BDGP Sequence Production Resources |
Search the DGRC for RE65629
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 656 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | koko-RB |
Protein status: | RE65629.pep: gold |
Sequenced Size: | 1257 |
Gene | Date | Evidence |
---|---|---|
CG31232 | 2004-03-31 | Blastp of sequenced clone |
koko | 2008-04-29 | Release 5.5 accounting |
koko | 2008-08-15 | Release 5.9 accounting |
koko | 2008-12-18 | 5.12 accounting |
1257 bp (1257 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012450
> RE65629.complete CATTACAGCGCTGCAGCCCAATCAAACCGGTTTGTCGCCTTTCGACTTTT CGGTGGTCTCAGTTCACATCCATTTCCCCAACCAGTCCAATTGCTTTTAT CTTGCTCCTCGAGTGTTAACGAAATTGCTTAAATCCACCCACATTCATCC TTTCATTCAGTTCGGCCTGGGAGTAGCAGCATGAAAAACGTTTTGGATGT CATGTCGATGCAGCAGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGC CCATCGACTATCGCAAAATGAACAAACCCGGCGTGGTGCCGATGTACATC TTTGAGTGCGCTGCCAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGC GGCCATAGTGTTCCATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACG ATGAGTTCCTCATTGCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAG GAAGACGAAAGTGTCAAGATACGCGATGTCATCAACGTGGCATACTGCAC CCTTAACCGGGGCAATGATCCAGTCGACCTGAACGATGAGTACTGGTCGA TGCGGGATGCCATTGTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGC TTCGATCTCAACATAGATCTGGCCCACAAGTACTTACTCCACTACATGAA GACCCTACAAGACTGGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTG CCAAGGCAGCCGCCTCGTATCTGCAAGACTTTCACCACAGCGCCAATATC CTCAAGTACAAGCCCACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCT CCAGACCTACGGCATCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCG CCATGTGGTACAAGCCCTTGGTCAAGGACTTCACCCGAGAGAACCAGTGG GAGATCATCGAGAACGTGATCGAGGTCTACAAGAACGAGGGCTTCCTGAA TGCCACCTAATCGCTGAGAGAGACTGCCAAAACCATTCCTTCTGCCATCT GAACTTATTTATTTTCCCCTCGCCACCTCATAAACCAATCTCAGATACTA CTAGACGTACATATGCTCAAATGTCCAATGCATTTACATCATGCCCTTGC CAAAACAAATAAATTGACCGGTAATGAAATGCTTATGTGATCGACGGGCG AAAGTACATTTACCTATCAGCGAAGACGATAGATCTAAAGTTTACAACTT ATTTATACACTGATTCAATAAACAATTGTTCTGTGAAAAATCAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
koko-RB | 1351 | koko-RB | 39..1279 | 1..1241 | 6205 | 100 | Plus |
koko-RC | 1317 | koko-RC | 164..1245 | 160..1241 | 5410 | 100 | Plus |
koko-RE | 1223 | koko-RE | 70..1151 | 160..1241 | 5410 | 100 | Plus |
koko-RC | 1317 | koko-RC | 136..164 | 1..29 | 145 | 100 | Plus |
koko-RE | 1223 | koko-RE | 42..70 | 1..29 | 145 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14228092..14228924 | 409..1241 | 4165 | 100 | Plus |
chr3R | 27901430 | chr3R | 14227558..14227820 | 1..263 | 1315 | 100 | Plus |
chr3R | 27901430 | chr3R | 14227886..14228031 | 263..408 | 730 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18403894..18404726 | 409..1241 | 4165 | 100 | Plus |
3R | 32079331 | 3R | 18403360..18403622 | 1..263 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 18403688..18403833 | 263..408 | 730 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 18144725..18145557 | 409..1241 | 4165 | 100 | Plus |
3R | 31820162 | 3R | 18144191..18144453 | 1..263 | 1315 | 100 | Plus |
3R | 31820162 | 3R | 18144519..18144664 | 263..408 | 730 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14227558..14227820 | 1..263 | 100 | -> | Plus |
chr3R | 14227887..14228031 | 264..408 | 100 | -> | Plus |
chr3R | 14228092..14228924 | 409..1242 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RA | 491..1302 | 147..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RA | 491..1302 | 147..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RC | 1..780 | 181..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RA | 491..1302 | 147..960 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RC | 1..780 | 181..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RB | 1..1241 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RB | 1..1241 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RB | 39..1279 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RB | 1..1241 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
koko-RB | 39..1279 | 1..1241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18403360..18403622 | 1..263 | 100 | -> | Plus |
3R | 18403689..18403833 | 264..408 | 100 | -> | Plus |
3R | 18403894..18404726 | 409..1242 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18403360..18403622 | 1..263 | 100 | -> | Plus |
3R | 18403689..18403833 | 264..408 | 100 | -> | Plus |
3R | 18403894..18404726 | 409..1242 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18403360..18403622 | 1..263 | 100 | -> | Plus |
3R | 18403689..18403833 | 264..408 | 100 | -> | Plus |
3R | 18403894..18404726 | 409..1242 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14229082..14229344 | 1..263 | 100 | -> | Plus |
arm_3R | 14229411..14229555 | 264..408 | 100 | -> | Plus |
arm_3R | 14229616..14230448 | 409..1242 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18144191..18144453 | 1..263 | 100 | -> | Plus |
3R | 18144520..18144664 | 264..408 | 100 | -> | Plus |
3R | 18144725..18145557 | 409..1242 | 99 | Plus |
Translation from 180 to 959
> RE65629.pep MKNVLDVMSMQQHVELNKAQTMKPIDYRKMNKPGVVPMYIFECAAKLKMK PLTAACAAIVFHRFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKIRDV INVAYCTLNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHK YLLHYMKTLQDWVGTEVWNSVPIAKAAASYLQDFHHSANILKYKPTHVAI GCLSLALQTYGIQVPLTDESDESAMWYKPLVKDFTRENQWEIIENVIEVY KNEGFLNAT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16903-PA | 259 | GF16903-PA | 1..258 | 1..258 | 1288 | 91.9 | Plus |
Dana\GF15386-PA | 402 | GF15386-PA | 27..241 | 28..252 | 161 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22891-PA | 265 | GG22891-PA | 83..264 | 77..258 | 930 | 95.1 | Plus |
Dere\GG21466-PA | 401 | GG21466-PA | 27..241 | 28..252 | 166 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21374-PA | 259 | GH21374-PA | 1..259 | 1..259 | 1223 | 85.3 | Plus |
Dgri\GH10982-PA | 434 | GH10982-PA | 27..241 | 28..252 | 161 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
koko-PE | 259 | CG44010-PE | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PD | 259 | CG44010-PD | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PC | 259 | CG44010-PC | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PB | 259 | CG44010-PB | 1..259 | 1..259 | 1361 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18550-PA | 259 | GI18550-PA | 1..258 | 1..258 | 1222 | 86 | Plus |
Dmoj\GI17494-PA | 415 | GI17494-PA | 27..241 | 28..252 | 160 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24344-PA | 253 | GL24344-PA | 1..252 | 8..258 | 1199 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30142-PC | 353 | GA30142-PC | 123..352 | 29..258 | 1130 | 88.7 | Plus |
Dpse\GA13578-PA | 423 | GA13578-PA | 28..242 | 28..252 | 162 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17868-PA | 426 | GM17868-PA | 168..289 | 79..202 | 576 | 90.3 | Plus |
Dsec\GM16115-PA | 400 | GM16115-PA | 27..241 | 28..252 | 164 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19230-PA | 350 | GD19230-PA | 168..350 | 77..259 | 989 | 99.5 | Plus |
Dsim\GD21618-PA | 400 | GD21618-PA | 27..241 | 28..252 | 164 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20344-PA | 259 | GJ20344-PA | 1..259 | 1..259 | 1233 | 86.5 | Plus |
Dvir\GJ15154-PA | 425 | GJ15154-PA | 27..241 | 28..252 | 160 | 23.3 | Plus |
Translation from 180 to 959
> RE65629.hyp MKNVLDVMSMQQHVELNKAQTMKPIDYRKMNKPGVVPMYIFECAAKLKMK PLTAACAAIVFHRFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKIRDV INVAYCTLNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHK YLLHYMKTLQDWVGTEVWNSVPIAKAAASYLQDFHHSANILKYKPTHVAI GCLSLALQTYGIQVPLTDESDESAMWYKPLVKDFTRENQWEIIENVIEVY KNEGFLNAT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
koko-PE | 259 | CG44010-PE | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PD | 259 | CG44010-PD | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PC | 259 | CG44010-PC | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PB | 259 | CG44010-PB | 1..259 | 1..259 | 1361 | 100 | Plus |