BDGP Sequence Production Resources |
Search the DGRC for RE65748
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 657 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | EndoB-RA |
Protein status: | RE65748.pep: gold |
Preliminary Size: | 1350 |
Sequenced Size: | 2269 |
Gene | Date | Evidence |
---|---|---|
CG9834 | 2001-12-14 | Blastp of sequenced clone |
CG9834 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9834 | 2003-01-01 | Sim4 clustering to Release 3 |
endoB | 2008-04-29 | Release 5.5 accounting |
endoB | 2008-08-15 | Release 5.9 accounting |
endoB | 2008-12-18 | 5.12 accounting |
2269 bp (2269 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071608
> RE65748.complete ATTTTTGGTATATTCCTGGGAGAAACAATGGGTCACACTACGAAGTAGAG GAAATAAATACAAACAAATTGGGCTGTGTAGCGGAATTTAAATTTAAACT TTATCAACGGCAGTGTTAATTAGCGAACCTCTCGGCAAAAATGAATATAA ATCTGCCGAATTTCAATGTGAAGAACCTGGTGAAGGAGGCGGGCAGCACA ATATCACGAGTGGTGCAGCTCACGGAGGAGAAACTGGGCACCACGGAGCG CACCGAGTACGACTTGCACTTCCAGAATCTCGCCGAGCGGGCTGATGTGA CCAAGACATGGACGGAGAAGATAGTGCGCGACACAGAGTCGGTGCTGATA CCCAATCCTCAGAACCGGGTCGAAGACTTCATCTTCGAGAAGATTGAAAA GTCGAAGCCAAAAAGGTTGAGCAACCTAGAGCACCTGGCTCTGGACATGA TCGAGGCTGGGGGCGATTTCGGGCAGGATTTACCCTATGGTCAGGCTCTG ATCAAGGTCGGCCAAGCGGAACAGAAACTGGGCCAGTGCGAGCACGACTT TATAGCCACCTCGGGCATTTGCTTTACACAGCCGTTGCGCAAGTTCCTAG ACGGCGAAATGAAGACAATTGGCAAGGAGCGAGGCATCCTGGAGACCAAG CGCCTGGATCTGGACGCCTGCAAGAACAGGGTGAAGAAAGCGCGCAGCAT GCTGGGTCAGCAATCGAAAGATGGCATCTCGCCAGAGGCCGTCTTGGAAC AGGCGGAACGGGACTTGCGGGTGGCTCAGGCCGAGTTCGACCGGCAGGCG GAGATTACCAAGCTGCTGCTGGACGGGATCAGCACATCGCAGGCATCTCA TTTGCGCCACTTGCACGCCTTCATCCAGACGCAAGTGCGCTACTACAAGC AGTGCGGCGATGTCATGGAGCAGCTGCAGCGTGAACTGGCCAACTTGGGA GGCCCCACGCCATACATTCCGCTCGACGTGAACGAGGCCAGTGCCAGCAA GTCCAACATATCGTCCGGAGCCGCAGCCCGTGGTCCTGGCAACAATCACT CTGCCAATATGGCTGCCACCGGCCACAAGCCTAATCAGCCCATGCACGTC AGCACGGATCAGATGCAGAGGGCACGCGTCCTTTGCTCCTACGACGCCAA GGATCACACCGAGCTTAATTTGAGCGCCAATGAGGTGATCTTCGTGACGG AGTGCTCACCAGTAAACGAGGATTACATGTACGGAAAACAGGGTCTATTG AAGGGTCTGGTGCCACGCGCATTTGTTGAAATGCTCGACGAAGAGCACGA TGTCACCCTCTAAGCCCTCCAGCAATTTGTTCAGCAATAATCAATCATTC AATAATCTCAAGCAAAATTAATGAACAAGAAAATACTCCAAGTACGGCAA TACTCATATGTTAAGAAAGCAGACACGATCGAGAGAAGGGAACGGCAATT GGACAATTAAAGGATGCGGCCAAAGCGGCATTTGGCACTAGCAAGAGAGT ACAATAATTTATTAGAATATACATACATAAATATATACAAGGCATAATAT ACATACATGAGCGTGTTGGTTAGTAAAAGCATTGTAGATTAGCCTTCGGT AATAATCAAACCCAGATCCATGCCCAAAGAGCTACGCTACTCCGTTGCAC AGATCACGCTGTAATCAAATATGCATTCTGGCTGCCTGAAAAACCGTCAA GTTATACATGTAAATTTATGCAATTCCAAACATTATGATTGTTAAATCTA ATCGCATATCTAAAGAGAAAGTGCTGTTTTATTAAGCTTCTCTACACTCG AAAAAGTATTATATATGTGTTATGTTTGTCAATATCTTAGTTAACAAGCG AAATTCTCTGTGCTTTACTATATATCCTATAATTATAAACGTAAGTATGA AATTGTTAATCCTATTATCTATATATTCAGCGGAGGCGTTTCCAATTATT ATCTAATATATTTGCTGCAATTATTATGTTACCAAATTTTTCGTGCAATT TTTGAAAGTCAATTAAAAGAATATTGCTTGTTACATTTAAGGCAAAACTT TGAAACACCAAGGCGCTTGATAGCTAAAAAATAACAGATAAATATTGTTG AAAACGTACAATACAATAATTAAAAAGTAAACAACGATGATTTTTAGGTT TTCAGCAAACAAACAATGTTGTAATATGAAAAGCGAATTTTTAAACACCA ACTATTATACTACATAATTACAAATATATGATCAAAATTAAAACAACAAA ACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
endoB-RA | 2253 | endoB-RA | 4..2253 | 4..2253 | 11235 | 99.9 | Plus |
endoB-RB | 2217 | endoB-RB | 716..2217 | 752..2253 | 7495 | 99.9 | Plus |
endoB-RC | 2217 | endoB-RC | 1149..2217 | 1185..2253 | 5330 | 99.9 | Plus |
endoB-RC | 2217 | endoB-RC | 4..943 | 4..943 | 4700 | 100 | Plus |
endoB-RB | 2217 | endoB-RB | 4..716 | 4..716 | 3565 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 15194619..15195699 | 2253..1183 | 5160 | 98.7 | Minus |
chr2R | 21145070 | chr2R | 15197000..15197500 | 716..216 | 2505 | 100 | Minus |
chr2R | 21145070 | chr2R | 15195753..15195995 | 1186..944 | 1215 | 100 | Minus |
chr2R | 21145070 | chr2R | 15197659..15197873 | 218..4 | 1075 | 100 | Minus |
chr2R | 21145070 | chr2R | 15196577..15196769 | 943..751 | 965 | 100 | Minus |
chr2R | 21145070 | chr2R | 15196846..15196883 | 753..716 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 19307444..19308517 | 2256..1183 | 5355 | 99.9 | Minus |
2R | 25286936 | 2R | 19309816..19310316 | 716..216 | 2505 | 100 | Minus |
2R | 25286936 | 2R | 19308571..19308813 | 1186..944 | 1215 | 100 | Minus |
2R | 25286936 | 2R | 19310475..19310689 | 218..4 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 19309393..19309585 | 943..751 | 965 | 100 | Minus |
2R | 25286936 | 2R | 19309662..19309699 | 753..716 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 19308643..19309716 | 2256..1183 | 5355 | 99.9 | Minus |
2R | 25260384 | 2R | 19311015..19311515 | 716..216 | 2505 | 100 | Minus |
2R | 25260384 | 2R | 19309770..19310012 | 1186..944 | 1215 | 100 | Minus |
2R | 25260384 | 2R | 19311674..19311888 | 218..4 | 1075 | 100 | Minus |
2R | 25260384 | 2R | 19310592..19310784 | 943..751 | 965 | 100 | Minus |
2R | 25260384 | 2R | 19310861..19310898 | 753..716 | 190 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1186..1238 | 2082..2134 | 138 | 77.8 | Plus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 5374..5653 | 1372..1654 | 128 | 53.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 15195755..15195995 | 944..1184 | 100 | <- | Minus |
chr2R | 15196577..15196767 | 753..943 | 100 | <- | Minus |
chr2R | 15196847..15196882 | 717..752 | 100 | <- | Minus |
chr2R | 15194619..15195697 | 1185..2253 | 98 | <- | Minus |
chr2R | 15197000..15197497 | 219..716 | 100 | <- | Minus |
chr2R | 15197659..15197876 | 1..218 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..1173 | 141..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..1173 | 141..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..1173 | 141..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..1173 | 141..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
EndoB-RA | 1..1173 | 141..1313 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..2253 | 1..2253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..2253 | 1..2253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..2226 | 28..2253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
endoB-RA | 1..2253 | 1..2253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
EndoB-RA | 1..2226 | 28..2253 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19307447..19308515 | 1185..2253 | 99 | <- | Minus |
2R | 19308573..19308813 | 944..1184 | 100 | <- | Minus |
2R | 19309393..19309583 | 753..943 | 100 | <- | Minus |
2R | 19309663..19309698 | 717..752 | 100 | <- | Minus |
2R | 19309816..19310313 | 219..716 | 100 | <- | Minus |
2R | 19310475..19310692 | 1..218 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19307447..19308515 | 1185..2253 | 99 | <- | Minus |
2R | 19308573..19308813 | 944..1184 | 100 | <- | Minus |
2R | 19309393..19309583 | 753..943 | 100 | <- | Minus |
2R | 19309663..19309698 | 717..752 | 100 | <- | Minus |
2R | 19309816..19310313 | 219..716 | 100 | <- | Minus |
2R | 19310475..19310692 | 1..218 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19307447..19308515 | 1185..2253 | 99 | <- | Minus |
2R | 19308573..19308813 | 944..1184 | 100 | <- | Minus |
2R | 19309393..19309583 | 753..943 | 100 | <- | Minus |
2R | 19309663..19309698 | 717..752 | 100 | <- | Minus |
2R | 19309816..19310313 | 219..716 | 100 | <- | Minus |
2R | 19310475..19310692 | 1..218 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 15194952..15196020 | 1185..2253 | 99 | <- | Minus |
arm_2R | 15196078..15196318 | 944..1184 | 100 | <- | Minus |
arm_2R | 15196898..15197088 | 753..943 | 100 | <- | Minus |
arm_2R | 15197168..15197203 | 717..752 | 100 | <- | Minus |
arm_2R | 15197321..15197818 | 219..716 | 100 | <- | Minus |
arm_2R | 15197980..15198197 | 1..218 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 19308646..19309714 | 1185..2253 | 99 | <- | Minus |
2R | 19309772..19310012 | 944..1184 | 100 | <- | Minus |
2R | 19310592..19310782 | 753..943 | 100 | <- | Minus |
2R | 19310862..19310897 | 717..752 | 100 | <- | Minus |
2R | 19311015..19311512 | 219..716 | 100 | <- | Minus |
2R | 19311674..19311891 | 1..218 | 99 | Minus |
Translation from 140 to 1312
> RE65748.hyp MNINLPNFNVKNLVKEAGSTISRVVQLTEEKLGTTERTEYDLHFQNLAER ADVTKTWTEKIVRDTESVLIPNPQNRVEDFIFEKIEKSKPKRLSNLEHLA LDMIEAGGDFGQDLPYGQALIKVGQAEQKLGQCEHDFIATSGICFTQPLR KFLDGEMKTIGKERGILETKRLDLDACKNRVKKARSMLGQQSKDGISPEA VLEQAERDLRVAQAEFDRQAEITKLLLDGISTSQASHLRHLHAFIQTQVR YYKQCGDVMEQLQRELANLGGPTPYIPLDVNEASASKSNISSGAAARGPG NNHSANMAATGHKPNQPMHVSTDQMQRARVLCSYDAKDHTELNLSANEVI FVTECSPVNEDYMYGKQGLLKGLVPRAFVEMLDEEHDVTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
EndoB-PA | 390 | CG9834-PA | 1..390 | 1..390 | 2006 | 100 | Plus |
EndoB-PB | 378 | CG9834-PB | 1..378 | 1..390 | 1924 | 96.9 | Plus |
EndoB-PC | 378 | CG9834-PC | 1..378 | 1..390 | 1561 | 81.9 | Plus |
EndoB-PD | 366 | CG9834-PD | 1..366 | 1..390 | 1479 | 78.8 | Plus |
EndoA-PC | 369 | CG14296-PC | 10..361 | 21..381 | 222 | 23.4 | Plus |
Translation from 140 to 1312
> RE65748.pep MNINLPNFNVKNLVKEAGSTISRVVQLTEEKLGTTERTEYDLHFQNLAER ADVTKTWTEKIVRDTESVLIPNPQNRVEDFIFEKIEKSKPKRLSNLEHLA LDMIEAGGDFGQDLPYGQALIKVGQAEQKLGQCEHDFIATSGICFTQPLR KFLDGEMKTIGKERGILETKRLDLDACKNRVKKARSMLGQQSKDGISPEA VLEQAERDLRVAQAEFDRQAEITKLLLDGISTSQASHLRHLHAFIQTQVR YYKQCGDVMEQLQRELANLGGPTPYIPLDVNEASASKSNISSGAAARGPG NNHSANMAATGHKPNQPMHVSTDQMQRARVLCSYDAKDHTELNLSANEVI FVTECSPVNEDYMYGKQGLLKGLVPRAFVEMLDEEHDVTL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11655-PA | 457 | GF11655-PA | 1..276 | 1..276 | 1413 | 95.3 | Plus |
Dana\GF11655-PA | 457 | GF11655-PA | 335..457 | 269..390 | 479 | 79.7 | Plus |
Dana\GF23220-PA | 369 | GF23220-PA | 10..239 | 21..266 | 184 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20916-PA | 450 | GG20916-PA | 1..450 | 1..390 | 1815 | 80 | Plus |
Dere\endoA-PA | 369 | GG23082-PA | 10..239 | 21..266 | 183 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23075-PA | 392 | GH23075-PA | 1..391 | 1..389 | 1819 | 87.3 | Plus |
Dgri\GH18864-PA | 369 | GH18864-PA | 10..361 | 21..381 | 194 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
EndoB-PA | 390 | CG9834-PA | 1..390 | 1..390 | 2006 | 100 | Plus |
EndoB-PB | 378 | CG9834-PB | 1..378 | 1..390 | 1924 | 96.9 | Plus |
EndoB-PC | 378 | CG9834-PC | 1..378 | 1..390 | 1561 | 81.9 | Plus |
EndoB-PD | 366 | CG9834-PD | 1..366 | 1..390 | 1479 | 78.8 | Plus |
EndoA-PC | 369 | CG14296-PC | 10..361 | 21..381 | 222 | 23.4 | Plus |
EndoA-PB | 369 | CG14296-PB | 10..361 | 21..381 | 222 | 23.4 | Plus |
EndoA-PA | 369 | CG14296-PA | 10..361 | 21..381 | 222 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21143-PA | 467 | GI21143-PA | 1..292 | 1..292 | 1380 | 88 | Plus |
Dmoj\GI21143-PA | 467 | GI21143-PA | 350..463 | 268..386 | 453 | 71.9 | Plus |
Dmoj\GI22969-PA | 367 | GI22969-PA | 10..361 | 21..381 | 199 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11787-PA | 392 | GL11787-PA | 1..392 | 1..390 | 1913 | 89.8 | Plus |
Dper\GL23440-PA | 369 | GL23440-PA | 10..361 | 21..381 | 181 | 21.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22064-PA | 392 | GA22064-PA | 1..392 | 1..390 | 1919 | 90.1 | Plus |
Dpse\GA22064-PB | 380 | GA22064-PB | 1..380 | 1..390 | 1840 | 87.2 | Plus |
Dpse\GA22064-PC | 364 | GA22064-PC | 1..364 | 1..390 | 1487 | 75.2 | Plus |
Dpse\endoA-PA | 369 | GA12885-PA | 10..361 | 21..381 | 181 | 21.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19839-PA | 438 | GM19839-PA | 1..438 | 1..390 | 2030 | 88.6 | Plus |
Dsec\GM17895-PA | 369 | GM17895-PA | 10..239 | 21..266 | 183 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25329-PA | 320 | GD25329-PA | 123..320 | 193..390 | 1062 | 99.5 | Plus |
Dsim\GD25329-PA | 320 | GD25329-PA | 1..139 | 1..137 | 652 | 91.4 | Plus |
Dsim\GD19255-PA | 369 | GD19255-PA | 10..239 | 21..266 | 183 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20990-PA | 388 | GJ20990-PA | 1..388 | 1..390 | 1766 | 84.9 | Plus |
Dvir\endoA-PA | 369 | GJ14546-PA | 10..361 | 21..381 | 190 | 22 | Plus |