BDGP Sequence Production Resources |
Search the DGRC for RE65335
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 653 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13362-RA |
Protein status: | RE65335.pep: gold |
Preliminary Size: | 768 |
Sequenced Size: | 1704 |
Gene | Date | Evidence |
---|---|---|
CG13362 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13362 | 2002-02-26 | Blastp of sequenced clone |
CG13362 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13362 | 2008-04-29 | Release 5.5 accounting |
CG13362 | 2008-08-15 | Release 5.9 accounting |
CG13362 | 2008-12-18 | 5.12 accounting |
1704 bp (1704 high quality bases) assembled on 2002-02-26
GenBank Submission: AY089641
> RE65335.complete GGTTTAGAACAAAGGCGACTGCGCACGCGAGTGGTTTATATAAGTTTGCT CAATTCTTCATAAATTTGTTCATTGCTTCCCAAGGATAAAGGGAAATTCC CTCAGAAAATCGTATTTTGGACATAGATATGAGGCTAAGTTTTGTGATTA CTCTTATCCTGACAGGTTCCCGACTGTCCAACGCTTTCTGGTGGCCAAAG ACAACAACGGAAACCAGGGAGCCGAGTGGCGGCCAAATCCTCCAGCAAAT TCCGCTCACCTATTTCCGCACATACACTTATCAGCCATTAGCTCCTGGGT TTTTTGGATTTGGAGCTGCTCAGACGCCTATGCTGCCTGGTGCTCAGTAC GATCCATATGGGATGACCAGTTACGCTGCTGGCAGACGACATGACTCCGT TTCCAGGCAAGAAGTTACTGCTCCGACGGACTTGAGCAACGCGCCGAGTA GCTCTCGGACAACCAGCACCACTCCCGCGCCAACGACAACAACTACCACC ACCACAACCACCACTCCGGCACCAACAACAAGACCTAGTACTACTACCAC CAGTACAACCCCACCACCAGTACCACCTCCGCCCCAGTCCACCAGTAGTA GTTTCTCCGAAGGACCCACTTCTAGCTTGCTGCGCTTTGGTGAATATCCC GCGTACAATCGCCGGGTAAACAACCTCTATAACGCCAGGCCTCAGTATCC ATATCCGGATTACTTCAACTATCAGCCGCAGCAGCAGACCGTAGTATCGG AGCAAGGGGTCTCCAGTAACAGTCGCATTCAATTTGTTCCCTGCATGTGC CCGGTCAGTATGCCCAGTTTCGTCTCATCCTCGACAGCGGCCACATTGCC TTCGCAGCTGTCCACTTCCTCCACATCGTTCGTGTCCCAGCCGGCGGCTC GTCACATCGAGGGACAGGAATTGGAAGCGGAAGTTGATGGCGAGACAGAT AACGAGGGAGAGGAAGAGGACGAGGATGAGGAACAGGGGCAGGGGCAGGA ACAGGATCAGGGCCAGAGCCAGAGTCACAGTCTGGAAGGCATTGCCATCA AGGCCCAGACAGAAAGACAGGATATAACTTCAGACAGTCCTGTCTAGTTC AATTGGATGGTGCAGCAACAGCCTTTCTGGTATAAAGCCAATCCACGACT GACTTGTCACTAAAGGGGTGCCCTAGAGATCTTAAAACAAATATTAAAAA CAAATGAAAGAACGATTAAATATAATATTTAGTAAGAATGTCAATTCAGG GATACTCCAGCATATAAAAGTAAGCGTCTGCTGAAAGAATTTTTTTTCAA TATTTAATAAATATAATAATAAAGAAATTATTAAATAAAAGTAGCCATAA ATACCGAGAGCCTGCAAGAAAGTAAGTAATCTTAATTAGAGTACGGTATT ACAAAAAAAATGCCGATAATGGGATTCCATTGATTTCATGTTCTTTTATT GATTCATATTCGGATGCTCGATCAATTACATTTACACATTTAAATTGTAT TTATCAATATTTTAATACTTTGCGCTTGTTGCACGAATTTCAACTAGCAA CGAGCGAAGATCCCTAAGCTCCACCTTTTTCATCTCCATAGTTCCTCCAC ATCAAACGTGCCTCCTCAATTAGTGGAGAACTATCCTTTAATCATCAATT CAACAATTACAAATACATTTACTTAACTAGATAAAAAACAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13362-RA | 1718 | CG13362-RA | 4..1682 | 4..1682 | 8395 | 100 | Plus |
CG5254.a | 1362 | CG5254.a | 1..368 | 576..209 | 1840 | 100 | Minus |
sdk-RB | 9017 | sdk-RB | 8739..9017 | 1682..1404 | 1395 | 100 | Minus |
CG5254.a | 1362 | CG5254.a | 384..427 | 189..146 | 220 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 643202..644675 | 1682..209 | 7370 | 100 | Minus |
chrX | 22417052 | chrX | 645113..645255 | 146..4 | 715 | 100 | Minus |
chrX | 22417052 | chrX | 644733..644796 | 209..146 | 320 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3783..3954 | 1177..1338 | 135 | 57.2 | Plus |
S2 | 1735 | S2 S2 1735bp | 73..144 | 1446..1517 | 126 | 63.9 | Plus |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 5041..5103 | 1185..1246 | 114 | 66.7 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 6553..6635 | 1265..1185 | 113 | 64.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 643198..643543 | 1341..1689 | 98 | == | Minus |
chrX | 643597..643853 | 1031..1287 | 100 | == | Minus |
chrX | 643976..644289 | 595..908 | 100 | == | Minus |
chrX | 644426..644675 | 209..458 | 100 | <- | Minus |
chrX | 644734..644795 | 147..208 | 100 | <- | Minus |
chrX | 645113..645258 | 1..146 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..969 | 129..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..969 | 129..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..969 | 129..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..969 | 129..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..969 | 129..1097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..1682 | 1..1682 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..1682 | 1..1682 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 5..1686 | 1..1682 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 1..1686 | 1..1689 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13362-RA | 5..1686 | 1..1682 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 749237..750714 | 209..1689 | 99 | <- | Minus |
X | 750773..750834 | 147..208 | 100 | <- | Minus |
X | 751152..751297 | 1..146 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 749237..750714 | 209..1689 | 99 | <- | Minus |
X | 750773..750834 | 147..208 | 100 | <- | Minus |
X | 751152..751297 | 1..146 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 749237..750714 | 209..1689 | 99 | <- | Minus |
X | 750773..750834 | 147..208 | 100 | <- | Minus |
X | 751152..751297 | 1..146 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 643270..644747 | 209..1689 | 99 | <- | Minus |
arm_X | 644806..644867 | 147..208 | 100 | <- | Minus |
arm_X | 645185..645330 | 1..146 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 757335..758812 | 209..1689 | 99 | <- | Minus |
X | 758871..758932 | 147..208 | 100 | <- | Minus |
X | 759250..759395 | 1..146 | 99 | Minus |
Translation from 128 to 1096
> RE65335.pep MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH SLEGIAIKAQTERQDITSDSPV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21100-PA | 813 | GF21100-PA | 482..813 | 5..322 | 571 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12746-PA | 327 | GG12746-PA | 1..327 | 1..322 | 1028 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17859-PA | 324 | GH17859-PA | 7..93 | 5..89 | 269 | 61.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13362-PA | 322 | CG13362-PA | 1..322 | 1..322 | 1684 | 100 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 327..489 | 90..250 | 159 | 30.7 | Plus |
CG43798-PA | 213 | CG43798-PA | 128..197 | 105..166 | 152 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21727-PA | 345 | GI21727-PA | 178..228 | 171..226 | 228 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21397-PA | 185 | GL21397-PA | 39..137 | 167..266 | 298 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12231-PA | 318 | GA12231-PA | 172..270 | 167..266 | 298 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19025-PA | 321 | GM19025-PA | 1..321 | 1..322 | 1105 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16462-PA | 321 | GD16462-PA | 1..321 | 1..322 | 1102 | 85.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19108-PA | 319 | GJ19108-PA | 164..256 | 172..260 | 250 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16175-PA | 398 | GK16175-PA | 11..319 | 17..287 | 418 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16572-PA | 332 | GE16572-PA | 1..105 | 1..105 | 528 | 91.4 | Plus |
Translation from 128 to 1096
> RE65335.hyp MRLSFVITLILTGSRLSNAFWWPKTTTETREPSGGQILQQIPLTYFRTYT YQPLAPGFFGFGAAQTPMLPGAQYDPYGMTSYAAGRRHDSVSRQEVTAPT DLSNAPSSSRTTSTTPAPTTTTTTTTTTTPAPTTRPSTTTTSTTPPPVPP PPQSTSSSFSEGPTSSLLRFGEYPAYNRRVNNLYNARPQYPYPDYFNYQP QQQTVVSEQGVSSNSRIQFVPCMCPVSMPSFVSSSTAATLPSQLSTSSTS FVSQPAARHIEGQELEAEVDGETDNEGEEEDEDEEQGQGQEQDQGQSQSH SLEGIAIKAQTERQDITSDSPV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13362-PA | 322 | CG13362-PA | 1..322 | 1..322 | 1684 | 100 | Plus |
Sgs1-PA | 1286 | CG3047-PA | 327..489 | 90..250 | 159 | 30.7 | Plus |
CG43798-PA | 213 | CG43798-PA | 128..197 | 105..166 | 152 | 48.6 | Plus |