Clone RE65433 Report

Search the DGRC for RE65433

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:654
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG10472-RA
Protein status:RE65433.pep: gold
Sequenced Size:949

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10472 2003-01-01 Sim4 clustering to Release 3
CG10472 2004-01-12 Blastp of sequenced clone
CG10472 2008-04-29 Release 5.5 accounting
CG10472 2008-08-15 Release 5.9 accounting
CG10472 2008-12-18 5.12 accounting

Clone Sequence Records

RE65433.complete Sequence

949 bp (949 high quality bases) assembled on 2004-01-12

GenBank Submission: BT011366

> RE65433.complete
TGGGTTGTGATCAAAATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGGC
CACCATTCTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTGA
ACATCGAGACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGGT
AGGATTACTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGGT
GGGACTACTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACCA
TCATCAGTGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCTG
ACCACCGGAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCAA
GGAGGAGGGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTGC
ACGAGGATTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAAG
TTGCCAGTGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGCC
CGTGAAATCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCCT
CCGGATGGGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTTG
CAGTACGCTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGTA
CTTCGGTCTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGAA
TTTCCACCTGCAACGGCGACTCCGGCGGTCCTTTGGTCCTGGATGACGGC
AGCAACACCCTGATTGGAGCCACCTCCTTCGGCATTGCTCTCGGCTGCGA
GGTGGGATGGCCCGGTGTCTTCACCCGTATCACCTACTACCTGGACTGGA
TCGAAGAGAAGAGTGGTGTGGTCAACAACGGCGACTAAGCGTTGATTTTG
ATCTTAAAATAAACGTTTATTTTTGGGTTACAAGAAAAAAAAAAAAAAA

RE65433.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-RA 1204 CG10472-RA 270..1203 4..937 4655 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6055071..6055542 475..4 2300 99.2 Minus
chr3L 24539361 chr3L 6054001..6054360 934..575 1770 99.4 Minus
chr3L 24539361 chr3L 6054911..6055009 574..476 480 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6062434..6062905 475..4 2345 99.8 Minus
3L 28110227 3L 6061369..6061731 937..575 1815 100 Minus
3L 28110227 3L 6062274..6062372 574..476 495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6055534..6056005 475..4 2345 99.7 Minus
3L 28103327 3L 6054469..6054831 937..575 1815 100 Minus
3L 28103327 3L 6055374..6055472 574..476 495 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:31:55 has no hits.

RE65433.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:33:07 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6054001..6054360 575..934 99 <- Minus
chr3L 6054911..6055009 476..574 98 <- Minus
chr3L 6055071..6055544 1..475 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:23 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..873 16..888 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:49 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..873 16..888 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:48 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..873 16..888 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:41 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..873 16..888 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:14 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..873 16..888 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:52:43 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 2..927 4..929 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:49 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 2..927 4..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:48 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 3..936 1..934 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:41 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 2..927 4..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:14 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 3..936 1..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:07 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6061372..6061731 575..934 100 <- Minus
3L 6062274..6062372 476..574 100 <- Minus
3L 6062434..6062907 1..475 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:07 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6061372..6061731 575..934 100 <- Minus
3L 6062274..6062372 476..574 100 <- Minus
3L 6062434..6062907 1..475 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:07 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6061372..6061731 575..934 100 <- Minus
3L 6062274..6062372 476..574 100 <- Minus
3L 6062434..6062907 1..475 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:48 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6054472..6054831 575..934 100 <- Minus
arm_3L 6055374..6055472 476..574 100 <- Minus
arm_3L 6055534..6056007 1..475 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:12 Download gff for RE65433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6054472..6054831 575..934 100 <- Minus
3L 6055374..6055472 476..574 100 <- Minus
3L 6055534..6056007 1..475 99   Minus

RE65433.hyp Sequence

Translation from 3 to 887

> RE65433.hyp
VVIKMKFACATVLLLATILGAQAVDWNSVKNLNIETPMPKVHGETLPSGR
ITGGQIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLT
TGVDVYLGAHDRTNAKEEGQQIIFVETKNVIVHEDWIAETITNDISLIKL
PVPIEFNKYIQPAKLPVKSDSYSTYGGENAIASGWGKISDSATGATDILQ
YATVPIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDGS
NTLIGATSFGIALGCEVGWPGVFTRITYYLDWIEEKSGVVNNGD*

RE65433.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-PA 290 CG10472-PA 1..290 5..294 1544 100 Plus
CG7542-PB 270 CG7542-PB 27..260 51..283 585 50.2 Plus
CG7542-PA 270 CG7542-PA 27..260 51..283 585 50.2 Plus
Jon65Aiv-PA 271 CG6467-PA 1..271 5..289 572 43.9 Plus
Jon65Aiii-PA 274 CG6483-PA 25..272 41..289 559 47.8 Plus

RE65433.pep Sequence

Translation from 15 to 887

> RE65433.pep
MKFACATVLLLATILGAQAVDWNSVKNLNIETPMPKVHGETLPSGRITGG
QIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLTTGVD
VYLGAHDRTNAKEEGQQIIFVETKNVIVHEDWIAETITNDISLIKLPVPI
EFNKYIQPAKLPVKSDSYSTYGGENAIASGWGKISDSATGATDILQYATV
PIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDGSNTLI
GATSFGIALGCEVGWPGVFTRITYYLDWIEEKSGVVNNGD*

RE65433.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23751-PA 292 GF23751-PA 1..292 1..290 1288 84.6 Plus
Dana\GF10666-PA 268 GF10666-PA 1..268 1..285 617 46 Plus
Dana\GF10540-PA 276 GF10540-PA 28..262 47..279 565 48.7 Plus
Dana\GF10664-PA 270 GF10664-PA 36..269 45..286 536 48.6 Plus
Dana\GF10663-PA 274 GF10663-PA 39..272 44..285 532 47.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14091-PA 290 GG14091-PA 1..290 1..290 1326 85.2 Plus
Dere\GG15803-PA 260 GG15803-PA 25..260 43..285 603 46.9 Plus
Dere\GG13625-PA 270 GG13625-PA 27..260 47..279 573 49.4 Plus
Dere\GG14094-PA 272 GG14094-PA 3..271 9..286 563 46.2 Plus
Dere\GG15305-PA 270 GG15305-PA 27..270 33..285 548 47.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16446-PA 290 GH16446-PA 1..289 1..289 1112 71.3 Plus
Dgri\GH16119-PA 263 GH16119-PA 21..263 45..288 730 58.8 Plus
Dgri\GH16120-PA 254 GH16120-PA 12..246 46..279 594 49.2 Plus
Dgri\GH15022-PA 272 GH15022-PA 1..270 1..285 555 44.4 Plus
Dgri\GH15030-PA 447 GH15030-PA 113..380 28..290 540 39.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-PA 290 CG10472-PA 1..290 1..290 1544 100 Plus
CG7542-PB 270 CG7542-PB 27..260 47..279 585 50.2 Plus
CG7542-PA 270 CG7542-PA 27..260 47..279 585 50.2 Plus
Jon65Aiv-PA 271 CG6467-PA 1..271 1..285 572 43.9 Plus
Jon65Aiii-PA 274 CG6483-PA 25..272 37..285 559 47.8 Plus
yip7-PA 270 CG6457-PA 37..270 44..285 558 49.4 Plus
CG10477-PB 272 CG10477-PB 1..270 1..285 531 42.7 Plus
CG10477-PA 272 CG10477-PA 1..270 1..285 531 42.7 Plus
CG6592-PA 438 CG6592-PA 101..368 28..290 519 39.1 Plus
Jon74E-PC 271 CG6298-PC 30..268 45..285 503 44.1 Plus
Jon44E-PB 271 CG8579-PB 39..270 45..286 468 42.4 Plus
Jon44E-PA 271 CG8579-PA 39..270 45..286 468 42.4 Plus
Jon99Cii-PA 265 CG31034-PA 34..263 45..285 458 44 Plus
Jon99Ciii-PB 265 CG31362-PB 34..263 45..285 458 44 Plus
Jon99Ciii-PA 265 CG31362-PA 34..263 45..285 458 44 Plus
CG10469-PA 267 CG10469-PA 14..264 37..284 458 43.5 Plus
Jon99Fi-PA 267 CG18030-PA 36..265 45..285 442 42.3 Plus
Jon99Fii-PA 267 CG2229-PA 36..265 45..285 441 42.3 Plus
CG11529-PA 287 CG11529-PA 40..260 57..284 428 41.6 Plus
Jon25Bii-PB 276 CG8869-PB 41..274 45..285 421 43 Plus
Jon25Bii-PA 276 CG8869-PA 41..274 45..285 421 43 Plus
Jon66Cii-PA 262 CG7170-PA 38..259 45..285 419 41.5 Plus
Jon65Ai-PB 262 CG10475-PB 6..260 8..285 409 39 Plus
Jon65Ai-PA 262 CG10475-PA 6..260 8..285 409 39 Plus
Jon66Ci-PA 260 CG7118-PA 35..257 45..285 408 40.5 Plus
Jon25Bi-PB 266 CG8867-PB 21..263 36..285 408 40.8 Plus
Jon99Ci-PA 272 CG31039-PA 39..270 45..285 404 38.8 Plus
Jon25Biii-PA 258 CG8871-PA 35..256 45..285 388 39.8 Plus
CG6462-PA 319 CG6462-PA 76..319 46..287 385 35.6 Plus
Jon65Aii-PA 259 CG6580-PA 34..257 44..285 359 38.5 Plus
CG18179-PA 268 CG18179-PA 3..266 9..285 333 37.3 Plus
l(2)k05911-PC 639 CG31728-PC 399..634 46..279 330 34.6 Plus
CG7432-PB 721 CG7432-PB 472..717 44..281 325 35.3 Plus
CG3355-PA 314 CG3355-PA 75..306 46..283 324 32.2 Plus
CG6865-PB 285 CG6865-PB 34..279 46..281 323 32.7 Plus
CG4386-PA 372 CG4386-PA 126..355 46..280 323 35.1 Plus
CG8952-PA 276 CG8952-PA 37..274 46..285 321 35.2 Plus
CG8299-PA 260 CG8299-PA 25..256 44..283 317 33.1 Plus
CG18180-PA 264 CG18180-PA 3..262 9..285 317 34.8 Plus
CG4914-PA 374 CG4914-PA 120..364 39..283 317 33.5 Plus
lint-PB 1674 CG8213-PB 1427..1673 44..285 314 31.8 Plus
lint-PC 1693 CG8213-PC 1446..1692 44..285 314 31.8 Plus
Sb-PB 787 CG4316-PB 540..784 43..281 312 33.9 Plus
Sb-PA 787 CG4316-PA 540..784 43..281 312 33.9 Plus
CG3088-PA 252 CG3088-PA 25..250 43..285 308 33.2 Plus
CG31954-PA 277 CG31954-PA 49..277 45..285 308 34.1 Plus
CG4613-PC 374 CG4613-PC 136..362 46..279 306 34.2 Plus
CG4613-PB 374 CG4613-PB 136..362 46..279 306 34.2 Plus
CG9372-PA 408 CG9372-PA 173..402 46..279 303 33.6 Plus
CG8329-PA 259 CG8329-PA 31..256 43..285 297 34.3 Plus
CG6041-PA 308 CG6041-PA 7..277 8..287 297 31.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16701-PA 290 GI16701-PA 1..289 1..289 1202 77.2 Plus
Dmoj\GI12385-PA 264 GI12385-PA 22..264 45..288 682 55.1 Plus
Dmoj\GI12958-PA 279 GI12958-PA 25..277 28..285 591 46.9 Plus
Dmoj\GI12387-PA 266 GI12387-PA 24..260 44..279 579 47.1 Plus
Dmoj\GI16676-PA 273 GI16676-PA 36..271 45..285 571 49.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15526-PA 289 GL15526-PA 1..289 1..290 1243 81.4 Plus
Dper\GL25036-PA 263 GL25036-PA 23..261 40..285 625 47.6 Plus
Dper\GL15536-PA 274 GL15536-PA 37..272 45..285 596 51.9 Plus
Dper\GL25139-PA 270 GL25139-PA 22..270 42..285 592 48.8 Plus
Dper\GL15537-PA 274 GL15537-PA 37..272 45..285 542 49 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10335-PA 289 GA10335-PA 1..289 1..290 1229 80.8 Plus
Dpse\GA23594-PA 263 GA23594-PA 23..261 40..285 625 47.6 Plus
Dpse\GA20426-PA 270 GA20426-PA 22..270 42..285 592 48.8 Plus
Dpse\GA19618-PA 274 GA19618-PA 37..272 45..285 591 51 Plus
Dpse\GA19627-PA 274 GA19627-PA 25..272 37..285 525 48.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13874-PA 290 GM13874-PA 1..290 1..290 1463 95.5 Plus
Dsec\GM25710-PA 270 GM25710-PA 27..260 47..279 583 49.8 Plus
Dsec\GM14745-PA 420 GM14745-PA 83..350 28..290 541 39.9 Plus
Dsec\GM14741-PA 274 GM14741-PA 25..272 37..285 531 47.1 Plus
Dsec\GM13877-PA 272 GM13877-PA 25..270 31..285 525 45.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13158-PA 290 GD13158-PA 1..290 1..290 1472 95.9 Plus
Dsim\GD13922-PA 271 GD13922-PA 1..271 1..285 557 44.9 Plus
Dsim\GD13161-PA 272 GD13161-PA 27..271 33..286 553 47.5 Plus
Dsim\GD13923-PA 274 GD13923-PA 25..272 37..285 546 47.8 Plus
Dsim\GD13160-PA 272 GD13160-PA 3..270 9..285 529 42.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12437-PA 290 GJ12437-PA 1..289 1..289 1200 77.5 Plus
Dvir\GJ12274-PA 263 GJ12274-PA 21..263 45..288 713 57.6 Plus
Dvir\GJ12275-PA 264 GJ12275-PA 14..256 44..285 605 47.1 Plus
Dvir\GJ12928-PA 274 GJ12928-PA 28..272 34..285 585 50.4 Plus
Dvir\GJ13101-PA 249 GJ13101-PA 14..249 43..285 573 46.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17275-PA 297 GK17275-PA 1..297 1..290 1187 76.6 Plus
Dwil\GK17276-PA 290 GK17276-PA 1..290 1..290 1134 74 Plus
Dwil\GK18044-PA 273 GK18044-PA 36..271 43..285 610 48.1 Plus
Dwil\GK17178-PA 270 GK17178-PA 15..265 33..282 583 49 Plus
Dwil\GK16888-PA 274 GK16888-PA 1..272 1..285 534 44.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20514-PA 290 GE20514-PA 1..290 1..290 1451 94.8 Plus
Dyak\GE22140-PA 260 GE22140-PA 25..260 43..285 603 46.9 Plus
Dyak\GE21528-PA 273 GE21528-PA 1..273 1..287 599 46.7 Plus
Dyak\GE22139-PA 260 GE22139-PA 25..260 43..285 598 46.5 Plus
Dyak\GE19921-PA 270 GE19921-PA 27..260 47..279 587 49.8 Plus