Clone RE65748 Report

Search the DGRC for RE65748

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:657
Well:48
Vector:pFlc-1
Associated Gene/TranscriptEndoB-RA
Protein status:RE65748.pep: gold
Preliminary Size:1350
Sequenced Size:2269

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9834 2001-12-14 Blastp of sequenced clone
CG9834 2002-01-01 Sim4 clustering to Release 2
CG9834 2003-01-01 Sim4 clustering to Release 3
endoB 2008-04-29 Release 5.5 accounting
endoB 2008-08-15 Release 5.9 accounting
endoB 2008-12-18 5.12 accounting

Clone Sequence Records

RE65748.complete Sequence

2269 bp (2269 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071608

> RE65748.complete
ATTTTTGGTATATTCCTGGGAGAAACAATGGGTCACACTACGAAGTAGAG
GAAATAAATACAAACAAATTGGGCTGTGTAGCGGAATTTAAATTTAAACT
TTATCAACGGCAGTGTTAATTAGCGAACCTCTCGGCAAAAATGAATATAA
ATCTGCCGAATTTCAATGTGAAGAACCTGGTGAAGGAGGCGGGCAGCACA
ATATCACGAGTGGTGCAGCTCACGGAGGAGAAACTGGGCACCACGGAGCG
CACCGAGTACGACTTGCACTTCCAGAATCTCGCCGAGCGGGCTGATGTGA
CCAAGACATGGACGGAGAAGATAGTGCGCGACACAGAGTCGGTGCTGATA
CCCAATCCTCAGAACCGGGTCGAAGACTTCATCTTCGAGAAGATTGAAAA
GTCGAAGCCAAAAAGGTTGAGCAACCTAGAGCACCTGGCTCTGGACATGA
TCGAGGCTGGGGGCGATTTCGGGCAGGATTTACCCTATGGTCAGGCTCTG
ATCAAGGTCGGCCAAGCGGAACAGAAACTGGGCCAGTGCGAGCACGACTT
TATAGCCACCTCGGGCATTTGCTTTACACAGCCGTTGCGCAAGTTCCTAG
ACGGCGAAATGAAGACAATTGGCAAGGAGCGAGGCATCCTGGAGACCAAG
CGCCTGGATCTGGACGCCTGCAAGAACAGGGTGAAGAAAGCGCGCAGCAT
GCTGGGTCAGCAATCGAAAGATGGCATCTCGCCAGAGGCCGTCTTGGAAC
AGGCGGAACGGGACTTGCGGGTGGCTCAGGCCGAGTTCGACCGGCAGGCG
GAGATTACCAAGCTGCTGCTGGACGGGATCAGCACATCGCAGGCATCTCA
TTTGCGCCACTTGCACGCCTTCATCCAGACGCAAGTGCGCTACTACAAGC
AGTGCGGCGATGTCATGGAGCAGCTGCAGCGTGAACTGGCCAACTTGGGA
GGCCCCACGCCATACATTCCGCTCGACGTGAACGAGGCCAGTGCCAGCAA
GTCCAACATATCGTCCGGAGCCGCAGCCCGTGGTCCTGGCAACAATCACT
CTGCCAATATGGCTGCCACCGGCCACAAGCCTAATCAGCCCATGCACGTC
AGCACGGATCAGATGCAGAGGGCACGCGTCCTTTGCTCCTACGACGCCAA
GGATCACACCGAGCTTAATTTGAGCGCCAATGAGGTGATCTTCGTGACGG
AGTGCTCACCAGTAAACGAGGATTACATGTACGGAAAACAGGGTCTATTG
AAGGGTCTGGTGCCACGCGCATTTGTTGAAATGCTCGACGAAGAGCACGA
TGTCACCCTCTAAGCCCTCCAGCAATTTGTTCAGCAATAATCAATCATTC
AATAATCTCAAGCAAAATTAATGAACAAGAAAATACTCCAAGTACGGCAA
TACTCATATGTTAAGAAAGCAGACACGATCGAGAGAAGGGAACGGCAATT
GGACAATTAAAGGATGCGGCCAAAGCGGCATTTGGCACTAGCAAGAGAGT
ACAATAATTTATTAGAATATACATACATAAATATATACAAGGCATAATAT
ACATACATGAGCGTGTTGGTTAGTAAAAGCATTGTAGATTAGCCTTCGGT
AATAATCAAACCCAGATCCATGCCCAAAGAGCTACGCTACTCCGTTGCAC
AGATCACGCTGTAATCAAATATGCATTCTGGCTGCCTGAAAAACCGTCAA
GTTATACATGTAAATTTATGCAATTCCAAACATTATGATTGTTAAATCTA
ATCGCATATCTAAAGAGAAAGTGCTGTTTTATTAAGCTTCTCTACACTCG
AAAAAGTATTATATATGTGTTATGTTTGTCAATATCTTAGTTAACAAGCG
AAATTCTCTGTGCTTTACTATATATCCTATAATTATAAACGTAAGTATGA
AATTGTTAATCCTATTATCTATATATTCAGCGGAGGCGTTTCCAATTATT
ATCTAATATATTTGCTGCAATTATTATGTTACCAAATTTTTCGTGCAATT
TTTGAAAGTCAATTAAAAGAATATTGCTTGTTACATTTAAGGCAAAACTT
TGAAACACCAAGGCGCTTGATAGCTAAAAAATAACAGATAAATATTGTTG
AAAACGTACAATACAATAATTAAAAAGTAAACAACGATGATTTTTAGGTT
TTCAGCAAACAAACAATGTTGTAATATGAAAAGCGAATTTTTAAACACCA
ACTATTATACTACATAATTACAAATATATGATCAAAATTAAAACAACAAA
ACCAAAAAAAAAAAAAAAA

RE65748.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
endoB-RA 2253 endoB-RA 4..2253 4..2253 11235 99.9 Plus
endoB-RB 2217 endoB-RB 716..2217 752..2253 7495 99.9 Plus
endoB-RC 2217 endoB-RC 1149..2217 1185..2253 5330 99.9 Plus
endoB-RC 2217 endoB-RC 4..943 4..943 4700 100 Plus
endoB-RB 2217 endoB-RB 4..716 4..716 3565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15194619..15195699 2253..1183 5160 98.7 Minus
chr2R 21145070 chr2R 15197000..15197500 716..216 2505 100 Minus
chr2R 21145070 chr2R 15195753..15195995 1186..944 1215 100 Minus
chr2R 21145070 chr2R 15197659..15197873 218..4 1075 100 Minus
chr2R 21145070 chr2R 15196577..15196769 943..751 965 100 Minus
chr2R 21145070 chr2R 15196846..15196883 753..716 190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:10:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19307444..19308517 2256..1183 5355 99.9 Minus
2R 25286936 2R 19309816..19310316 716..216 2505 100 Minus
2R 25286936 2R 19308571..19308813 1186..944 1215 100 Minus
2R 25286936 2R 19310475..19310689 218..4 1075 100 Minus
2R 25286936 2R 19309393..19309585 943..751 965 100 Minus
2R 25286936 2R 19309662..19309699 753..716 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19308643..19309716 2256..1183 5355 99.9 Minus
2R 25260384 2R 19311015..19311515 716..216 2505 100 Minus
2R 25260384 2R 19309770..19310012 1186..944 1215 100 Minus
2R 25260384 2R 19311674..19311888 218..4 1075 100 Minus
2R 25260384 2R 19310592..19310784 943..751 965 100 Minus
2R 25260384 2R 19310861..19310898 753..716 190 100 Minus
Blast to na_te.dros performed 2019-03-16 03:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1186..1238 2082..2134 138 77.8 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 5374..5653 1372..1654 128 53.5 Plus

RE65748.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:03:30 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15195755..15195995 944..1184 100 <- Minus
chr2R 15196577..15196767 753..943 100 <- Minus
chr2R 15196847..15196882 717..752 100 <- Minus
chr2R 15194619..15195697 1185..2253 98 <- Minus
chr2R 15197000..15197497 219..716 100 <- Minus
chr2R 15197659..15197876 1..218 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:32 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..1173 141..1313 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:52 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..1173 141..1313 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:43 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..1173 141..1313 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:07 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..1173 141..1313 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:54 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
EndoB-RA 1..1173 141..1313 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:42:20 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..2253 1..2253 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:52 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..2253 1..2253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:43 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..2226 28..2253 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:07 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
endoB-RA 1..2253 1..2253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:54 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
EndoB-RA 1..2226 28..2253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:30 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19307447..19308515 1185..2253 99 <- Minus
2R 19308573..19308813 944..1184 100 <- Minus
2R 19309393..19309583 753..943 100 <- Minus
2R 19309663..19309698 717..752 100 <- Minus
2R 19309816..19310313 219..716 100 <- Minus
2R 19310475..19310692 1..218 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:30 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19307447..19308515 1185..2253 99 <- Minus
2R 19308573..19308813 944..1184 100 <- Minus
2R 19309393..19309583 753..943 100 <- Minus
2R 19309663..19309698 717..752 100 <- Minus
2R 19309816..19310313 219..716 100 <- Minus
2R 19310475..19310692 1..218 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:30 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19307447..19308515 1185..2253 99 <- Minus
2R 19308573..19308813 944..1184 100 <- Minus
2R 19309393..19309583 753..943 100 <- Minus
2R 19309663..19309698 717..752 100 <- Minus
2R 19309816..19310313 219..716 100 <- Minus
2R 19310475..19310692 1..218 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:43 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15194952..15196020 1185..2253 99 <- Minus
arm_2R 15196078..15196318 944..1184 100 <- Minus
arm_2R 15196898..15197088 753..943 100 <- Minus
arm_2R 15197168..15197203 717..752 100 <- Minus
arm_2R 15197321..15197818 219..716 100 <- Minus
arm_2R 15197980..15198197 1..218 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:28 Download gff for RE65748.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19308646..19309714 1185..2253 99 <- Minus
2R 19309772..19310012 944..1184 100 <- Minus
2R 19310592..19310782 753..943 100 <- Minus
2R 19310862..19310897 717..752 100 <- Minus
2R 19311015..19311512 219..716 100 <- Minus
2R 19311674..19311891 1..218 99   Minus

RE65748.hyp Sequence

Translation from 140 to 1312

> RE65748.hyp
MNINLPNFNVKNLVKEAGSTISRVVQLTEEKLGTTERTEYDLHFQNLAER
ADVTKTWTEKIVRDTESVLIPNPQNRVEDFIFEKIEKSKPKRLSNLEHLA
LDMIEAGGDFGQDLPYGQALIKVGQAEQKLGQCEHDFIATSGICFTQPLR
KFLDGEMKTIGKERGILETKRLDLDACKNRVKKARSMLGQQSKDGISPEA
VLEQAERDLRVAQAEFDRQAEITKLLLDGISTSQASHLRHLHAFIQTQVR
YYKQCGDVMEQLQRELANLGGPTPYIPLDVNEASASKSNISSGAAARGPG
NNHSANMAATGHKPNQPMHVSTDQMQRARVLCSYDAKDHTELNLSANEVI
FVTECSPVNEDYMYGKQGLLKGLVPRAFVEMLDEEHDVTL*

RE65748.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
EndoB-PA 390 CG9834-PA 1..390 1..390 2006 100 Plus
EndoB-PB 378 CG9834-PB 1..378 1..390 1924 96.9 Plus
EndoB-PC 378 CG9834-PC 1..378 1..390 1561 81.9 Plus
EndoB-PD 366 CG9834-PD 1..366 1..390 1479 78.8 Plus
EndoA-PC 369 CG14296-PC 10..361 21..381 222 23.4 Plus

RE65748.pep Sequence

Translation from 140 to 1312

> RE65748.pep
MNINLPNFNVKNLVKEAGSTISRVVQLTEEKLGTTERTEYDLHFQNLAER
ADVTKTWTEKIVRDTESVLIPNPQNRVEDFIFEKIEKSKPKRLSNLEHLA
LDMIEAGGDFGQDLPYGQALIKVGQAEQKLGQCEHDFIATSGICFTQPLR
KFLDGEMKTIGKERGILETKRLDLDACKNRVKKARSMLGQQSKDGISPEA
VLEQAERDLRVAQAEFDRQAEITKLLLDGISTSQASHLRHLHAFIQTQVR
YYKQCGDVMEQLQRELANLGGPTPYIPLDVNEASASKSNISSGAAARGPG
NNHSANMAATGHKPNQPMHVSTDQMQRARVLCSYDAKDHTELNLSANEVI
FVTECSPVNEDYMYGKQGLLKGLVPRAFVEMLDEEHDVTL*

RE65748.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11655-PA 457 GF11655-PA 1..276 1..276 1413 95.3 Plus
Dana\GF11655-PA 457 GF11655-PA 335..457 269..390 479 79.7 Plus
Dana\GF23220-PA 369 GF23220-PA 10..239 21..266 184 25 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20916-PA 450 GG20916-PA 1..450 1..390 1815 80 Plus
Dere\endoA-PA 369 GG23082-PA 10..239 21..266 183 25 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23075-PA 392 GH23075-PA 1..391 1..389 1819 87.3 Plus
Dgri\GH18864-PA 369 GH18864-PA 10..361 21..381 194 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
EndoB-PA 390 CG9834-PA 1..390 1..390 2006 100 Plus
EndoB-PB 378 CG9834-PB 1..378 1..390 1924 96.9 Plus
EndoB-PC 378 CG9834-PC 1..378 1..390 1561 81.9 Plus
EndoB-PD 366 CG9834-PD 1..366 1..390 1479 78.8 Plus
EndoA-PC 369 CG14296-PC 10..361 21..381 222 23.4 Plus
EndoA-PB 369 CG14296-PB 10..361 21..381 222 23.4 Plus
EndoA-PA 369 CG14296-PA 10..361 21..381 222 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21143-PA 467 GI21143-PA 1..292 1..292 1380 88 Plus
Dmoj\GI21143-PA 467 GI21143-PA 350..463 268..386 453 71.9 Plus
Dmoj\GI22969-PA 367 GI22969-PA 10..361 21..381 199 23.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11787-PA 392 GL11787-PA 1..392 1..390 1913 89.8 Plus
Dper\GL23440-PA 369 GL23440-PA 10..361 21..381 181 21.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22064-PA 392 GA22064-PA 1..392 1..390 1919 90.1 Plus
Dpse\GA22064-PB 380 GA22064-PB 1..380 1..390 1840 87.2 Plus
Dpse\GA22064-PC 364 GA22064-PC 1..364 1..390 1487 75.2 Plus
Dpse\endoA-PA 369 GA12885-PA 10..361 21..381 181 21.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19839-PA 438 GM19839-PA 1..438 1..390 2030 88.6 Plus
Dsec\GM17895-PA 369 GM17895-PA 10..239 21..266 183 25 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25329-PA 320 GD25329-PA 123..320 193..390 1062 99.5 Plus
Dsim\GD25329-PA 320 GD25329-PA 1..139 1..137 652 91.4 Plus
Dsim\GD19255-PA 369 GD19255-PA 10..239 21..266 183 25 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20990-PA 388 GJ20990-PA 1..388 1..390 1766 84.9 Plus
Dvir\endoA-PA 369 GJ14546-PA 10..361 21..381 190 22 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19643-PA 386 GK19643-PA 1..382 1..385 1818 89.4 Plus
Dwil\endoA-PA 366 GK22746-PA 10..239 21..266 183 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13854-PA 390 GE13854-PA 1..390 1..390 2081 98.7 Plus
Dyak\GE25564-PA 369 GE25564-PA 10..239 21..266 183 25 Plus