Clone RE65495 Report

Search the DGRC for RE65495

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:654
Well:95
Vector:pFlc-1
Associated Gene/Transcriptpon-RA
Protein status:RE65495.pep: gold
Preliminary Size:2013
Sequenced Size:2605

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3346 2002-01-01 Sim4 clustering to Release 2
CG3346 2002-01-03 Blastp of sequenced clone
pon 2008-04-29 Release 5.5 accounting
pon 2008-08-15 Release 5.9 accounting
pon 2008-12-18 5.12 accounting

Clone Sequence Records

RE65495.complete Sequence

2605 bp (2605 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075515

> RE65495.complete
AAAAAAATGGCATTTGGTGTCGTACTGCGTTGTTTATAATTGCTCCTCGC
TGCTCTAGAAAAACAATTTGAATCTGATTAAAGAAACTTAAGATATACAC
ATCGACTTGTGATCGACTGAATAATGCTGGAGACGAAGAGCATAGCTGCA
TTGGCTTTCACGGAGACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAA
AAATGCTGCCCCGCCCCCGAATCCGCAGCAACAACCCCCAGAAAAGGACG
CACAGGATGCAGCTGTCGCGTCGACAGAATCCTGCTTCACCAACGCCGCC
TTCAGTTCCACGCCCAAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAA
GGAGAATAGCCAACCCAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAG
CTGATCTGGCCCAGAAGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAA
CAACAACAACAAAAGCTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCC
GCCCAAGAAGAAGAAGCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGA
ATTTGGAGCTGCCCGAGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCG
GCAACCACGCCCGCCAAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGG
CAGTGATGCGCCGGCCTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCG
AGGCGTCCGAGGCAGCCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTG
GCCGATAGGGATTCGGAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTT
GCCATTCACGCCAACGCTGGGCTGTCGCATCGATTTTCACGGCATGTCCC
TTACGCAGCTAACGCCTAGCAAGCTGCTGGCCGAGAAGCTGGTCTTTTCG
CCCGTTCCGGCGCCCAAACGATCGCTGGGCGCCATCAGCGAGGAGTCGTC
TATGGACATTGGCAAGGAGCTGGATCGCTATCAACTGGAATTGGAGAACA
GCATCAACGAGGCGAAGCTACGGAAGAATGGCGTGCTGGTGGATAGAGAG
TTGCCCAGGAATAGCTTGGAGGTGGAACTGCCCAAGAACACCAAGGTCTC
CTTGGTCATGGAGACCAATACGCAGGAGCTGATGATGCAGGAAGTGGTGA
CGGTGGACACTCAAGTGGAGAGGCGTCTGGTTTGCACCAGACGACGCACA
CTAACCGAGATTAGCGAGGCTTCCGAGGTGGAAGAGGACACGGAGAAGCT
GCTCGAGCAGGACCGCGAAGCAGAGGTGATTCTCGAGCAGGAGAAGATTC
TAGAGCAGGAGATGGTCTCAGAGCGGGAACGACATTTAACGAGGGAGAAG
CAATTGAAGCAGGAGAAACTCCTAGAGAGGGAAAAACATTTGGAGCGAGA
GAAGCTGCAGGAGAAGCTGCACGAGCAGCTCAGGGAAAAGCTCCAGGAGA
GGGCCAAGCACCTGGAGAAGGAGAAGCTGGAGGAGGAGGAGCTCCTGGAA
AGGCAGCTAGAAGAGGAACGGGAAAAGGAGCCAACCGACGGCGATGTGGC
CTATGCCTCCGAATCCGAATCCGACGACGAGCCCGATGATCTAGACTTCA
AGGCACCCGCGCGCTTCGTTCGCGCCTACAGACCCGCCGCTCTGCCCTCC
AAGGCGGCCAGCAAGGAGTCGCTGCAGTCCATCGGATCAAGCAAGTCCGC
CAAATCGGCAGAAGTTAAGCCCAGTATCGGAATGAAAGGCATGATAAGAA
AGTCCATTCGAAGACTGATGCATCCCACGTCGCACACCACGCCATCCGAG
GTAAAGTCCGAGGACAAGGATGAACATGGACATGGACAGGGCCATGGACA
GCACAACATACTCAATAGCATTCGGCACAGCCTGCGCAGGAGGCCACAAA
AGGCGGCCGAGTTGGAGGAGCAAATGGAGCCCGTTCTCGCCGACGTCTCC
ATTATCGACACCAGCGAACGGACCATGAAGCTCCGCTCGAGCGTTGCCCA
AACCGAGTACATGACCATCGAGCAGCTGACCAACGAGAAGAAGCACTCAC
TGCGGAACAGCATTAGGCGGTCCACGCGGGACGTGCTGCGCCATGTGTTC
CACAAGAGTCACGATGCCTATGCAACCGCCAAGTGAGCAGGTTGGCTCCA
CAGATTCAATTGGTGCGTCGATTTTTAGGGGATTTCAAATGGCATTTCTG
TAACCGAAAGCATTTAAATTTATTTGTTATTATTTTTGAAATGCGCCTTC
CCCTTGTTGAATTGACCCAATTGACTTCTTTTCAATTCGATTTTTCAGCA
CCTAGTTAAGTTTTTAATTGCACCCAAAGATTGTCACACAAGACCAGCGA
AAAAAGGAAAGGAAACCTTATTTCATCTGAAAACCACATCATCACCTAGT
TTTTAATCAAGTTTTTTTTCTTAATTTTTCAAGCGAACTCTGCAAATTAA
TTTGCACACTGTTTATAGTTTTAAGTTACTTGATGTTTGCACGTTTATTC
ATATATGTATGTATGTATGTTTGCCCATATATCTTTATATATATATATAT
ATATGCTTTCTAATATATATAACATTTGTTTTTTTATACAAAAAAAAAAA
AAAAA

RE65495.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
pon-RA 2705 pon-RA 38..2628 4..2594 12925 99.9 Plus
pon.a 2682 pon.a 26..2355 4..2333 11635 99.9 Plus
pon.a 2682 pon.a 2355..2592 2357..2594 1175 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4529901..4531889 587..2589 9585 98.8 Plus
chrX 22417052 chrX 4529125..4529711 4..590 2920 99.8 Plus
chrX 22417052 chrX 9909251..9909296 416..461 185 93.5 Plus
chr3L 24539361 chr3L 14017831..14017882 462..411 185 90.4 Minus
chr3L 24539361 chr3L 14741587..14741638 467..416 185 90.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4637110..4639117 587..2594 10010 99.9 Plus
X 23542271 X 4636333..4636919 4..590 2935 100 Plus
X 23542271 X 10017616..10017661 416..461 185 93.5 Plus
3L 28110227 3L 14027758..14027809 462..411 185 90.4 Minus
3L 28110227 3L 14751472..14751523 467..416 185 90.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4645208..4647215 587..2594 10010 99.9 Plus
X 23527363 X 4644431..4645017 4..590 2935 100 Plus
Blast to na_te.dros performed 2019-03-16 02:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2436 395..466 209 78.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2409 412..466 185 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2835 417..469 184 83 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2355 413..466 162 77.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3279..3323 418..462 144 80 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2476 419..461 143 81.4 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7162..7235 399..466 141 72.4 Plus
TART-C 11124 TART-C TARTC 11124bp 8615..8688 399..466 141 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2997 418..469 133 74.5 Plus

RE65495.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:59:47 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4529590..4529709 469..588 100 -> Plus
chrX 4529122..4529533 1..412 99 == Plus
chrX 4529903..4530654 589..1340 99 == Plus
chrX 4530806..4531802 1492..2500 98 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:25 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 1..2013 124..2136 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:25 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 1..2013 124..2136 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:21 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 1..2013 124..2136 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:20 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 1..2013 124..2136 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:27:43 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 1..2013 124..2136 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:13 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 4..2589 4..2589 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:25 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 4..2589 4..2589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:21 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 13..2601 1..2589 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:20 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 4..2589 4..2589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:27:43 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
pon-RA 13..2601 1..2589 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:47 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
X 4636330..4636917 1..588 99 -> Plus
X 4637112..4639112 589..2589 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:47 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
X 4636330..4636917 1..588 99 -> Plus
X 4637112..4639112 589..2589 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:47 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
X 4636330..4636917 1..588 99 -> Plus
X 4637112..4639112 589..2589 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:21 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4530363..4530950 1..588 99 -> Plus
arm_X 4531145..4533145 589..2589 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:54:51 Download gff for RE65495.complete
Subject Subject Range Query Range Percent Splice Strand
X 4644428..4645015 1..588 99 -> Plus
X 4645210..4647210 589..2589 99   Plus

RE65495.pep Sequence

Translation from 123 to 2135

> RE65495.pep
MLETKSIAALAFTETPRKRKRETLYKNAAPPPNPQQQPPEKDAQDAAVAS
TESCFTNAAFSSTPKKLMVARRRLAKENSQPNPFPGLEVKSIADLAQKQQ
HQQHHQQQQQQQQKLPTNPFEVLRQPPKKKKREHACFENPGLNLELPEKQ
FNPYEVVRSATTPAKGFVNPALNLRGSDAPASLNPFEIHRPSEASEAACN
PSGVANPALADRDSEEQLPTSLKIGLPFTPTLGCRIDFHGMSLTQLTPSK
LLAEKLVFSPVPAPKRSLGAISEESSMDIGKELDRYQLELENSINEAKLR
KNGVLVDRELPRNSLEVELPKNTKVSLVMETNTQELMMQEVVTVDTQVER
RLVCTRRRTLTEISEASEVEEDTEKLLEQDREAEVILEQEKILEQEMVSE
RERHLTREKQLKQEKLLEREKHLEREKLQEKLHEQLREKLQERAKHLEKE
KLEEEELLERQLEEEREKEPTDGDVAYASESESDDEPDDLDFKAPARFVR
AYRPAALPSKAASKESLQSIGSSKSAKSAEVKPSIGMKGMIRKSIRRLMH
PTSHTTPSEVKSEDKDEHGHGQGHGQHNILNSIRHSLRRRPQKAAELEEQ
MEPVLADVSIIDTSERTMKLRSSVAQTEYMTIEQLTNEKKHSLRNSIRRS
TRDVLRHVFHKSHDAYATAK*

RE65495.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21417-PA 657 GF21417-PA 1..657 1..670 2018 65.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18716-PA 656 GG18716-PA 1..656 1..670 2678 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17884-PA 582 GH17884-PA 1..305 1..307 1042 70.2 Plus
Dgri\GH17884-PA 582 GH17884-PA 375..579 473..669 489 61.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
pon-PA 670 CG3346-PA 1..670 1..670 3392 100 Plus
Trf2-PI 1714 CG18009-PI 770..958 255..466 180 30.3 Plus
Trf2-PE 1715 CG18009-PE 771..959 255..466 180 30.3 Plus
Trf2-PF 1715 CG18009-PF 771..959 255..466 180 30.3 Plus
Trf2-PG 1715 CG18009-PG 771..959 255..466 180 30.3 Plus
rudhira-PE 2075 CG43154-PE 1154..1635 96..644 177 22.6 Plus
rudhira-PC 2075 CG43154-PC 1154..1635 96..644 177 22.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 3584..4247 3..639 169 17.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 3623..4286 3..639 169 17.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 3584..4247 3..639 169 17.9 Plus
Strn-Mlck-PU 8255 CG44162-PU 3623..4286 3..639 169 17.9 Plus
Trf2-PI 1714 CG18009-PI 822..1045 281..503 165 29.5 Plus
Trf2-PE 1715 CG18009-PE 823..1046 281..503 165 29.5 Plus
Trf2-PF 1715 CG18009-PF 823..1046 281..503 165 29.5 Plus
Trf2-PG 1715 CG18009-PG 823..1046 281..503 165 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16456-PA 655 GI16456-PA 441..655 453..670 477 61.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18584-PA 157 GL18584-PA 1..157 1..158 448 67.3 Plus
Dper\GL14758-PA 118 GL14758-PA 20..93 576..652 247 68.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27120-PA 564 GA27120-PA 1..341 1..370 1134 69.2 Plus
Dpse\GA27120-PA 564 GA27120-PA 200..564 302..670 582 47.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12356-PA 665 GM12356-PA 1..665 1..670 2961 93.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16699-PA 654 GD16699-PA 1..654 1..670 3245 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15857-PA 572 GJ15857-PA 1..572 1..670 1576 59.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16161-PA 601 GK16161-PA 1..347 1..360 1028 60.8 Plus
Dwil\GK16161-PA 601 GK16161-PA 389..601 473..670 492 58.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16355-PA 655 GE16355-PA 1..655 1..670 2633 83.1 Plus

RE65495.hyp Sequence

Translation from 123 to 2135

> RE65495.hyp
MLETKSIAALAFTETPRKRKRETLYKNAAPPPNPQQQPPEKDAQDAAVAS
TESCFTNAAFSSTPKKLMVARRRLAKENSQPNPFPGLEVKSIADLAQKQQ
HQQHHQQQQQQQQKLPTNPFEVLRQPPKKKKREHACFENPGLNLELPEKQ
FNPYEVVRSATTPAKGFVNPALNLRGSDAPASLNPFEIHRPSEASEAACN
PSGVANPALADRDSEEQLPTSLKIGLPFTPTLGCRIDFHGMSLTQLTPSK
LLAEKLVFSPVPAPKRSLGAISEESSMDIGKELDRYQLELENSINEAKLR
KNGVLVDRELPRNSLEVELPKNTKVSLVMETNTQELMMQEVVTVDTQVER
RLVCTRRRTLTEISEASEVEEDTEKLLEQDREAEVILEQEKILEQEMVSE
RERHLTREKQLKQEKLLEREKHLEREKLQEKLHEQLREKLQERAKHLEKE
KLEEEELLERQLEEEREKEPTDGDVAYASESESDDEPDDLDFKAPARFVR
AYRPAALPSKAASKESLQSIGSSKSAKSAEVKPSIGMKGMIRKSIRRLMH
PTSHTTPSEVKSEDKDEHGHGQGHGQHNILNSIRHSLRRRPQKAAELEEQ
MEPVLADVSIIDTSERTMKLRSSVAQTEYMTIEQLTNEKKHSLRNSIRRS
TRDVLRHVFHKSHDAYATAK*

RE65495.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
pon-PA 670 CG3346-PA 1..670 1..670 3392 100 Plus
Trf2-PI 1714 CG18009-PI 770..958 255..466 180 30.3 Plus
Trf2-PE 1715 CG18009-PE 771..959 255..466 180 30.3 Plus
Trf2-PF 1715 CG18009-PF 771..959 255..466 180 30.3 Plus
Trf2-PG 1715 CG18009-PG 771..959 255..466 180 30.3 Plus
Trf2-PI 1714 CG18009-PI 822..1045 281..503 165 29.5 Plus
Trf2-PE 1715 CG18009-PE 823..1046 281..503 165 29.5 Plus
Trf2-PF 1715 CG18009-PF 823..1046 281..503 165 29.5 Plus