BDGP Sequence Production Resources |
Search the DGRC for RE66051
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 660 |
Well: | 51 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Vps16A-RA |
Protein status: | RE66051.pep: gold |
Preliminary Size: | 2708 |
Sequenced Size: | 2742 |
Gene | Date | Evidence |
---|---|---|
CG8454 | 2001-12-14 | Blastp of sequenced clone |
CG8454 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8454 | 2003-01-01 | Sim4 clustering to Release 3 |
Vps16A | 2008-04-29 | Release 5.5 accounting |
Vps16A | 2008-08-15 | Release 5.9 accounting |
Vps16A | 2008-12-18 | 5.12 accounting |
2742 bp (2742 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071611
> RE66051.complete AGCTGTTGCGCTGCAAACTGTGGGTGAAAAATGCAAGCGGATAAGACTAA TGTTTTTCGATTAAAATAAGGAACTAATAACTCAGACAACATGCCTATCA TGTACAACACGGGGGAGTGGTTCAAGGTGCGACCGGACTACTACAGAAAA GTGGAACTGGCTACGCCTGATTGGCCTCTGGACCTGGACTTGGAGTATAT GTGGGTGGAAGTGGCTCCCTATGGAGGACCACTGGCGGTCACTCGTGATC CGACCAAATTGGTGCCGGTAAAGGGTAACGCTAGACCCATGATTCGCATC TTTGATACCACCGGCAGGGAAATGGGTCACATATTGTGGAACCATGGCAA ACTTATTGCCATGGGCTGGTCAGACATGGAGGAGCTTATCTGCATCCAGG AGAACGCCACCGTCTTTGTCTACGACATGTTTGGTCGGGAAAAGGAGTCC TACAGCATCGGCGATGAGGCCAGTGTCACAAAGATTGTGGAGGGCAAGGT GTTCCAGTCCTCAGCTGGCACAGGAGTGGCTGTAATGACCACATCCGGTC GGGTTTTCCTCAAGCAGAACAGCAGCAAGACTGAAAGAAAGCTGCCGGAT ATTCCCAATTCCAGCATGAACTGTTCCTGCTGGGAGATCGTAACCGAGGG ACGCAACAGCTACTGTCTGCTGGGAAGGGATCGAGAGGTCATAAAGCTGT TTCCAGGCGAAACTGTGGGAACTATTACCGCCAATCTCTTTGAGAAACCG CACGAGCGAATCATAAAGATATCTGTGTCGTACAACCATCAGCACTTGGC ACTGTACACCAACACCGGTCTTCTTTGGCTGGGCAGCGTAGATATGCGGC AAAAGTATTGTGAATTCGACACCGGACGTAAAGATATGCCCCTCCAAATG GAGTGGATCATGAACTCTGACAACAGCGAGGCGGATGCGGTGGTCATTTC ATATCCATCGTACCTCTTAATTGTAAATCGTAACGCTGATCGCAGTGACT TTCCCTACGATCCGGTGATGTTTCTTGTGGCTGAAATGGATGGCGTTCGC ATTATTACTCAGAGTTCGCATGAAATAATACAGCGCCTGCCAAAATGCGT TGAGAACATATTTGCAGTGAATAGCCAGGAACCGGCTAGCTATCTCTTTG AGGCACAGAAAAAGTTTGAGGAGAAGTCCTACAAGTCGGATGAGTATCTC AGCATGTGTCGGGAAAAGATCGATCTGGCAGTGTCCGAATGTATTGAGGC GGCTTCATATGAGTTTTGTCCGGAAACTCAAAAGAGCTTGCTTAGGACGG CCTATTTTGGAAAAGGCTTTATTCGTAACCACAATCCAGATGAATATATG CGTATTATGCGAATACTGAGGGTTCTTAACACCTTGCGGCATGAGCGAAT TGCCATGCCCATCACCTTCAAACAATTCTCACATCTTAATACCGAGGTCA TACTCAGCCGTTTGGTATTCCGCAAACACTATGCCATTGCGATACAAGTG GCCAAGCATTTAAATCTGCCCGAATCGTGGATCTTGGAACACTGGGCTTA CCATAAAGTGATGAATGATCCCAATGATACTGAAGTGGCGCGTAAGATAA CTGAAAAGTTCAAGAATCCGTCGGTCGAGGGAATTTCTTTCTGCAATATT GCGTCAAAGGCGCATCAAGCTGGACGAGATGACCTGGCCATTAAGCTGCT AGAGCTCGAGTCTCGTGCTTCGCTTCACGTACCACTACTTCTGAAGATGC GCAAGTTTGATCGGGCGGTGGGCAGTGCCACACAGTCCGGCGATACAGAG TTGATCACCCAAGTTCTCTTGGAGATGAAAATGCACATGATGCTGTCCAA TTTGCACATGACTATTAGGGACCATCCACTGGCTCTAAACATATACAAAA AGATAATGCGGGAGTCCAACAGAGCTGGACTCTATGGGATTTACAACACC GAAGACGACCAAAAGGCCATCGCTGAGTATCACTTCCAGAATGCCATTGA AACTGAAGGATTGGAGTCGAATCTTTCGATGATTGGAAACGCCTATGCCC AGGGCCGTTGCACATTGGAAGCGGAGCTTTGTGCGGATACCAGCCGATTG ATTAAGCTGCAAAAGACTCTAAGCACCAAGTATAATGTCAGCTTAAATGG CTTGTCAATACATGAGACCATTCAAGAATTACTGCTGATCGGCGAATTGA AAGAGGCAGAGCGAATCAGAAGCGAATTTAAAGTGCCCGATCGTCGGTTC TGGTGGCTACGAATCCTCACACTTTCTAGTCAACACAAGTGGGAGGAGTT GGAAAAGTTAGCTAAAAGTAAAAAGAGCCCCATTGGCTACGATCCTTTTG TTGAGGTCTGCTTAAAACAGGACAATGTAATGGAGGCCCGAAAGTATATA CCAAGGTGTCGGGACAATCGCCGGGTCGTCTGGTATATGCGAGCAAACCT ATTTAACGAAGCCATAGATTCCGCCTTCGAGCAGCGTGATGTGCACAGTC TCTTTGAGTTGCAAAAGAACCAGGCGATCGTTAACAATGGCACACTGTTG AGCAAAGTTTGCGATTGCATTGCCATGCTGGAGGGAAAGTAGTCAAAACA TTCGTATTCATAAACAATTATTCATGTCTATACGAATAGCACTCTTAAGC TTATTCGGTATTGTCAATCAGGACGTGCTCTTGATAAAAGTAATTATGCT CGTAATAAATATAAATTATTTTGTAAATAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps16A-RA | 2818 | Vps16A-RA | 35..2774 | 1..2740 | 13670 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5093587..5094275 | 608..1296 | 3445 | 100 | Plus |
chr3R | 27901430 | chr3R | 5095071..5095660 | 1858..2447 | 2905 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 5094719..5095002 | 1574..1857 | 1420 | 100 | Plus |
chr3R | 27901430 | chr3R | 5095721..5096001 | 2448..2728 | 1390 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 5093265..5093536 | 336..607 | 1345 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 5093020..5093213 | 143..336 | 970 | 100 | Plus |
chr3R | 27901430 | chr3R | 5094514..5094666 | 1425..1577 | 750 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 5092809..5092954 | 1..146 | 730 | 100 | Plus |
chr3R | 27901430 | chr3R | 5094333..5094461 | 1296..1424 | 645 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9267810..9268498 | 608..1296 | 3445 | 100 | Plus |
3R | 32079331 | 3R | 9269294..9269883 | 1858..2447 | 2950 | 100 | Plus |
3R | 32079331 | 3R | 9269944..9270236 | 2448..2740 | 1435 | 99.3 | Plus |
3R | 32079331 | 3R | 9268942..9269225 | 1574..1857 | 1420 | 100 | Plus |
3R | 32079331 | 3R | 9267488..9267759 | 336..607 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 9267243..9267436 | 143..336 | 970 | 100 | Plus |
3R | 32079331 | 3R | 9268737..9268889 | 1425..1577 | 750 | 99.3 | Plus |
3R | 32079331 | 3R | 9267032..9267177 | 1..146 | 730 | 100 | Plus |
3R | 32079331 | 3R | 9268556..9268684 | 1296..1424 | 645 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9008641..9009329 | 608..1296 | 3445 | 100 | Plus |
3R | 31820162 | 3R | 9010125..9010714 | 1858..2447 | 2950 | 100 | Plus |
3R | 31820162 | 3R | 9010775..9011067 | 2448..2740 | 1435 | 99.3 | Plus |
3R | 31820162 | 3R | 9009773..9010056 | 1574..1857 | 1420 | 100 | Plus |
3R | 31820162 | 3R | 9008319..9008590 | 336..607 | 1360 | 100 | Plus |
3R | 31820162 | 3R | 9008074..9008267 | 143..336 | 970 | 100 | Plus |
3R | 31820162 | 3R | 9009568..9009720 | 1425..1577 | 750 | 99.3 | Plus |
3R | 31820162 | 3R | 9007863..9008008 | 1..146 | 730 | 100 | Plus |
3R | 31820162 | 3R | 9009387..9009515 | 1296..1424 | 645 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5093024..5093213 | 147..336 | 100 | -> | Plus |
chr3R | 5092809..5092954 | 1..146 | 100 | -> | Plus |
chr3R | 5093266..5093536 | 337..607 | 99 | -> | Plus |
chr3R | 5093587..5094275 | 608..1296 | 100 | -> | Plus |
chr3R | 5094334..5094461 | 1297..1424 | 100 | -> | Plus |
chr3R | 5094514..5094662 | 1425..1573 | 100 | -> | Plus |
chr3R | 5094719..5095002 | 1574..1857 | 100 | -> | Plus |
chr3R | 5095071..5095660 | 1858..2447 | 99 | -> | Plus |
chr3R | 5095721..5095974 | 2448..2701 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2502 | 91..2592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2502 | 91..2592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2502 | 91..2592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2502 | 91..2592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2502 | 91..2592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2728 | 1..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2728 | 1..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 14..2741 | 1..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 1..2728 | 1..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Vps16A-RA | 14..2741 | 1..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9267247..9267436 | 147..336 | 100 | -> | Plus |
3R | 9267489..9267759 | 337..607 | 100 | -> | Plus |
3R | 9267032..9267177 | 1..146 | 100 | -> | Plus |
3R | 9267810..9268498 | 608..1296 | 100 | -> | Plus |
3R | 9268557..9268684 | 1297..1424 | 100 | -> | Plus |
3R | 9268737..9268885 | 1425..1573 | 100 | -> | Plus |
3R | 9268942..9269225 | 1574..1857 | 100 | -> | Plus |
3R | 9269294..9269883 | 1858..2447 | 100 | -> | Plus |
3R | 9269944..9270224 | 2448..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9267247..9267436 | 147..336 | 100 | -> | Plus |
3R | 9267489..9267759 | 337..607 | 100 | -> | Plus |
3R | 9267032..9267177 | 1..146 | 100 | -> | Plus |
3R | 9267810..9268498 | 608..1296 | 100 | -> | Plus |
3R | 9268557..9268684 | 1297..1424 | 100 | -> | Plus |
3R | 9268737..9268885 | 1425..1573 | 100 | -> | Plus |
3R | 9268942..9269225 | 1574..1857 | 100 | -> | Plus |
3R | 9269294..9269883 | 1858..2447 | 100 | -> | Plus |
3R | 9269944..9270224 | 2448..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9267247..9267436 | 147..336 | 100 | -> | Plus |
3R | 9267489..9267759 | 337..607 | 100 | -> | Plus |
3R | 9267032..9267177 | 1..146 | 100 | -> | Plus |
3R | 9267810..9268498 | 608..1296 | 100 | -> | Plus |
3R | 9268557..9268684 | 1297..1424 | 100 | -> | Plus |
3R | 9268737..9268885 | 1425..1573 | 100 | -> | Plus |
3R | 9268942..9269225 | 1574..1857 | 100 | -> | Plus |
3R | 9269294..9269883 | 1858..2447 | 100 | -> | Plus |
3R | 9269944..9270224 | 2448..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5092754..5092899 | 1..146 | 100 | -> | Plus |
arm_3R | 5092969..5093158 | 147..336 | 100 | -> | Plus |
arm_3R | 5093211..5093481 | 337..607 | 100 | -> | Plus |
arm_3R | 5093532..5094220 | 608..1296 | 100 | -> | Plus |
arm_3R | 5094279..5094406 | 1297..1424 | 100 | -> | Plus |
arm_3R | 5094459..5094607 | 1425..1573 | 100 | -> | Plus |
arm_3R | 5094664..5094947 | 1574..1857 | 100 | -> | Plus |
arm_3R | 5095016..5095605 | 1858..2447 | 100 | -> | Plus |
arm_3R | 5095666..5095946 | 2448..2728 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9008320..9008590 | 337..607 | 100 | -> | Plus |
3R | 9008641..9009329 | 608..1296 | 100 | -> | Plus |
3R | 9009388..9009515 | 1297..1424 | 100 | -> | Plus |
3R | 9009568..9009716 | 1425..1573 | 100 | -> | Plus |
3R | 9009773..9010056 | 1574..1857 | 100 | -> | Plus |
3R | 9010125..9010714 | 1858..2447 | 100 | -> | Plus |
3R | 9010775..9011055 | 2448..2728 | 100 | Plus | |
3R | 9007863..9008008 | 1..146 | 100 | -> | Plus |
3R | 9008078..9008267 | 147..336 | 100 | -> | Plus |
Translation from 90 to 2591
> RE66051.pep MPIMYNTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAV TRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELI CIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMT TSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREV IKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSV DMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNAD RSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPAS YLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSL LRTAYFGKGFIRNHNPDEYMRIMRILRVLNTLRHERIAMPITFKQFSHLN TEVILSRLVFRKHYAIAIQVAKHLNLPESWILEHWAYHKVMNDPNDTEVA RKITEKFKNPSVEGISFCNIASKAHQAGRDDLAIKLLELESRASLHVPLL LKMRKFDRAVGSATQSGDTELITQVLLEMKMHMMLSNLHMTIRDHPLALN IYKKIMRESNRAGLYGIYNTEDDQKAIAEYHFQNAIETEGLESNLSMIGN AYAQGRCTLEAELCADTSRLIKLQKTLSTKYNVSLNGLSIHETIQELLLI GELKEAERIRSEFKVPDRRFWWLRILTLSSQHKWEELEKLAKSKKSPIGY DPFVEVCLKQDNVMEARKYIPRCRDNRRVVWYMRANLFNEAIDSAFEQRD VHSLFELQKNQAIVNNGTLLSKVCDCIAMLEGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16588-PA | 834 | GF16588-PA | 1..833 | 1..833 | 3882 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16085-PA | 833 | GG16085-PA | 1..833 | 1..833 | 4417 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14334-PA | 837 | GH14334-PA | 1..836 | 1..833 | 3520 | 76.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps16A-PA | 833 | CG8454-PA | 1..833 | 1..833 | 4357 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10429-PA | 836 | GI10429-PA | 1..835 | 1..833 | 3714 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13948-PA | 832 | GL13948-PA | 1..831 | 1..833 | 3992 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21090-PA | 834 | GA21090-PA | 1..833 | 1..833 | 4080 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23792-PA | 833 | GM23792-PA | 1..833 | 1..833 | 4481 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18603-PA | 833 | GD18603-PA | 1..833 | 1..833 | 4483 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10645-PA | 836 | GJ10645-PA | 1..835 | 1..833 | 3658 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22550-PA | 832 | GK22550-PA | 1..828 | 1..828 | 3821 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25939-PA | 833 | GE25939-PA | 1..833 | 1..833 | 4391 | 96.3 | Plus |
Translation from 90 to 2591
> RE66051.hyp MPIMYNTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAV TRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELI CIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMT TSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREV IKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSV DMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNAD RSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPAS YLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSL LRTAYFGKGFIRNHNPDEYMRIMRILRVLNTLRHERIAMPITFKQFSHLN TEVILSRLVFRKHYAIAIQVAKHLNLPESWILEHWAYHKVMNDPNDTEVA RKITEKFKNPSVEGISFCNIASKAHQAGRDDLAIKLLELESRASLHVPLL LKMRKFDRAVGSATQSGDTELITQVLLEMKMHMMLSNLHMTIRDHPLALN IYKKIMRESNRAGLYGIYNTEDDQKAIAEYHFQNAIETEGLESNLSMIGN AYAQGRCTLEAELCADTSRLIKLQKTLSTKYNVSLNGLSIHETIQELLLI GELKEAERIRSEFKVPDRRFWWLRILTLSSQHKWEELEKLAKSKKSPIGY DPFVEVCLKQDNVMEARKYIPRCRDNRRVVWYMRANLFNEAIDSAFEQRD VHSLFELQKNQAIVNNGTLLSKVCDCIAMLEGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Vps16A-PA | 833 | CG8454-PA | 1..833 | 1..833 | 4357 | 100 | Plus |