RE65607.complete Sequence
1343 bp (1343 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012449
> RE65607.complete
ATAATCACATTAACCATGAACCCGTACAATAAGTTTCAAGATATGGTTTT
AAAGCAATGGTACCGGTAGAAAGTTGTGGAAATACATTCCGAGCAATTTT
CAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAATAAGCAATTTA
TGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGCAGTCTTGGA
AGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAATGCCGTCTC
CATTCACAATGACTATTGTAAATTGCATTTTATAAACGAAAAGTTGCAAT
TCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCGATTTACTAT
TTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAATCTGCATCCAA
AAATTATGACATGACCTTTCATACAATAATGAGAAGGTGGGAAACTGACC
GGAAAACGTAAAGCCGACGCTGTCGATGTACTAGGCCAAGTTGACAGGTT
GCTTGTGAGGCTCGAGTGCAGGGAAATAGAAGGAGAGAGTGGAGGGGAGA
GCCGTGCACTGCAAACTGCAAGCGCGGGAGACACCCGCTGACTATATGAG
GGACTTAATCGAGAGAGTCTCGAAAACTTGGAAAACCAGCCAGAGGAGGT
AGGACACGTAACAGACCAAATGGAGACCACAATGGGTGAAGCAGCCGGAG
GAATAGAACTACCACCACTTGGCTATACTAGGTGTCCCTCCAGTGTGCTT
CCGCGGTACCAGTCAAGTTCAGAAGACCGGTCGGATGCTACGGACAGGCG
TGAACGAGAGCTAATGAAAATGAGCGTACAAATAAACGCTCTGAAGAAGA
AGGTGGATGAATTACACGCCGCAGAGACCTTTACGGAGCAAGACCAATAC
CACCACATGCACTACCTAGAATTCGTACGGATAGCTTTCTAAGGCTTCAA
GACACACCGACACCAGTAAAAGTGTCGCAAGAGTGCTGTAACGACCAGAT
GCATCGATTGAGGGAGCCCAGGCGAACGGCGAAACCACAGTAGATACCTT
AAGAATGCGTTGCCGAGGAACCCAGTCACCAGTTTTTCTCCAAGTAATGA
CCATCACCTCCGGTTTTCGAATTCGTAAAATTTTTTGATTTGTGAAATGG
GTACTTTTGTCTGTCCGAAATGCCTGTAAAAGTAAAGTAAATGCCTGTTT
TCATATCAAATCAGATCTTATTTTTAAAGGGAAAATTAGTTCACTTAGCC
TATTGATGTTTATTCCATATCCCCAAAATGTCATTCTAGCCACTAAGGTA
TTTTATAATAAATTTATTTGCGACTCTAAAAAAAAAAAAAAAA
RE65607.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 1381 | CG17490-RC | 54..1381 | 1..1328 | 6640 | 100 | Plus |
CG17490-RD | 1347 | CG17490-RD | 56..1325 | 59..1328 | 6350 | 100 | Plus |
nc_4316.a | 4508 | nc_4316.a | 69..813 | 1175..431 | 3725 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 22438779..22439675 | 431..1327 | 4470 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 22431193..22431565 | 59..431 | 1865 | 100 | Plus |
chr2L | 23010047 | chr2L | 22429538..22429598 | 1..61 | 305 | 100 | Plus |
chr2L | 23010047 | chr2L | 22454958..22455017 | 431..490 | 225 | 91.7 | Plus |
chr3LHet | 2555433 | chr3LHet | 839951..840021 | 685..615 | 220 | 87.3 | Minus |
chr2L | 23010047 | chr2L | 22479852..22479911 | 490..431 | 210 | 90 | Minus |
chr3L | 24539361 | chr3L | 23252038..23252105 | 1108..1175 | 205 | 86.8 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22547539..22548436 | 431..1328 | 4490 | 100 | Plus |
2L | 23513712 | 2L | 22539952..22540324 | 59..431 | 1865 | 100 | Plus |
2L | 23513712 | 2L | 22538297..22538357 | 1..61 | 305 | 100 | Plus |
2L | 23513712 | 2L | 22563720..22563779 | 431..490 | 225 | 91.7 | Plus |
3L | 28110227 | 3L | 25354475..25354545 | 685..615 | 220 | 87.3 | Minus |
2L | 23513712 | 2L | 22588632..22588691 | 490..431 | 210 | 90 | Minus |
3L | 28110227 | 3L | 23263121..23263188 | 1108..1175 | 205 | 86.8 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22547539..22548436 | 431..1328 | 4490 | 100 | Plus |
2L | 23513712 | 2L | 22539952..22540324 | 59..431 | 1865 | 100 | Plus |
2L | 23513712 | 2L | 22538297..22538357 | 1..61 | 305 | 100 | Plus |
2L | 23513712 | 2L | 22563720..22563779 | 431..490 | 225 | 91.6 | Plus |
3L | 28103327 | 3L | 25347575..25347645 | 685..615 | 220 | 87.3 | Minus |
2L | 23513712 | 2L | 22588632..22588691 | 490..431 | 210 | 90 | Minus |
3L | 28103327 | 3L | 23256221..23256288 | 1108..1175 | 205 | 86.7 | Plus |
3L | 28103327 | 3L | 25347215..25347302 | 1085..998 | 155 | 78.4 | Minus |
3L | 28103327 | 3L | 25348288..25348335 | 486..439 | 150 | 87.5 | Minus |
Blast to na_te.dros performed on 2019-03-16 03:44:28 has no hits.
RE65607.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:45:10 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 22438780..22439646 | 432..1298 | 99 | | Plus |
chr2L | 22429538..22429596 | 1..59 | 100 | -> | Plus |
chr2L | 22431194..22431565 | 60..431 | 100 | -> | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:42:47 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..405 | 57..461 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:30 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..405 | 57..461 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:48:44 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..405 | 57..461 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:17 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..405 | 57..461 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:13:58 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..405 | 57..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:42:47 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..1327 | 1..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:30 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..1327 | 1..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:48:44 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 68..1394 | 1..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:17 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..1327 | 1..1327 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:13:58 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 68..1394 | 1..1327 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:10 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22538297..22538355 | 1..59 | 100 | -> | Plus |
2L | 22539953..22540324 | 60..431 | 100 | -> | Plus |
2L | 22547540..22548435 | 432..1327 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:10 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22538297..22538355 | 1..59 | 100 | -> | Plus |
2L | 22539953..22540324 | 60..431 | 100 | -> | Plus |
2L | 22547540..22548435 | 432..1327 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:10 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22538297..22538355 | 1..59 | 100 | -> | Plus |
2L | 22539953..22540324 | 60..431 | 100 | -> | Plus |
2L | 22547540..22548435 | 432..1327 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:48:44 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22431029..22431087 | 1..59 | 100 | -> | Plus |
arm_2L | 22432685..22433056 | 60..431 | 100 | -> | Plus |
arm_2L | 22440272..22441167 | 432..1327 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:42 Download gff for
RE65607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539953..22540324 | 60..431 | 100 | -> | Plus |
2L | 22547540..22548435 | 432..1327 | 100 | | Plus |
2L | 22538297..22538355 | 1..59 | 100 | -> | Plus |
RE65607.pep Sequence
Translation from 56 to 460
> RE65607.pep
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKT*
RE65607.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PG | 707 | CG17490-PG | 548..671 | 2..125 | 652 | 100 | Plus |
CG17490-PE | 707 | CG17490-PE | 548..671 | 2..125 | 652 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM26731-PA | 707 | GM26731-PA | 548..671 | 2..125 | 542 | 83.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD17705-PA | 707 | GD17705-PA | 548..671 | 2..125 | 534 | 82.3 | Plus |
RE65607.hyp Sequence
Translation from 56 to 460
> RE65607.hyp
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKT*
RE65607.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PC | 134 | CG17490-PC | 1..134 | 1..134 | 709 | 100 | Plus |
CG17490-PG | 707 | CG17490-PG | 548..671 | 2..125 | 652 | 100 | Plus |
CG17490-PE | 707 | CG17490-PE | 548..671 | 2..125 | 652 | 100 | Plus |
CG17490-PD | 103 | CG17490-PD | 1..103 | 32..134 | 546 | 100 | Plus |
CG17490-PF | 130 | CG17490-PF | 1..94 | 32..125 | 494 | 100 | Plus |