Clone RE65233 Report

Search the DGRC for RE65233

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:652
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG43386-RC
Protein status:RE65233.pep: gold
Preliminary Size:417
Sequenced Size:1045

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15251 2001-12-14 Blastp of sequenced clone
CG15251 2002-01-01 Sim4 clustering to Release 2
CG15251 2003-01-01 Sim4 clustering to Release 3
CG15251 2008-04-29 Release 5.5 accounting
CG15251 2008-08-15 Release 5.9 accounting
CG15251 2008-12-18 5.12 accounting

Clone Sequence Records

RE65233.complete Sequence

1045 bp (1045 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071602

> RE65233.complete
AGTCATTTGCTTAAAGTTAGTGAACGTGCTAGTATCGCGTATCTGGCGGC
GCGGCTTCCAGACGACAACAAAAACACTTGCCTCAAAAAGTTTACTTAAA
ATTTTTTTTTTCATCCAACCCGAGCTTTGTGTTTTATTTTGCGGAACTAA
TTATGCAGTTCACCAGGAGCCGTTTATTACTATCGATGGCCGTGCTATCG
GCACTGCTATCGTTATCGCTGGGCTTTCCCGCACCTCAGCAAACAAATTC
CGAACTGGAGGCGAATTTCCAGGATAGCAGCGATCCCGACTTGAATCCTA
TCAACGCAGAGGAGGTGTTAAGTGTCCAGGAGCGCAACAAAAGAAAACTG
CCCGATGCCACATTCGAGGCTAAGAACGCAGTGCTCGGTTTTGTGTTTGG
CAAAATCGACAACTTCCTGGATACAAAGACGCGGGTGATCGAGCAGCTGG
ACCGATCGAATATCGAAAAGAACAAGCAGTGGGACATCAAGTCGCCGGTG
CCCATCAAGGACTTCCAGACTCTGATTACCGCCGTGGTGTCGCCAAAGAT
CCGTTCGATTGGCAACATTGCTAATGACCTGACCACCGGTGTGCTGACCA
CGATTACCGCCTTTAGTGGCTCCTCCTCGGGCGGCGGAAATGCGAACGCC
GGATTGGGCAATGTGGTTTCCAAGTTCCTCAGCTTCTCGGGACCCATCCT
GCAGGGATCATCTGGCGGAGTTAATGGAATCGCCGGCGTGACGACACCAG
CTCCCGATTCCGATGAGGCGGGCTACTAGGATGTGTAAATAGCAACGATT
CAAGGCCAACAAATGGAAGCTGTAATTTATCGTTGAATCCCTATTCGTTT
CTTCCCACATCCATCAGAATCTTTGTTGAATTTCCAACCCCCTCGCTCGA
ATCGTTTTTATTTTTTTTTGTTTACACCCTAGTTAAGTTTCATGTTTGTA
AATATTCTGCATAAACAAATATATATATATAGAGAAATTCACGACACTAC
AAAAGCGAATAAAACCGAAAACAGAAAACCAAAAAAAAAAAAAAA

RE65233.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15251-RA 1222 CG15251-RA 169..1200 1..1032 5130 99.8 Plus
CG15251.a 1383 CG15251.a 330..1361 1..1032 5130 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9858957..9859585 1030..402 3055 99 Minus
chrX 22417052 chrX 9861985..9862152 312..145 840 100 Minus
chrX 22417052 chrX 9862248..9862391 144..1 720 100 Minus
chrX 22417052 chrX 9859653..9859744 401..310 460 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9967321..9967951 1032..402 3140 99.8 Minus
X 23542271 X 9970352..9970519 312..145 840 100 Minus
X 23542271 X 9970615..9970758 144..1 720 100 Minus
X 23542271 X 9968019..9968110 401..310 460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9975419..9976049 1032..402 3140 99.8 Minus
X 23527363 X 9978450..9978617 312..145 840 100 Minus
X 23527363 X 9978713..9978856 144..1 720 100 Minus
X 23527363 X 9976117..9976208 401..310 460 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:50:47 has no hits.

RE65233.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:51:33 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9858957..9859585 402..1030 99 <- Minus
chrX 9859653..9859742 312..401 100 <- Minus
chrX 9861986..9862153 144..311 99 <- Minus
chrX 9862249..9862391 1..143 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:13 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..627 153..779 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:40 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..627 153..779 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:52 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 1..627 153..779 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:56 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..627 153..779 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:34 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 1..627 153..779 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:37:43 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..1030 1..1030 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:40 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..1030 1..1030 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:52 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 7..1036 1..1030 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:56 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG15251-RA 1..1030 1..1030 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:34 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
CG43386-RC 7..1036 1..1030 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:33 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
X 9967323..9967951 402..1030 99 <- Minus
X 9968019..9968108 312..401 100 <- Minus
X 9970353..9970520 144..311 99 <- Minus
X 9970616..9970758 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:33 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
X 9967323..9967951 402..1030 99 <- Minus
X 9968019..9968108 312..401 100 <- Minus
X 9970353..9970520 144..311 99 <- Minus
X 9970616..9970758 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:33 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
X 9967323..9967951 402..1030 99 <- Minus
X 9968019..9968108 312..401 100 <- Minus
X 9970353..9970520 144..311 99 <- Minus
X 9970616..9970758 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:52 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9864649..9864791 1..143 100   Minus
arm_X 9861356..9861984 402..1030 99 <- Minus
arm_X 9862052..9862141 312..401 100 <- Minus
arm_X 9864386..9864553 144..311 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:55 Download gff for RE65233.complete
Subject Subject Range Query Range Percent Splice Strand
X 9975421..9976049 402..1030 99 <- Minus
X 9976117..9976206 312..401 100 <- Minus
X 9978451..9978618 144..311 99 <- Minus
X 9978714..9978856 1..143 100   Minus

RE65233.pep Sequence

Translation from 152 to 778

> RE65233.pep
MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI
NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD
RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT
ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA
PDSDEAGY*

RE65233.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19142-PA 208 GF19142-PA 1..208 1..208 862 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18951-PA 208 GG18951-PA 1..208 1..208 935 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12908-PA 204 GH12908-PA 1..204 1..208 812 78.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-PD 208 CG43386-PD 1..208 1..208 1039 100 Plus
CG43386-PC 208 CG15251-PA 1..208 1..208 1039 100 Plus
CG43386-PB 153 CG15250-PA 1..100 1..101 268 62.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14613-PA 205 GI14613-PA 1..205 1..208 824 81.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16596-PA 211 GL16596-PA 1..211 1..208 881 86.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13601-PA 211 GA13601-PA 1..211 1..208 884 86.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24552-PA 153 GD24552-PA 1..103 1..103 523 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19426-PA 203 GJ19426-PA 32..203 39..208 815 94.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25561-PA 218 GK25561-PA 47..218 38..208 809 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15422-PA 208 GE15422-PA 1..208 1..208 1047 97.1 Plus

RE65233.hyp Sequence

Translation from 152 to 778

> RE65233.hyp
MQFTRSRLLLSMAVLSALLSLSLGFPAPQQTNSELEANFQDSSDPDLNPI
NAEEVLSVQERNKRKLPDATFEAKNAVLGFVFGKIDNFLDTKTRVIEQLD
RSNIEKNKQWDIKSPVPIKDFQTLITAVVSPKIRSIGNIANDLTTGVLTT
ITAFSGSSSGGGNANAGLGNVVSKFLSFSGPILQGSSGGVNGIAGVTTPA
PDSDEAGY*

RE65233.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43386-PD 208 CG43386-PD 1..208 1..208 1039 100 Plus
CG43386-PC 208 CG15251-PA 1..208 1..208 1039 100 Plus
CG43386-PB 153 CG15250-PA 1..100 1..101 268 62.4 Plus