Clone RE65881 Report

Search the DGRC for RE65881

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:658
Well:81
Vector:pFlc-1
Associated Gene/TranscriptCG30022-RB
Protein status:RE65881.pep: gold
Sequenced Size:1357

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30022 2004-03-31 Blastp of sequenced clone
CG30022 2008-04-29 Release 5.5 accounting
CG30022 2008-08-15 Release 5.9 accounting
CG30022 2008-12-18 5.12 accounting

Clone Sequence Records

RE65881.complete Sequence

1357 bp (1357 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012447

> RE65881.complete
AGTTGAACTCAACACTTCAGCTGATGTGCCGTGATGTTTTCATTTTTCTG
TGTTCCTCAAACTTTGTTTATTGCTGTGTAAATTTTACCGAATACTCTTT
TATTTGTTTGTAAATACAATTTCGCGAGTGATATGCTTTAGCTCTGATCA
AGTGTATATTTTGTGATAATCAAAAGACTGTAATCGCAACAAAAAAAAAA
ATGCTCAATTAACAGTAATTTATTAAATTAGGAACTTTATCAGGTGCCAT
AAGCTAGCTCAATAGTGATTAACCAAGAATAAGAAAGTGCAACAACAATA
ATCGAGTATCGCATTCAAGGGGTAAATAGAAATCTACACGAGGCAAATAA
TTACACACGAAGCGTATCTATCGCGTATACGAACCTCAATCAGATAGAAA
TACGAGTCCAAAATGAGAATAGTTGGATCCAGTATGCTGGCAGCCCTCAA
GCGGCTATCAACGAACCAACCCCCCACCTTGGTCAGTAACATCCGGTACC
TGAGCTCGTTTGGAACCATGAGCCTGCCGGAGCGCCAGCCCTTTTCTCCA
GACTTCTTCTTCCGTCAACTTTTTGATGGAGAAAGCAGCACCTATAGCTA
CCTTCTGGCCGATCTAAAGAATGGTCAGGCCGTAATCATTGATCCTGTTT
TGGAGCAGGCGAAACGAGATGCCCAGCTGGTCAAGGATCTGGGCTTCGAG
TTGAAGTATGCCATCAACACACACATGCATGCGGATCACATAACGGGCAG
TGGCTGGTTGAGGAAGTTAACTGGGTGTCAATCTGTGATTGCTGCCGCCA
GTGGAGCCAAGGCGGATCGTCACCTGAATGAAGGGGATCGCATAGATTTC
GGCACCCATGTGATTGATGCTCTGGCCACTCCGGGACACACAAATGGCTG
CATGACCTATGTGATCAAGGATCAGGGTTGTGTCTTTACCGGAGATACTC
TCCTGATACGAGGCTGTGGACGCACCGATTTCCAGGAAGGCTGCCCACGT
AATCTCTACGAGAATGTGCACAGTAAGATCTTCACACTCCCGGAAAACTT
TCGCATATATCCGGCGCACGACTATAAAGGTCAAATGGAAAGCAGTGTGT
GGGAGGAGAAGCGGTATAACCCCAGACTGACTAAGGATATTGAAGAGTTT
GTCAAAATCATGGAAAACCTAAATTTACCATATCCCAAGAAAATAGATGC
CTCGCTGCCCGCCAATCGAGAGTGCGGGGTGTACGATATACCCAAGGAAT
AATTCCAACCCCTGCAAACACTATATACGCAGCTTATATAATAATGTTTC
AAAGAGACTTGTAATCTTTTAAATAAATAATCATAATAATCCTAAAAAAA
AAAAAAA

RE65881.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30022-RB 1474 CG30022-RB 82..1422 1..1341 6690 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7275650..7276214 568..1 2715 98.9 Minus
chr2R 21145070 chr2R 7274987..7275350 1077..714 1820 100 Minus
chr2R 21145070 chr2R 7274613..7274760 1341..1194 740 100 Minus
chr2R 21145070 chr2R 7275442..7275590 713..565 715 98.7 Minus
chr2R 21145070 chr2R 7274814..7274932 1196..1078 595 100 Minus
chr2RHet 3288813 chr2RHet 1142464..1142582 1078..1196 565 98.3 Plus
chr2RHet 3288813 chr2RHet 1576573..1576691 1078..1196 565 98.3 Plus
chr2RHet 3288813 chr2RHet 1142167..1142302 565..700 455 89 Plus
chr2RHet 3288813 chr2RHet 1142312..1142409 980..1077 445 96.9 Plus
chr2RHet 3288813 chr2RHet 1576328..1576438 565..675 420 91.9 Plus
chr2RHet 3288813 chr2RHet 1576433..1576518 992..1077 400 97.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11388208..11388775 568..1 2825 99.8 Minus
2R 25286936 2R 11387545..11387908 1077..714 1820 100 Minus
2R 25286936 2R 11387171..11387318 1341..1194 740 100 Minus
2R 25286936 2R 11388000..11388148 713..565 730 99.3 Minus
2R 25286936 2R 11387372..11387490 1196..1078 595 100 Minus
2R 25286936 2R 2374937..2375055 1078..1196 565 98.3 Plus
2R 25286936 2R 2801494..2801612 1078..1196 565 98.3 Plus
2R 25286936 2R 2374640..2374775 565..700 455 89 Plus
2R 25286936 2R 2374785..2374882 980..1077 445 96.9 Plus
2R 25286936 2R 2801249..2801359 565..675 420 91.9 Plus
2R 25286936 2R 2801354..2801439 992..1077 400 97.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11389407..11389974 568..1 2825 99.8 Minus
2R 25260384 2R 11388744..11389107 1077..714 1820 100 Minus
2R 25260384 2R 11388370..11388517 1341..1194 740 100 Minus
2R 25260384 2R 11389199..11389347 713..565 730 99.3 Minus
2R 25260384 2R 11388571..11388689 1196..1078 595 100 Minus
2R 25260384 2R 2374937..2375055 1078..1196 565 98.3 Plus
2R 25260384 2R 2801494..2801612 1078..1196 565 98.3 Plus
2R 25260384 2R 2374640..2374775 565..700 455 88.9 Plus
2R 25260384 2R 2374785..2374882 980..1077 445 96.9 Plus
2R 25260384 2R 2801249..2801359 565..675 420 91.8 Plus
2R 25260384 2R 2801354..2801439 992..1077 400 97.6 Plus
Blast to na_te.dros performed on 2019-03-16 12:51:00 has no hits.

RE65881.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:51:41 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7275442..7275586 569..713 99 <- Minus
chr2R 7274814..7274932 1078..1196 100 <- Minus
chr2R 7274987..7275350 714..1077 100 <- Minus
chr2R 7274611..7274757 1197..1343 99 <- Minus
chr2R 7275650..7276214 1..568 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:38 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 1..840 413..1252 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:34 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 1..840 413..1252 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:11:11 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 1..840 413..1252 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:20 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 1..840 413..1252 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:47 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 1..840 413..1252 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:15 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 3..1344 1..1343 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:34 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 3..1344 1..1343 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:11:11 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 5..1346 1..1343 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:20 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 3..1344 1..1343 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:47 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
CG30022-RB 5..1346 1..1343 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:41 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11387169..11387315 1197..1343 99 <- Minus
2R 11387372..11387490 1078..1196 100 <- Minus
2R 11387545..11387908 714..1077 100 <- Minus
2R 11388000..11388144 569..713 100 <- Minus
2R 11388208..11388775 1..568 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:41 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11387169..11387315 1197..1343 99 <- Minus
2R 11387372..11387490 1078..1196 100 <- Minus
2R 11387545..11387908 714..1077 100 <- Minus
2R 11388000..11388144 569..713 100 <- Minus
2R 11388208..11388775 1..568 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:41 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11387169..11387315 1197..1343 99 <- Minus
2R 11387372..11387490 1078..1196 100 <- Minus
2R 11387545..11387908 714..1077 100 <- Minus
2R 11388000..11388144 569..713 100 <- Minus
2R 11388208..11388775 1..568 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:11:11 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7274674..7274820 1197..1343 99 <- Minus
arm_2R 7274877..7274995 1078..1196 100 <- Minus
arm_2R 7275050..7275413 714..1077 100 <- Minus
arm_2R 7275505..7275649 569..713 100 <- Minus
arm_2R 7275713..7276280 1..568 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:46 Download gff for RE65881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11388744..11389107 714..1077 100 <- Minus
2R 11389199..11389343 569..713 100 <- Minus
2R 11389407..11389974 1..568 99   Minus
2R 11388368..11388514 1197..1343 99 <- Minus
2R 11388571..11388689 1078..1196 100 <- Minus

RE65881.pep Sequence

Translation from 412 to 1251

> RE65881.pep
MRIVGSSMLAALKRLSTNQPPTLVSNIRYLSSFGTMSLPERQPFSPDFFF
RQLFDGESSTYSYLLADLKNGQAVIIDPVLEQAKRDAQLVKDLGFELKYA
INTHMHADHITGSGWLRKLTGCQSVIAAASGAKADRHLNEGDRIDFGTHV
IDALATPGHTNGCMTYVIKDQGCVFTGDTLLIRGCGRTDFQEGCPRNLYE
NVHSKIFTLPENFRIYPAHDYKGQMESSVWEEKRYNPRLTKDIEEFVKIM
ENLNLPYPKKIDASLPANRECGVYDIPKE*

RE65881.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12395-PA 657 GF12395-PA 27..195 53..221 881 92.3 Plus
Dana\GF10361-PA 305 GF10361-PA 59..225 61..224 210 31.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22649-PA 660 GG22649-PA 27..195 53..221 930 97.6 Plus
Dere\GG16137-PA 348 GG16137-PA 102..268 61..224 213 31 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20506-PA 698 GH20506-PA 27..195 53..221 813 84.6 Plus
Dgri\GH16754-PA 303 GH16754-PA 59..223 61..224 205 30.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30022-PB 279 CG30022-PB 1..279 1..279 1479 100 Plus
tzn-PB 271 CG4365-PB 25..188 61..221 209 32.1 Plus
tzn-PA 305 CG4365-PA 59..222 61..221 209 32.1 Plus
tzn-PC 348 CG4365-PC 102..265 61..221 209 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21050-PA 859 GI21050-PA 27..252 53..278 1121 87.2 Plus
Dmoj\GI13415-PA 301 GI13415-PA 55..221 61..224 212 32.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10396-PA 622 GL10396-PA 372..622 29..279 1186 84.1 Plus
Dper\GL10395-PA 136 GL10395-PA 1..125 1..126 545 82.7 Plus
Dper\GL10396-PA 622 GL10396-PA 1..58 164..221 313 91.4 Plus
Dper\GL12815-PA 305 GL12815-PA 59..225 61..224 208 31 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30464-PA 296 GA30464-PA 1..296 1..279 1314 82.4 Plus
Dpse\GA24963-PB 268 GA24963-PB 23..268 34..279 1169 85 Plus
Dpse\GA18136-PA 305 GA18136-PA 59..225 61..224 212 31.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22320-PA 348 GM22320-PA 102..268 61..224 213 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25902-PA 657 GD25902-PA 27..195 53..221 939 99.4 Plus
Dsim\GD14908-PA 348 GD14908-PA 102..268 61..224 213 32.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21974-PA 673 GJ21974-PA 27..195 53..221 817 84.6 Plus
Dvir\GJ11540-PA 305 GJ11540-PA 59..225 61..224 219 33.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21885-PA 847 GK21885-PA 27..252 53..278 1088 83.6 Plus
Dwil\GK10504-PA 308 GK10504-PA 59..228 61..224 205 32.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13523-PA 658 GE13523-PA 27..195 53..221 931 97.6 Plus
Dyak\GE19704-PA 348 GE19704-PA 102..268 61..224 212 31 Plus
Dyak\GE19707-PA 348 GE19707-PA 102..268 61..224 212 31 Plus

RE65881.hyp Sequence

Translation from 412 to 1251

> RE65881.hyp
MRIVGSSMLAALKRLSTNQPPTLVSNIRYLSSFGTMSLPERQPFSPDFFF
RQLFDGESSTYSYLLADLKNGQAVIIDPVLEQAKRDAQLVKDLGFELKYA
INTHMHADHITGSGWLRKLTGCQSVIAAASGAKADRHLNEGDRIDFGTHV
IDALATPGHTNGCMTYVIKDQGCVFTGDTLLIRGCGRTDFQEGCPRNLYE
NVHSKIFTLPENFRIYPAHDYKGQMESSVWEEKRYNPRLTKDIEEFVKIM
ENLNLPYPKKIDASLPANRECGVYDIPKE*

RE65881.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30022-PB 279 CG30022-PB 1..279 1..279 1479 100 Plus
CG4365-PB 271 CG4365-PB 25..188 61..221 209 32.1 Plus
CG4365-PA 305 CG4365-PA 59..222 61..221 209 32.1 Plus
CG4365-PC 348 CG4365-PC 102..265 61..221 209 32.1 Plus