Clone RE65335 Report

Search the DGRC for RE65335

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:653
Well:35
Vector:pFlc-1
Associated Gene/TranscriptCG13362-RA
Protein status:RE65335.pep: gold
Preliminary Size:768
Sequenced Size:1704

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13362 2002-01-01 Sim4 clustering to Release 2
CG13362 2002-02-26 Blastp of sequenced clone
CG13362 2003-01-01 Sim4 clustering to Release 3
CG13362 2008-04-29 Release 5.5 accounting
CG13362 2008-08-15 Release 5.9 accounting
CG13362 2008-12-18 5.12 accounting

Clone Sequence Records

RE65335.complete Sequence

1704 bp (1704 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089641

> RE65335.complete
GGTTTAGAACAAAGGCGACTGCGCACGCGAGTGGTTTATATAAGTTTGCT
CAATTCTTCATAAATTTGTTCATTGCTTCCCAAGGATAAAGGGAAATTCC
CTCAGAAAATCGTATTTTGGACATAGATATGAGGCTAAGTTTTGTGATTA
CTCTTATCCTGACAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAG
ACAACAACGGAAACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAAT
TCCGCTCACCTATTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGT
TTTTTGGATTTGGAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTAC
GATCCATATGGGATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGT
TTCCAGGCAAGAAGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTA
GCTCTCGGACAACCAGCACCACTCCCGCGCCAACGACAACAACTACCACC
ACCACAACCACCACTCCGGCACCAACAACAAGACCTAGTACTACTACCAC
CAGTACAACCCCACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTA
GTTTCTCCGAAGGACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCC
GCGTACAATCGCCGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCC
ATATCCGGATTACTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGG
AGCAAGGGGTCTCCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGC
CCGGTCAGTATGCCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCC
TTCGCAGCTGTCCACTTCCTCCACATCGTTCGTGTCCCAGCCGGCGGCTC
GTCACATCGAGGGACAGGAATTGGAAGCGGAAGTTGATGGCGAGACAGAT
AACGAGGGAGAGGAAGAGGACGAGGATGAGGAACAGGGGCAGGGGCAGGA
ACAGGATCAGGGCCAGAGCCAGAGTCACAGTCTGGAAGGCATTGCCATCA
AGGCCCAGACAGAAAGACAGGATATAACTTCAGACAGTCCTGTCTAGTTC
AATTGGATGGTGCAGCAACAGCCTTTCTGGTATAAAGCCAATCCACGACT
GACTTGTCACTAAAGGGGTGCCCTAGAGATCTTAAAACAAATATTAAAAA
CAAATGAAAGAACGATTAAATATAATATTTAGTAAGAATGTCAATTCAGG
GATACTCCAGCATATAAAAGTAAGCGTCTGCTGAAAGAATTTTTTTTCAA
TATTTAATAAATATAATAATAAAGAAATTATTAAATAAAAGTAGCCATAA
ATACCGAGAGCCTGCAAGAAAGTAAGTAATCTTAATTAGAGTACGGTATT
ACAAAAAAAATGCCGATAATGGGATTCCATTGATTTCATGTTCTTTTATT
GATTCATATTCGGATGCTCGATCAATTACATTTACACATTTAAATTGTAT
TTATCAATATTTTAATACTTTGCGCTTGTTGCACGAATTTCAACTAGCAA
CGAGCGAAGATCCCTAAGCTCCACCTTTTTCATCTCCATAGTTCCTCCAC
ATCAAACGTGCCTCCTCAATTAGTGGAGAACTATCCTTTAATCATCAATT
CAACAATTACAAATACATTTACTTAACTAGATAAAAAACAAAAAAAAAAA
AAAA

RE65335.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-RA 1718 CG13362-RA 4..1682 4..1682 8395 100 Plus
CG5254.a 1362 CG5254.a 1..368 576..209 1840 100 Minus
sdk-RB 9017 sdk-RB 8739..9017 1682..1404 1395 100 Minus
CG5254.a 1362 CG5254.a 384..427 189..146 220 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 643202..644675 1682..209 7370 100 Minus
chrX 22417052 chrX 645113..645255 146..4 715 100 Minus
chrX 22417052 chrX 644733..644796 209..146 320 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 749241..750714 1682..209 7370 100 Minus
X 23542271 X 751152..751294 146..4 715 100 Minus
X 23542271 X 750772..750835 209..146 320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 757339..758812 1682..209 7370 100 Minus
X 23527363 X 759250..759392 146..4 715 100 Minus
X 23527363 X 758870..758933 209..146 320 100 Minus
Blast to na_te.dros performed 2019-03-16 12:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3783..3954 1177..1338 135 57.2 Plus
S2 1735 S2 S2 1735bp 73..144 1446..1517 126 63.9 Plus
gypsy4 6852 gypsy4 GYPSY4 6852bp 5041..5103 1185..1246 114 66.7 Plus
accord2 7650 accord2 QBERT 7650bp 6553..6635 1265..1185 113 64.7 Minus

RE65335.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:46:09 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 643198..643543 1341..1689 98 == Minus
chrX 643597..643853 1031..1287 100 == Minus
chrX 643976..644289 595..908 100 == Minus
chrX 644426..644675 209..458 100 <- Minus
chrX 644734..644795 147..208 100 <- Minus
chrX 645113..645258 1..146 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:20 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..969 129..1097 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:54 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..969 129..1097 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:53:50 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..969 129..1097 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:51 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..969 129..1097 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:14 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..969 129..1097 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:00:35 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..1682 1..1682 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:54 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..1682 1..1682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:53:50 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 5..1686 1..1682 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:51 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 1..1686 1..1689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:14 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
CG13362-RA 5..1686 1..1682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:46:09 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
X 749237..750714 209..1689 99 <- Minus
X 750773..750834 147..208 100 <- Minus
X 751152..751297 1..146 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:46:09 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
X 749237..750714 209..1689 99 <- Minus
X 750773..750834 147..208 100 <- Minus
X 751152..751297 1..146 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:46:09 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
X 749237..750714 209..1689 99 <- Minus
X 750773..750834 147..208 100 <- Minus
X 751152..751297 1..146 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:53:50 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 643270..644747 209..1689 99 <- Minus
arm_X 644806..644867 147..208 100 <- Minus
arm_X 645185..645330 1..146 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:42 Download gff for RE65335.complete
Subject Subject Range Query Range Percent Splice Strand
X 757335..758812 209..1689 99 <- Minus
X 758871..758932 147..208 100 <- Minus
X 759250..759395 1..146 99   Minus

RE65335.pep Sequence

Translation from 128 to 1096

> RE65335.pep
MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT
YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT
DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP
PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP
QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS
FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH
SLEGIAIKAQTERQDITSDSPV*

RE65335.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21100-PA 813 GF21100-PA 482..813 5..322 571 49 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12746-PA 327 GG12746-PA 1..327 1..322 1028 88.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17859-PA 324 GH17859-PA 7..93 5..89 269 61.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 322 CG13362-PA 1..322 1..322 1684 100 Plus
Sgs1-PA 1286 CG3047-PA 327..489 90..250 159 30.7 Plus
CG43798-PA 213 CG43798-PA 128..197 105..166 152 48.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21727-PA 345 GI21727-PA 178..228 171..226 228 75 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21397-PA 185 GL21397-PA 39..137 167..266 298 59.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12231-PA 318 GA12231-PA 172..270 167..266 298 59.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19025-PA 321 GM19025-PA 1..321 1..322 1105 85.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16462-PA 321 GD16462-PA 1..321 1..322 1102 85.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19108-PA 319 GJ19108-PA 164..256 172..260 250 57.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16175-PA 398 GK16175-PA 11..319 17..287 418 43.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16572-PA 332 GE16572-PA 1..105 1..105 528 91.4 Plus

RE65335.hyp Sequence

Translation from 128 to 1096

> RE65335.hyp
MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT
YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT
DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP
PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP
QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS
FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH
SLEGIAIKAQTERQDITSDSPV*

RE65335.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13362-PA 322 CG13362-PA 1..322 1..322 1684 100 Plus
Sgs1-PA 1286 CG3047-PA 327..489 90..250 159 30.7 Plus
CG43798-PA 213 CG43798-PA 128..197 105..166 152 48.6 Plus