BDGP Sequence Production Resources |
Search the DGRC for RE65180
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 651 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Jupiter-RC |
Protein status: | RE65180.pep: gold |
Sequenced Size: | 1597 |
Gene | Date | Evidence |
---|---|---|
CG31363 | 2003-02-13 | Blastp of sequenced clone |
Jupiter | 2008-04-29 | Release 5.5 accounting |
Jupiter | 2008-08-15 | Release 5.9 accounting |
Jupiter | 2008-12-18 | 5.12 accounting |
1597 bp (1597 high quality bases) assembled on 2003-02-13
GenBank Submission: BT006004
> RE65180.complete ACTTTAGTCGCCAGACATTTATCGAAACGTGCACATCACCAGCGGTCGCA CACTCAAACATATTGCATATATATATATATATATATATATTGCTATCCCA ACAAAATATCCTTCGAATCGAAAAAAACCCACGCGAGTGCAAATCAAAAG TTTTTTAGCTTTCTTTAGAGATTATCCTTTCGCCAAACAAATAGAAACAG AAATGGCCGCCTACGCTGCTTTCAAACACGTTGAGCTTTACAATGTTGGC AAAGCAAAGAAGAGGGTGCTGAGGCCCCCGGGCGGCGGATCGAGCGACAT CTTTGGATCGGAGATGCCGCAGACCCCCAGGAACGTGAAGAATCGCATGG CGTCCAACATATTCGCTGCCGAGAAAGATAATGGAGTGAAAAACAACGGT GATGCACCACGTCGCGGCCAGAAGACCGTCGACTCCCACTCTCGGCTGTT TGGGGAGCCCACCCGCCCGATCACCCCCGGCAAGAACCACATGAAGAGCA GCATTCCCTTTGGTCAGAACACAGAGGCCGTTGCCGCCCAGAAGCTGCTG ACCACCAATGGCCACTACAACGGCAAGAGCGGATCGGTGTCCTCGGCCTC GTCTTCGGTGTCGTCCTCCACCGAGAACCTCAAGATGAACAGTGGCTCGA GATCAGAGGGCAACCCCGTCACAGGCGAGGGCTACAAGGTCGTAGCCAAC GAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGCACTCCGGTGATCAA CAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGGCCTGTGGTAATGAC AGCCGGAATTGCTCAGATCCCAGCACAAGCAATTGAGGAGCCGATGGCGG GACGAGACACTATAAGAAAAAAAAAAAACCAACAAAACAAGCAAAAAAAA TCATACTACCCATCTAATATACGCATAAAACCCTACACTCCCGTATCCAG GTCAGAAAATCGAAAGGCACGAAAGTAGGACATGATGGCCAACGAATAAT TAAGCGAGAGAATAGCAATTGCTCAACGATCTGCAGATGCAATAGTACGA TACGCTTCCCAGATGAGAATTAATCAACCAATTTTAGAAGGCGGCGTTGC ACCCAAACCTATCACTACCAACACCACCACCACCCCATTGCAAATCTGTA ATTTAAATTCCTTAGTTGGTGTAAATCCATGTAACGCGTGTAGCCCCACA AAACGACGCCCGATCGCCTGCCCTCTGCAACTGCAGATATATTATATATA TGATATTCATCAACCCGGTGTGTGCTTACGTGTGAATCAAGCGAGAAGCA AGGATGCGAGCGGTGGCGGCCTGTTGGAGTCCTTTGATCACACATGGATT TTATTTTAGTTGCTACTACACGCCACATATATTTATATTTATACCAACTG CATTCACACGAACACTCACGAAAACACATACATACATACATTATAAACAT TGTATTACATTACATTAAATATGTAATTTAAACGGTACGACAGCACTTTC TAATGTGCACGTGCTAATTAAGTGTAAAAATACAAAATTCAAGCGCGAAT ATTTGTTCAATAAAAACCTTTCGTACATAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Jupiter-RC | 1800 | Jupiter-RC | 54..1633 | 1..1580 | 7885 | 99.9 | Plus |
Jupiter.a | 1844 | Jupiter.a | 264..1677 | 167..1580 | 7055 | 99.9 | Plus |
Jupiter.c | 1616 | Jupiter.c | 431..1613 | 398..1580 | 5900 | 99.9 | Plus |
Jupiter.c | 1616 | Jupiter.c | 1..398 | 1..398 | 1990 | 100 | Plus |
Jupiter.a | 1844 | Jupiter.a | 54..220 | 1..167 | 835 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7415875..7416801 | 1580..654 | 4620 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 7417858..7418116 | 656..398 | 1295 | 100 | Minus |
chr3R | 27901430 | chr3R | 7430088..7430253 | 166..1 | 830 | 100 | Minus |
chr3R | 27901430 | chr3R | 7419122..7419259 | 400..263 | 690 | 100 | Minus |
chr3R | 27901430 | chr3R | 7429643..7429741 | 265..167 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 11590384..11591310 | 1580..654 | 4620 | 99.9 | Minus |
3R | 32079331 | 3R | 11592367..11592625 | 656..398 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 11604586..11604751 | 166..1 | 830 | 100 | Minus |
3R | 32079331 | 3R | 11593631..11593768 | 400..263 | 690 | 100 | Minus |
3R | 32079331 | 3R | 11604141..11604239 | 265..167 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11331215..11332141 | 1580..654 | 4620 | 99.8 | Minus |
3R | 31820162 | 3R | 11333198..11333456 | 656..398 | 1295 | 100 | Minus |
3R | 31820162 | 3R | 11345417..11345582 | 166..1 | 830 | 100 | Minus |
3R | 31820162 | 3R | 11334462..11334599 | 400..263 | 690 | 100 | Minus |
3R | 31820162 | 3R | 11344972..11345070 | 265..167 | 495 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1160..1255 | 1040..1137 | 124 | 62.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1662..1701 | 1428..1468 | 112 | 78 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7415874..7416798 | 657..1581 | 99 | <- | Minus |
chr3R | 7417858..7418115 | 399..656 | 100 | <- | Minus |
chr3R | 7419124..7419257 | 265..398 | 100 | <- | Minus |
chr3R | 7429644..7429741 | 167..264 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..594 | 203..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..594 | 203..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..594 | 203..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..594 | 203..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..594 | 203..796 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..1576 | 1..1576 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..1578 | 1..1578 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 4..1581 | 1..1578 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 1..1576 | 1..1576 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Jupiter-RC | 4..1581 | 1..1578 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11604586..11604751 | 1..166 | 100 | Minus | |
3R | 11590383..11591307 | 657..1581 | 99 | <- | Minus |
3R | 11592367..11592624 | 399..656 | 100 | <- | Minus |
3R | 11593633..11593766 | 265..398 | 100 | <- | Minus |
3R | 11604142..11604239 | 167..264 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11604586..11604751 | 1..166 | 100 | Minus | |
3R | 11590383..11591307 | 657..1581 | 99 | <- | Minus |
3R | 11592367..11592624 | 399..656 | 100 | <- | Minus |
3R | 11593633..11593766 | 265..398 | 100 | <- | Minus |
3R | 11604142..11604239 | 167..264 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11604586..11604751 | 1..166 | 100 | Minus | |
3R | 11590383..11591307 | 657..1581 | 99 | <- | Minus |
3R | 11592367..11592624 | 399..656 | 100 | <- | Minus |
3R | 11593633..11593766 | 265..398 | 100 | <- | Minus |
3R | 11604142..11604239 | 167..264 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7418089..7418346 | 399..656 | 100 | <- | Minus |
arm_3R | 7419355..7419488 | 265..398 | 100 | <- | Minus |
arm_3R | 7429864..7429961 | 167..264 | 100 | <- | Minus |
arm_3R | 7430308..7430473 | 1..166 | 100 | Minus | |
arm_3R | 7416105..7417029 | 657..1581 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11333198..11333455 | 399..656 | 100 | <- | Minus |
3R | 11331214..11332138 | 657..1581 | 99 | <- | Minus |
3R | 11334464..11334597 | 265..398 | 100 | <- | Minus |
3R | 11344973..11345070 | 167..264 | 100 | <- | Minus |
3R | 11345417..11345582 | 1..166 | 100 | Minus |
Translation from 202 to 795
> RE65180.hyp MAAYAAFKHVELYNVGKAKKRVLRPPGGGSSDIFGSEMPQTPRNVKNRMA SNIFAAEKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSS IPFGQNTEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSR SEGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Jupiter-PC | 197 | CG31363-PC | 1..197 | 1..197 | 1025 | 100 | Plus |
Jupiter-PE | 208 | CG31363-PE | 1..208 | 1..197 | 1003 | 94.7 | Plus |
Jupiter-PD | 191 | CG31363-PD | 11..191 | 17..197 | 925 | 97.8 | Plus |
Jupiter-PA | 197 | CG31363-PA | 11..197 | 17..197 | 904 | 94.1 | Plus |
Jupiter-PH | 202 | CG31363-PH | 11..202 | 17..197 | 903 | 92.2 | Plus |
Translation from 202 to 795
> RE65180.pep MAAYAAFKHVELYNVGKAKKRVLRPPGGGSSDIFGSEMPQTPRNVKNRMA SNIFAAEKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSS IPFGQNTEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSR SEGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16635-PA | 354 | GF16635-PA | 1..163 | 1..150 | 639 | 89 | Plus |
Dana\GF16635-PA | 354 | GF16635-PA | 300..354 | 143..197 | 204 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17211-PA | 345 | GG17211-PA | 11..157 | 17..151 | 574 | 88.4 | Plus |
Dere\GG17211-PA | 345 | GG17211-PA | 300..345 | 152..197 | 218 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17288-PA | 207 | GH17288-PA | 1..207 | 1..197 | 730 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Jupiter-PC | 197 | CG31363-PC | 1..197 | 1..197 | 1025 | 100 | Plus |
Jupiter-PE | 208 | CG31363-PE | 1..208 | 1..197 | 1003 | 94.7 | Plus |
Jupiter-PD | 191 | CG31363-PD | 11..191 | 17..197 | 925 | 97.8 | Plus |
Jupiter-PA | 197 | CG31363-PA | 11..197 | 17..197 | 904 | 94.1 | Plus |
Jupiter-PH | 202 | CG31363-PH | 11..202 | 17..197 | 903 | 92.2 | Plus |
Jupiter-PI | 105 | CG31363-PI | 52..105 | 144..197 | 256 | 88.9 | Plus |
Jupiter-PB | 185 | CG31363-PB | 140..185 | 152..197 | 250 | 100 | Plus |
Jupiter-PI | 105 | CG31363-PI | 11..98 | 17..104 | 244 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23754-PA | 203 | GI23754-PA | 1..203 | 1..197 | 647 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12395-PA | 361 | GL12395-PA | 11..166 | 17..151 | 497 | 77.6 | Plus |
Dper\GL12395-PA | 361 | GL12395-PA | 307..361 | 152..197 | 146 | 54.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27493-PE | 159 | GA27493-PE | 1..69 | 1..69 | 331 | 88.4 | Plus |
Dpse\GA27493-PF | 170 | GA27493-PF | 1..64 | 1..64 | 320 | 92.2 | Plus |
Dpse\GA27493-PD | 160 | GA27493-PD | 5..63 | 13..69 | 225 | 71.2 | Plus |
Dpse\GA27493-PB | 153 | GA27493-PB | 5..63 | 13..69 | 223 | 71.2 | Plus |
Dpse\GA27493-PC | 164 | GA27493-PC | 5..58 | 13..64 | 213 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26090-PA | 315 | GM26090-PA | 11..145 | 17..151 | 676 | 97 | Plus |
Dsec\GM26090-PA | 315 | GM26090-PA | 272..315 | 152..197 | 214 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20653-PA | 168 | GD20653-PA | 11..156 | 17..151 | 590 | 89.7 | Plus |
Dsim\GD15110-PA | 183 | GD15110-PA | 140..183 | 152..197 | 214 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10600-PA | 205 | GJ10600-PA | 1..205 | 1..197 | 648 | 72.2 | Plus |