Clone RE65607 Report

Search the DGRC for RE65607

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:656
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG17490-RC
Protein status:RE65607.pep: gold
Sequenced Size:1343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17490 2004-03-31 Blastp of sequenced clone
CG17490 2008-04-29 Release 5.5 accounting
CG17490 2008-08-15 Release 5.9 accounting
CG17490 2008-12-18 5.12 accounting

Clone Sequence Records

RE65607.complete Sequence

1343 bp (1343 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012449

> RE65607.complete
ATAATCACATTAACCATGAACCCGTACAATAAGTTTCAAGATATGGTTTT
AAAGCAATGGTACCGGTAGAAAGTTGTGGAAATACATTCCGAGCAATTTT
CAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAATAAGCAATTTA
TGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGCAGTCTTGGA
AGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAATGCCGTCTC
CATTCACAATGACTATTGTAAATTGCATTTTATAAACGAAAAGTTGCAAT
TCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCGATTTACTAT
TTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAATCTGCATCCAA
AAATTATGACATGACCTTTCATACAATAATGAGAAGGTGGGAAACTGACC
GGAAAACGTAAAGCCGACGCTGTCGATGTACTAGGCCAAGTTGACAGGTT
GCTTGTGAGGCTCGAGTGCAGGGAAATAGAAGGAGAGAGTGGAGGGGAGA
GCCGTGCACTGCAAACTGCAAGCGCGGGAGACACCCGCTGACTATATGAG
GGACTTAATCGAGAGAGTCTCGAAAACTTGGAAAACCAGCCAGAGGAGGT
AGGACACGTAACAGACCAAATGGAGACCACAATGGGTGAAGCAGCCGGAG
GAATAGAACTACCACCACTTGGCTATACTAGGTGTCCCTCCAGTGTGCTT
CCGCGGTACCAGTCAAGTTCAGAAGACCGGTCGGATGCTACGGACAGGCG
TGAACGAGAGCTAATGAAAATGAGCGTACAAATAAACGCTCTGAAGAAGA
AGGTGGATGAATTACACGCCGCAGAGACCTTTACGGAGCAAGACCAATAC
CACCACATGCACTACCTAGAATTCGTACGGATAGCTTTCTAAGGCTTCAA
GACACACCGACACCAGTAAAAGTGTCGCAAGAGTGCTGTAACGACCAGAT
GCATCGATTGAGGGAGCCCAGGCGAACGGCGAAACCACAGTAGATACCTT
AAGAATGCGTTGCCGAGGAACCCAGTCACCAGTTTTTCTCCAAGTAATGA
CCATCACCTCCGGTTTTCGAATTCGTAAAATTTTTTGATTTGTGAAATGG
GTACTTTTGTCTGTCCGAAATGCCTGTAAAAGTAAAGTAAATGCCTGTTT
TCATATCAAATCAGATCTTATTTTTAAAGGGAAAATTAGTTCACTTAGCC
TATTGATGTTTATTCCATATCCCCAAAATGTCATTCTAGCCACTAAGGTA
TTTTATAATAAATTTATTTGCGACTCTAAAAAAAAAAAAAAAA

RE65607.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 1381 CG17490-RC 54..1381 1..1328 6640 100 Plus
CG17490-RD 1347 CG17490-RD 56..1325 59..1328 6350 100 Plus
nc_4316.a 4508 nc_4316.a 69..813 1175..431 3725 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22438779..22439675 431..1327 4470 99.9 Plus
chr2L 23010047 chr2L 22431193..22431565 59..431 1865 100 Plus
chr2L 23010047 chr2L 22429538..22429598 1..61 305 100 Plus
chr2L 23010047 chr2L 22454958..22455017 431..490 225 91.7 Plus
chr3LHet 2555433 chr3LHet 839951..840021 685..615 220 87.3 Minus
chr2L 23010047 chr2L 22479852..22479911 490..431 210 90 Minus
chr3L 24539361 chr3L 23252038..23252105 1108..1175 205 86.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22547539..22548436 431..1328 4490 100 Plus
2L 23513712 2L 22539952..22540324 59..431 1865 100 Plus
2L 23513712 2L 22538297..22538357 1..61 305 100 Plus
2L 23513712 2L 22563720..22563779 431..490 225 91.7 Plus
3L 28110227 3L 25354475..25354545 685..615 220 87.3 Minus
2L 23513712 2L 22588632..22588691 490..431 210 90 Minus
3L 28110227 3L 23263121..23263188 1108..1175 205 86.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22547539..22548436 431..1328 4490 100 Plus
2L 23513712 2L 22539952..22540324 59..431 1865 100 Plus
2L 23513712 2L 22538297..22538357 1..61 305 100 Plus
2L 23513712 2L 22563720..22563779 431..490 225 91.6 Plus
3L 28103327 3L 25347575..25347645 685..615 220 87.3 Minus
2L 23513712 2L 22588632..22588691 490..431 210 90 Minus
3L 28103327 3L 23256221..23256288 1108..1175 205 86.7 Plus
3L 28103327 3L 25347215..25347302 1085..998 155 78.4 Minus
3L 28103327 3L 25348288..25348335 486..439 150 87.5 Minus
Blast to na_te.dros performed on 2019-03-16 03:44:28 has no hits.

RE65607.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:45:10 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22438780..22439646 432..1298 99   Plus
chr2L 22429538..22429596 1..59 100 -> Plus
chr2L 22431194..22431565 60..431 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:42:47 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 57..461 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:30 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 57..461 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:48:44 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 57..461 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:17 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 57..461 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:13:58 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 57..461 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:42:47 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..1327 1..1327 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:30 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..1327 1..1327 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:48:44 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 68..1394 1..1327 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:17 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..1327 1..1327 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:13:58 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 68..1394 1..1327 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:10 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538297..22538355 1..59 100 -> Plus
2L 22539953..22540324 60..431 100 -> Plus
2L 22547540..22548435 432..1327 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:10 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538297..22538355 1..59 100 -> Plus
2L 22539953..22540324 60..431 100 -> Plus
2L 22547540..22548435 432..1327 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:10 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538297..22538355 1..59 100 -> Plus
2L 22539953..22540324 60..431 100 -> Plus
2L 22547540..22548435 432..1327 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:48:44 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22431029..22431087 1..59 100 -> Plus
arm_2L 22432685..22433056 60..431 100 -> Plus
arm_2L 22440272..22441167 432..1327 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:42 Download gff for RE65607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22539953..22540324 60..431 100 -> Plus
2L 22547540..22548435 432..1327 100   Plus
2L 22538297..22538355 1..59 100 -> Plus

RE65607.pep Sequence

Translation from 56 to 460

> RE65607.pep
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKT*

RE65607.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PG 707 CG17490-PG 548..671 2..125 652 100 Plus
CG17490-PE 707 CG17490-PE 548..671 2..125 652 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26731-PA 707 GM26731-PA 548..671 2..125 542 83.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17705-PA 707 GD17705-PA 548..671 2..125 534 82.3 Plus

RE65607.hyp Sequence

Translation from 56 to 460

> RE65607.hyp
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKT*

RE65607.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PC 134 CG17490-PC 1..134 1..134 709 100 Plus
CG17490-PG 707 CG17490-PG 548..671 2..125 652 100 Plus
CG17490-PE 707 CG17490-PE 548..671 2..125 652 100 Plus
CG17490-PD 103 CG17490-PD 1..103 32..134 546 100 Plus
CG17490-PF 130 CG17490-PF 1..94 32..125 494 100 Plus