Clone RE66051 Report

Search the DGRC for RE66051

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:660
Well:51
Vector:pFlc-1
Associated Gene/TranscriptVps16A-RA
Protein status:RE66051.pep: gold
Preliminary Size:2708
Sequenced Size:2742

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8454 2001-12-14 Blastp of sequenced clone
CG8454 2002-01-01 Sim4 clustering to Release 2
CG8454 2003-01-01 Sim4 clustering to Release 3
Vps16A 2008-04-29 Release 5.5 accounting
Vps16A 2008-08-15 Release 5.9 accounting
Vps16A 2008-12-18 5.12 accounting

Clone Sequence Records

RE66051.complete Sequence

2742 bp (2742 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071611

> RE66051.complete
AGCTGTTGCGCTGCAAACTGTGGGTGAAAAATGCAAGCGGATAAGACTAA
TGTTTTTCGATTAAAATAAGGAACTAATAACTCAGACAACATGCCTATCA
TGTACAACACGGGGGAGTGGTTCAAGGTGCGACCGGACTACTACAGAAAA
GTGGAACTGGCTACGCCTGATTGGCCTCTGGACCTGGACTTGGAGTATAT
GTGGGTGGAAGTGGCTCCCTATGGAGGACCACTGGCGGTCACTCGTGATC
CGACCAAATTGGTGCCGGTAAAGGGTAACGCTAGACCCATGATTCGCATC
TTTGATACCACCGGCAGGGAAATGGGTCACATATTGTGGAACCATGGCAA
ACTTATTGCCATGGGCTGGTCAGACATGGAGGAGCTTATCTGCATCCAGG
AGAACGCCACCGTCTTTGTCTACGACATGTTTGGTCGGGAAAAGGAGTCC
TACAGCATCGGCGATGAGGCCAGTGTCACAAAGATTGTGGAGGGCAAGGT
GTTCCAGTCCTCAGCTGGCACAGGAGTGGCTGTAATGACCACATCCGGTC
GGGTTTTCCTCAAGCAGAACAGCAGCAAGACTGAAAGAAAGCTGCCGGAT
ATTCCCAATTCCAGCATGAACTGTTCCTGCTGGGAGATCGTAACCGAGGG
ACGCAACAGCTACTGTCTGCTGGGAAGGGATCGAGAGGTCATAAAGCTGT
TTCCAGGCGAAACTGTGGGAACTATTACCGCCAATCTCTTTGAGAAACCG
CACGAGCGAATCATAAAGATATCTGTGTCGTACAACCATCAGCACTTGGC
ACTGTACACCAACACCGGTCTTCTTTGGCTGGGCAGCGTAGATATGCGGC
AAAAGTATTGTGAATTCGACACCGGACGTAAAGATATGCCCCTCCAAATG
GAGTGGATCATGAACTCTGACAACAGCGAGGCGGATGCGGTGGTCATTTC
ATATCCATCGTACCTCTTAATTGTAAATCGTAACGCTGATCGCAGTGACT
TTCCCTACGATCCGGTGATGTTTCTTGTGGCTGAAATGGATGGCGTTCGC
ATTATTACTCAGAGTTCGCATGAAATAATACAGCGCCTGCCAAAATGCGT
TGAGAACATATTTGCAGTGAATAGCCAGGAACCGGCTAGCTATCTCTTTG
AGGCACAGAAAAAGTTTGAGGAGAAGTCCTACAAGTCGGATGAGTATCTC
AGCATGTGTCGGGAAAAGATCGATCTGGCAGTGTCCGAATGTATTGAGGC
GGCTTCATATGAGTTTTGTCCGGAAACTCAAAAGAGCTTGCTTAGGACGG
CCTATTTTGGAAAAGGCTTTATTCGTAACCACAATCCAGATGAATATATG
CGTATTATGCGAATACTGAGGGTTCTTAACACCTTGCGGCATGAGCGAAT
TGCCATGCCCATCACCTTCAAACAATTCTCACATCTTAATACCGAGGTCA
TACTCAGCCGTTTGGTATTCCGCAAACACTATGCCATTGCGATACAAGTG
GCCAAGCATTTAAATCTGCCCGAATCGTGGATCTTGGAACACTGGGCTTA
CCATAAAGTGATGAATGATCCCAATGATACTGAAGTGGCGCGTAAGATAA
CTGAAAAGTTCAAGAATCCGTCGGTCGAGGGAATTTCTTTCTGCAATATT
GCGTCAAAGGCGCATCAAGCTGGACGAGATGACCTGGCCATTAAGCTGCT
AGAGCTCGAGTCTCGTGCTTCGCTTCACGTACCACTACTTCTGAAGATGC
GCAAGTTTGATCGGGCGGTGGGCAGTGCCACACAGTCCGGCGATACAGAG
TTGATCACCCAAGTTCTCTTGGAGATGAAAATGCACATGATGCTGTCCAA
TTTGCACATGACTATTAGGGACCATCCACTGGCTCTAAACATATACAAAA
AGATAATGCGGGAGTCCAACAGAGCTGGACTCTATGGGATTTACAACACC
GAAGACGACCAAAAGGCCATCGCTGAGTATCACTTCCAGAATGCCATTGA
AACTGAAGGATTGGAGTCGAATCTTTCGATGATTGGAAACGCCTATGCCC
AGGGCCGTTGCACATTGGAAGCGGAGCTTTGTGCGGATACCAGCCGATTG
ATTAAGCTGCAAAAGACTCTAAGCACCAAGTATAATGTCAGCTTAAATGG
CTTGTCAATACATGAGACCATTCAAGAATTACTGCTGATCGGCGAATTGA
AAGAGGCAGAGCGAATCAGAAGCGAATTTAAAGTGCCCGATCGTCGGTTC
TGGTGGCTACGAATCCTCACACTTTCTAGTCAACACAAGTGGGAGGAGTT
GGAAAAGTTAGCTAAAAGTAAAAAGAGCCCCATTGGCTACGATCCTTTTG
TTGAGGTCTGCTTAAAACAGGACAATGTAATGGAGGCCCGAAAGTATATA
CCAAGGTGTCGGGACAATCGCCGGGTCGTCTGGTATATGCGAGCAAACCT
ATTTAACGAAGCCATAGATTCCGCCTTCGAGCAGCGTGATGTGCACAGTC
TCTTTGAGTTGCAAAAGAACCAGGCGATCGTTAACAATGGCACACTGTTG
AGCAAAGTTTGCGATTGCATTGCCATGCTGGAGGGAAAGTAGTCAAAACA
TTCGTATTCATAAACAATTATTCATGTCTATACGAATAGCACTCTTAAGC
TTATTCGGTATTGTCAATCAGGACGTGCTCTTGATAAAAGTAATTATGCT
CGTAATAAATATAAATTATTTTGTAAATAAAAAAAAAAAAAA

RE66051.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-RA 2818 Vps16A-RA 35..2774 1..2740 13670 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5093587..5094275 608..1296 3445 100 Plus
chr3R 27901430 chr3R 5095071..5095660 1858..2447 2905 99.5 Plus
chr3R 27901430 chr3R 5094719..5095002 1574..1857 1420 100 Plus
chr3R 27901430 chr3R 5095721..5096001 2448..2728 1390 99.6 Plus
chr3R 27901430 chr3R 5093265..5093536 336..607 1345 99.6 Plus
chr3R 27901430 chr3R 5093020..5093213 143..336 970 100 Plus
chr3R 27901430 chr3R 5094514..5094666 1425..1577 750 99.3 Plus
chr3R 27901430 chr3R 5092809..5092954 1..146 730 100 Plus
chr3R 27901430 chr3R 5094333..5094461 1296..1424 645 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9267810..9268498 608..1296 3445 100 Plus
3R 32079331 3R 9269294..9269883 1858..2447 2950 100 Plus
3R 32079331 3R 9269944..9270236 2448..2740 1435 99.3 Plus
3R 32079331 3R 9268942..9269225 1574..1857 1420 100 Plus
3R 32079331 3R 9267488..9267759 336..607 1360 100 Plus
3R 32079331 3R 9267243..9267436 143..336 970 100 Plus
3R 32079331 3R 9268737..9268889 1425..1577 750 99.3 Plus
3R 32079331 3R 9267032..9267177 1..146 730 100 Plus
3R 32079331 3R 9268556..9268684 1296..1424 645 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9008641..9009329 608..1296 3445 100 Plus
3R 31820162 3R 9010125..9010714 1858..2447 2950 100 Plus
3R 31820162 3R 9010775..9011067 2448..2740 1435 99.3 Plus
3R 31820162 3R 9009773..9010056 1574..1857 1420 100 Plus
3R 31820162 3R 9008319..9008590 336..607 1360 100 Plus
3R 31820162 3R 9008074..9008267 143..336 970 100 Plus
3R 31820162 3R 9009568..9009720 1425..1577 750 99.3 Plus
3R 31820162 3R 9007863..9008008 1..146 730 100 Plus
3R 31820162 3R 9009387..9009515 1296..1424 645 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:04:01 has no hits.

RE66051.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:05:09 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5093024..5093213 147..336 100 -> Plus
chr3R 5092809..5092954 1..146 100 -> Plus
chr3R 5093266..5093536 337..607 99 -> Plus
chr3R 5093587..5094275 608..1296 100 -> Plus
chr3R 5094334..5094461 1297..1424 100 -> Plus
chr3R 5094514..5094662 1425..1573 100 -> Plus
chr3R 5094719..5095002 1574..1857 100 -> Plus
chr3R 5095071..5095660 1858..2447 99 -> Plus
chr3R 5095721..5095974 2448..2701 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:41 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2502 91..2592 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:05 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2502 91..2592 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:26:02 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2502 91..2592 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:40 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2502 91..2592 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:47 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2502 91..2592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:20 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2728 1..2728 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:04 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2728 1..2728 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:02 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 14..2741 1..2728 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:40 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 1..2728 1..2728 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:47 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
Vps16A-RA 14..2741 1..2728 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:09 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9267247..9267436 147..336 100 -> Plus
3R 9267489..9267759 337..607 100 -> Plus
3R 9267032..9267177 1..146 100 -> Plus
3R 9267810..9268498 608..1296 100 -> Plus
3R 9268557..9268684 1297..1424 100 -> Plus
3R 9268737..9268885 1425..1573 100 -> Plus
3R 9268942..9269225 1574..1857 100 -> Plus
3R 9269294..9269883 1858..2447 100 -> Plus
3R 9269944..9270224 2448..2728 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:09 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9267247..9267436 147..336 100 -> Plus
3R 9267489..9267759 337..607 100 -> Plus
3R 9267032..9267177 1..146 100 -> Plus
3R 9267810..9268498 608..1296 100 -> Plus
3R 9268557..9268684 1297..1424 100 -> Plus
3R 9268737..9268885 1425..1573 100 -> Plus
3R 9268942..9269225 1574..1857 100 -> Plus
3R 9269294..9269883 1858..2447 100 -> Plus
3R 9269944..9270224 2448..2728 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:09 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9267247..9267436 147..336 100 -> Plus
3R 9267489..9267759 337..607 100 -> Plus
3R 9267032..9267177 1..146 100 -> Plus
3R 9267810..9268498 608..1296 100 -> Plus
3R 9268557..9268684 1297..1424 100 -> Plus
3R 9268737..9268885 1425..1573 100 -> Plus
3R 9268942..9269225 1574..1857 100 -> Plus
3R 9269294..9269883 1858..2447 100 -> Plus
3R 9269944..9270224 2448..2728 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:02 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5092754..5092899 1..146 100 -> Plus
arm_3R 5092969..5093158 147..336 100 -> Plus
arm_3R 5093211..5093481 337..607 100 -> Plus
arm_3R 5093532..5094220 608..1296 100 -> Plus
arm_3R 5094279..5094406 1297..1424 100 -> Plus
arm_3R 5094459..5094607 1425..1573 100 -> Plus
arm_3R 5094664..5094947 1574..1857 100 -> Plus
arm_3R 5095016..5095605 1858..2447 100 -> Plus
arm_3R 5095666..5095946 2448..2728 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:06:58 Download gff for RE66051.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9008320..9008590 337..607 100 -> Plus
3R 9008641..9009329 608..1296 100 -> Plus
3R 9009388..9009515 1297..1424 100 -> Plus
3R 9009568..9009716 1425..1573 100 -> Plus
3R 9009773..9010056 1574..1857 100 -> Plus
3R 9010125..9010714 1858..2447 100 -> Plus
3R 9010775..9011055 2448..2728 100   Plus
3R 9007863..9008008 1..146 100 -> Plus
3R 9008078..9008267 147..336 100 -> Plus

RE66051.pep Sequence

Translation from 90 to 2591

> RE66051.pep
MPIMYNTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAV
TRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELI
CIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMT
TSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREV
IKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSV
DMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNAD
RSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPAS
YLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSL
LRTAYFGKGFIRNHNPDEYMRIMRILRVLNTLRHERIAMPITFKQFSHLN
TEVILSRLVFRKHYAIAIQVAKHLNLPESWILEHWAYHKVMNDPNDTEVA
RKITEKFKNPSVEGISFCNIASKAHQAGRDDLAIKLLELESRASLHVPLL
LKMRKFDRAVGSATQSGDTELITQVLLEMKMHMMLSNLHMTIRDHPLALN
IYKKIMRESNRAGLYGIYNTEDDQKAIAEYHFQNAIETEGLESNLSMIGN
AYAQGRCTLEAELCADTSRLIKLQKTLSTKYNVSLNGLSIHETIQELLLI
GELKEAERIRSEFKVPDRRFWWLRILTLSSQHKWEELEKLAKSKKSPIGY
DPFVEVCLKQDNVMEARKYIPRCRDNRRVVWYMRANLFNEAIDSAFEQRD
VHSLFELQKNQAIVNNGTLLSKVCDCIAMLEGK*

RE66051.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16588-PA 834 GF16588-PA 1..833 1..833 3882 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16085-PA 833 GG16085-PA 1..833 1..833 4417 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14334-PA 837 GH14334-PA 1..836 1..833 3520 76.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-PA 833 CG8454-PA 1..833 1..833 4357 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10429-PA 836 GI10429-PA 1..835 1..833 3714 80.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13948-PA 832 GL13948-PA 1..831 1..833 3992 87.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21090-PA 834 GA21090-PA 1..833 1..833 4080 88.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23792-PA 833 GM23792-PA 1..833 1..833 4481 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18603-PA 833 GD18603-PA 1..833 1..833 4483 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10645-PA 836 GJ10645-PA 1..835 1..833 3658 79.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22550-PA 832 GK22550-PA 1..828 1..828 3821 83.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25939-PA 833 GE25939-PA 1..833 1..833 4391 96.3 Plus

RE66051.hyp Sequence

Translation from 90 to 2591

> RE66051.hyp
MPIMYNTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAV
TRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELI
CIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMT
TSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREV
IKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSV
DMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNAD
RSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPAS
YLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSL
LRTAYFGKGFIRNHNPDEYMRIMRILRVLNTLRHERIAMPITFKQFSHLN
TEVILSRLVFRKHYAIAIQVAKHLNLPESWILEHWAYHKVMNDPNDTEVA
RKITEKFKNPSVEGISFCNIASKAHQAGRDDLAIKLLELESRASLHVPLL
LKMRKFDRAVGSATQSGDTELITQVLLEMKMHMMLSNLHMTIRDHPLALN
IYKKIMRESNRAGLYGIYNTEDDQKAIAEYHFQNAIETEGLESNLSMIGN
AYAQGRCTLEAELCADTSRLIKLQKTLSTKYNVSLNGLSIHETIQELLLI
GELKEAERIRSEFKVPDRRFWWLRILTLSSQHKWEELEKLAKSKKSPIGY
DPFVEVCLKQDNVMEARKYIPRCRDNRRVVWYMRANLFNEAIDSAFEQRD
VHSLFELQKNQAIVNNGTLLSKVCDCIAMLEGK*

RE66051.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Vps16A-PA 833 CG8454-PA 1..833 1..833 4357 100 Plus