete
ACTTTAGTCGCCAGACATTTATCGAAACGTGCACATCACCAGCGGTCGCA
CACTCAAACATATTGCATATATATATATATATATATATATTGCTATCCCA
ACAAAATATCCTTCGAATCGAAAAAAACCCACGCGAGTGCAAATCAAAAG
TTTTTTAGCTTTCTTTAGAGATTATCCTTTCGCCAAACAAATAGAAACAG
AAATGGCCGCCTACGCTGCTTTCAAACACGTTGAGCTTTACAATGTTGGC
AAAGCAAAGAAGAGGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACAT
CTTTGGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGG
CGTCCAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGT
GATGCACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTT
TGGGGAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCA
GCATTCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTG
ACCACCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTC
GTCTTCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGA
GATCAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGTCGTAGCCAAC
GAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGCACTCCGGTGATCAA
CAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGGCCTGTGGTAATGAC
AGCCGGAATTGCTCAGATCCCAGCACAAGCAATTGAGGAGCCGATGGCGG
GACGAGACACTATAAGAAAAAAAAAAAACCAACAAAACAAGCAAAAAAAA
TCATACTACCCATCTAATATACGCATAAAACCCTACACTCCCGTATCCAG
GTCAGAAAATCGAAAGGCACGAAAGTAGGACATGATGGCCAACGAATAAT
TAAGCGAGAGAATAGCAATTGCTCAACGATCTGCAGATGCAATAGTACGA
TACGCTTCCCAGATGAGAATTAATCAACCAATTTTAGAAGGCGGCGTTGC
ACCCAAACCTATCACTACCAACACCACCACCACCCCATTGCAAATCTGTA
ATTTAAATTCCTTAGTTGGTGTAAATCCATGTAACGCGTGTAGCCCCACA
AAACGACGCCCGATCGCCTGCCCTCTGCAACTGCAGATATATTATATATA
TGATATTCATCAACCCGGTGTGTGCTTACGTGTGAATCAAGCGAGAAGCA
AGGATGCGAGCGGTGGCGGCCTGTTGGAGTCCTTTGATCACACATGGATT
TTATTTTAGTTGCTACTACACGCCACATATATTTATATTTATACCAACTG
CATTCACACGAACACTCACGAAAACACATACATACATACATTATAAACAT
TGTATTACATTACATTAAATATGTAATTTAAACGGTACGACAGCACTTTC
TAATGTGCACGTGCTAATTAAGTGTAAAAATACAAAATTCAAGCGCGAAT
ATTTGTTCAATAAAAACCTTTCGTACATAAGAAAAAAAAAAAAAAAA

RE65180.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-RC 1800 Jupiter-RC 54..1633 1..1580 7885 99.9 Plus
Jupiter.a 1844 Jupiter.a 264..1677 167..1580 7055 99.9 Plus
Jupiter.c 1616 Jupiter.c 431..1613 398..1580 5900 99.9 Plus
Jupiter.c 1616 Jupiter.c 1..398 1..398 1990 100 Plus
Jupiter.a 1844 Jupiter.a 54..220 1..167 835 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7415875..7416801 1580..654 4620 99.9 Minus
chr3R 27901430 chr3R 7417858..7418116 656..398 1295 100 Minus
chr3R 27901430 chr3R 7430088..7430253 166..1 830 100 Minus
chr3R 27901430 chr3R 7419122..7419259 400..263 690 100 Minus
chr3R 27901430 chr3R 7429643..7429741 265..167 495 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11590384..11591310 1580..654 4620 99.9 Minus
3R 32079331 3R 11592367..11592625 656..398 1295 100 Minus
3R 32079331 3R 11604586..11604751 166..1 830 100 Minus
3R 32079331 3R 11593631..11593768 400..263 690 100 Minus
3R 32079331 3R 11604141..11604239 265..167 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11331215..11332141 1580..654 4620 99.8 Minus
3R 31820162 3R 11333198..11333456 656..398 1295 100 Minus
3R 31820162 3R 11345417..11345582 166..1 830 100 Minus
3R 31820162 3R 11334462..11334599 400..263 690 100 Minus
3R 31820162 3R 11344972..11345070 265..167 495 100 Minus
Blast to na_te.dros performed 2019-03-16 19:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1160..1255 1040..1137 124 62.6 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1662..1701 1428..1468 112 78 Plus

RE65180.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:33:04 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7415874..7416798 657..1581 99 <- Minus
chr3R 7417858..7418115 399..656 100 <- Minus
chr3R 7419124..7419257 265..398 100 <- Minus
chr3R 7429644..7429741 167..264 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:49:33 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..594 203..796 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:21 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..594 203..796 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:42 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..594 203..796 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:29 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..594 203..796 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:08 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..594 203..796 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:32 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..1576 1..1576 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:21 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..1578 1..1578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:42 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 4..1581 1..1578 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:29 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 1..1576 1..1576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:08 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
Jupiter-RC 4..1581 1..1578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:04 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11604586..11604751 1..166 100   Minus
3R 11590383..11591307 657..1581 99 <- Minus
3R 11592367..11592624 399..656 100 <- Minus
3R 11593633..11593766 265..398 100 <- Minus
3R 11604142..11604239 167..264 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:04 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11604586..11604751 1..166 100   Minus
3R 11590383..11591307 657..1581 99 <- Minus
3R 11592367..11592624 399..656 100 <- Minus
3R 11593633..11593766 265..398 100 <- Minus
3R 11604142..11604239 167..264 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:04 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11604586..11604751 1..166 100   Minus
3R 11590383..11591307 657..1581 99 <- Minus
3R 11592367..11592624 399..656 100 <- Minus
3R 11593633..11593766 265..398 100 <- Minus
3R 11604142..11604239 167..264 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:42 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7418089..7418346 399..656 100 <- Minus
arm_3R 7419355..7419488 265..398 100 <- Minus
arm_3R 7429864..7429961 167..264 100 <- Minus
arm_3R 7430308..7430473 1..166 100   Minus
arm_3R 7416105..7417029 657..1581 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:13 Download gff for RE65180.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11333198..11333455 399..656 100 <- Minus
3R 11331214..11332138 657..1581 99 <- Minus
3R 11334464..11334597 265..398 100 <- Minus
3R 11344973..11345070 167..264 100 <- Minus
3R 11345417..11345582 1..166 100   Minus

RE65180.hyp Sequence

Translation from 202 to 795

> RE65180.hyp
MAAYAAFKHVELYNVGKAKKRVLRPPGGGSSDIFGSEMPQTPRNVKNRMA
SNIFAAEKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSS
IPFGQNTEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSR
SEGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*

RE65180.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-PC 197 CG31363-PC 1..197 1..197 1025 100 Plus
Jupiter-PE 208 CG31363-PE 1..208 1..197 1003 94.7 Plus
Jupiter-PD 191 CG31363-PD 11..191 17..197 925 97.8 Plus
Jupiter-PA 197 CG31363-PA 11..197 17..197 904 94.1 Plus
Jupiter-PH 202 CG31363-PH 11..202 17..197 903 92.2 Plus

RE65180.pep Sequence

Translation from 202 to 795

> RE65180.pep
MAAYAAFKHVELYNVGKAKKRVLRPPGGGSSDIFGSEMPQTPRNVKNRMA
SNIFAAEKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSS
IPFGQNTEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSR
SEGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*

RE65180.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16635-PA 354 GF16635-PA 1..163 1..150 639 89 Plus
Dana\GF16635-PA 354 GF16635-PA 300..354 143..197 204 69.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17211-PA 345 GG17211-PA 11..157 17..151 574 88.4 Plus
Dere\GG17211-PA 345 GG17211-PA 300..345 152..197 218 87 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17288-PA 207 GH17288-PA 1..207 1..197 730 77.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Jupiter-PC 197 CG31363-PC 1..197 1..197 1025 100 Plus
Jupiter-PE 208 CG31363-PE 1..208 1..197 1003 94.7 Plus
Jupiter-PD 191 CG31363-PD 11..191 17..197 925 97.8 Plus
Jupiter-PA 197 CG31363-PA 11..197 17..197 904 94.1 Plus
Jupiter-PH 202 CG31363-PH 11..202 17..197 903 92.2 Plus
Jupiter-PI 105 CG31363-PI 52..105 144..197 256 88.9 Plus
Jupiter-PB 185 CG31363-PB 140..185 152..197 250 100 Plus
Jupiter-PI 105 CG31363-PI 11..98 17..104 244 63.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23754-PA 203 GI23754-PA 1..203 1..197 647 71.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12395-PA 361 GL12395-PA 11..166 17..151 497 77.6 Plus
Dper\GL12395-PA 361 GL12395-PA 307..361 152..197 146 54.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27493-PE 159 GA27493-PE 1..69 1..69 331 88.4 Plus
Dpse\GA27493-PF 170 GA27493-PF 1..64 1..64 320 92.2 Plus
Dpse\GA27493-PD 160 GA27493-PD 5..63 13..69 225 71.2 Plus
Dpse\GA27493-PB 153 GA27493-PB 5..63 13..69 223 71.2 Plus
Dpse\GA27493-PC 164 GA27493-PC 5..58 13..64 213 74.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26090-PA 315 GM26090-PA 11..145 17..151 676 97 Plus
Dsec\GM26090-PA 315 GM26090-PA 272..315 152..197 214 87 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20653-PA 168 GD20653-PA 11..156 17..151 590 89.7 Plus
Dsim\GD15110-PA 183 GD15110-PA 140..183 152..197 214 87 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10600-PA 205 GJ10600-PA 1..205 1..197 648 72.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11035-PA 368 GK11035-PA 1..169 1..151 583 79.3 Plus
Dwil\GK11035-PA 368 GK11035-PA 324..368 152..197 149 65.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10105-PA 347 GE10105-PA 11..157 17..151 568 87.8 Plus
Dyak\GE10105-PA 347 GE10105-PA 302..347 152..197 210 82.6 Plus