BDGP Sequence Production Resources |
Search the DGRC for RE65233
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 652 |
Well: | 33 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG43386-RC |
Protein status: | RE65233.pep: gold |
Preliminary Size: | 417 |
Sequenced Size: | 1045 |
Gene | Date | Evidence |
---|---|---|
CG15251 | 2001-12-14 | Blastp of sequenced clone |
CG15251 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15251 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15251 | 2008-04-29 | Release 5.5 accounting |
CG15251 | 2008-08-15 | Release 5.9 accounting |
CG15251 | 2008-12-18 | 5.12 accounting |
1045 bp (1045 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071602
> RE65233.complete AGTCATTTGCTTAAAGTTAGTGAACGTGCTAGTATCGCGTATCTGGCGGC GCGGCTTCCAGACGACAACAAAAACACTTGCCTCAAAAAGTTTACTTAAA ATTTTTTTTTTCATCCAACCCGAGCTTTGTGTTTTATTTTGCGGAACTAA TTATGCAGTTCACCAGGAGCCGTTTATTACTATCGATGGCCGTGCTATCG GCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCTCAGCAAACAAATTC CGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCCCGACTTGAATCCTA TCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCAACAAAAGAAAACTG CCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTCGGTTTTGTGTTTGG CAAAATCGACAACTTCCTGGATACAAAGACGCGGGTGATCGAGCAGCTGG ACCGATCGAATATCGAAAAGAACAAGCAGTGGGACATCAAGTCGCCGGTG CCCATCAAGGACTTCCAGACTCTGATTACCGCCGTGGTGTCGCCAAAGAT CCGTTCGATTGGCAACATTGCTAATGACCTGACCACCGGTGTGCTGACCA CGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCGGAAATGCGAACGCC GGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTCTCGGGACCCATCCT GCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGGCGTGACGACACCAG CTCCCGATTCCGATGAGGCGGGCTACTAGGATGTGTAAATAGCAACGATT CAAGGCCAACAAATGGAAGCTGTAATTTATCGTTGAATCCCTATTCGTTT CTTCCCACATCCATCAGAATCTTTGTTGAATTTCCAACCCCCTCGCTCGA ATCGTTTTTATTTTTTTTTGTTTACACCCTAGTTAAGTTTCATGTTTGTA AATATTCTGCATAAACAAATATATATATATAGAGAAATTCACGACACTAC AAAAGCGAATAAAACCGAAAACAGAAAACCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 9858957..9859585 | 1030..402 | 3055 | 99 | Minus |
chrX | 22417052 | chrX | 9861985..9862152 | 312..145 | 840 | 100 | Minus |
chrX | 22417052 | chrX | 9862248..9862391 | 144..1 | 720 | 100 | Minus |
chrX | 22417052 | chrX | 9859653..9859744 | 401..310 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 9967321..9967951 | 1032..402 | 3140 | 99.8 | Minus |
X | 23542271 | X | 9970352..9970519 | 312..145 | 840 | 100 | Minus |
X | 23542271 | X | 9970615..9970758 | 144..1 | 720 | 100 | Minus |
X | 23542271 | X | 9968019..9968110 | 401..310 | 460 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 9975419..9976049 | 1032..402 | 3140 | 99.8 | Minus |
X | 23527363 | X | 9978450..9978617 | 312..145 | 840 | 100 | Minus |
X | 23527363 | X | 9978713..9978856 | 144..1 | 720 | 100 | Minus |
X | 23527363 | X | 9976117..9976208 | 401..310 | 460 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 9858957..9859585 | 402..1030 | 99 | <- | Minus |
chrX | 9859653..9859742 | 312..401 | 100 | <- | Minus |
chrX | 9861986..9862153 | 144..311 | 99 | <- | Minus |
chrX | 9862249..9862391 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15251-RA | 1..627 | 153..779 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15251-RA | 1..627 | 153..779 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43386-RC | 1..627 | 153..779 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15251-RA | 1..627 | 153..779 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43386-RC | 1..627 | 153..779 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15251-RA | 1..1030 | 1..1030 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15251-RA | 1..1030 | 1..1030 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43386-RC | 7..1036 | 1..1030 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15251-RA | 1..1030 | 1..1030 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG43386-RC | 7..1036 | 1..1030 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9967323..9967951 | 402..1030 | 99 | <- | Minus |
X | 9968019..9968108 | 312..401 | 100 | <- | Minus |
X | 9970353..9970520 | 144..311 | 99 | <- | Minus |
X | 9970616..9970758 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9967323..9967951 | 402..1030 | 99 | <- | Minus |
X | 9968019..9968108 | 312..401 | 100 | <- | Minus |
X | 9970353..9970520 | 144..311 | 99 | <- | Minus |
X | 9970616..9970758 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9967323..9967951 | 402..1030 | 99 | <- | Minus |
X | 9968019..9968108 | 312..401 | 100 | <- | Minus |
X | 9970353..9970520 | 144..311 | 99 | <- | Minus |
X | 9970616..9970758 | 1..143 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 9864649..9864791 | 1..143 | 100 | Minus | |
arm_X | 9861356..9861984 | 402..1030 | 99 | <- | Minus |
arm_X | 9862052..9862141 | 312..401 | 100 | <- | Minus |
arm_X | 9864386..9864553 | 144..311 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 9975421..9976049 | 402..1030 | 99 | <- | Minus |
X | 9976117..9976206 | 312..401 | 100 | <- | Minus |
X | 9978451..9978618 | 144..311 | 99 | <- | Minus |
X | 9978714..9978856 | 1..143 | 100 | Minus |
Translation from 152 to 778
> RE65233.pep MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA PDSDEAGY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19142-PA | 208 | GF19142-PA | 1..208 | 1..208 | 862 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18951-PA | 208 | GG18951-PA | 1..208 | 1..208 | 935 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12908-PA | 204 | GH12908-PA | 1..204 | 1..208 | 812 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43386-PD | 208 | CG43386-PD | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PC | 208 | CG15251-PA | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PB | 153 | CG15250-PA | 1..100 | 1..101 | 268 | 62.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14613-PA | 205 | GI14613-PA | 1..205 | 1..208 | 824 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16596-PA | 211 | GL16596-PA | 1..211 | 1..208 | 881 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13601-PA | 211 | GA13601-PA | 1..211 | 1..208 | 884 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24552-PA | 153 | GD24552-PA | 1..103 | 1..103 | 523 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19426-PA | 203 | GJ19426-PA | 32..203 | 39..208 | 815 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25561-PA | 218 | GK25561-PA | 47..218 | 38..208 | 809 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15422-PA | 208 | GE15422-PA | 1..208 | 1..208 | 1047 | 97.1 | Plus |
Translation from 152 to 778
> RE65233.hyp MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA PDSDEAGY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG43386-PD | 208 | CG43386-PD | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PC | 208 | CG15251-PA | 1..208 | 1..208 | 1039 | 100 | Plus |
CG43386-PB | 153 | CG15250-PA | 1..100 | 1..101 | 268 | 62.4 | Plus |