![]() | BDGP Sequence Production Resources |
Search the DGRC for RE66104
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 661 |
Well: | 4 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Nca-RA |
Protein status: | RE66104.pep: gold |
Sequenced Size: | 879 |
Gene | Date | Evidence |
---|---|---|
CG7641 | 2001-12-14 | Blastp of sequenced clone |
CG7641 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7646 | 2002-01-01 | Sim4 clustering to Release 2 |
Nca | 2008-04-29 | Release 5.5 accounting |
Nca | 2008-08-15 | Release 5.9 accounting |
CG7646 | 2008-08-15 | Release 5.9 accounting |
Nca | 2008-12-18 | 5.12 accounting |
CG7646 | 2008-12-18 | 5.12 accounting |
879 bp (879 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071612
> RE66104.complete AAATTTGTTGTATTGATTGTGTTTTGGTCGAATAAGTTTATTGCATTTGC GAAAAGTGATTTTGTTTAGCCTAGCGGGTAGCAGAAATGTGCCTAAAATC AATGTGTCATTTTCGTTCAGCATATTAGCCTCAGTAGGTAAATAATGCTT TGACTTGGTCGACGGAAATCAAACTGATATAACTGTATAATGAAATTGTT CTGCAACAATGGGAAAGCAAAATAGTAAACTAAAACCAGAAGTTTTGGAG GATCTCAAGCAAAACACAGAGTTCACAGACGCTGAGATTCAAGAATGGTA TAAAGGCTTTCTTAAGGACTGCCCTAGTGGGCATTTATCAGTAGAAGAGT TTAAAAAGATTTATGGGAACTTTTTCCCATATGGTGACGCTAGCAAGTTT GCAGAGCATGTCTTCCGGACATTCGACGCCAACGGCGATGGCACTATAGA CTTTAGAGAGTTCTTGTGTGCACTAAGTGTCACATCGCGGGGCAAACTCG AGCAGAAACTCAAATGGGCATTCTCAATGTACGATCTTGATGGGAACGGA TACATATCGCGGCAGGAAATGCTAGAAATTGTTACAGCAATATATAAAAT GGTCGGCTCGGTGATGAAAATGCCAGAGGACGAGAGTACTCCTGAGAAAC GAACCGACAAGATTTTTCGTCAAATGGATCGAAACAAGGATGGGAAATTA AGCTTGGAAGAGTTCATAGAAGGAGCCAAAAGTGATCCATCAATAGTACG ATTATTACAGTGTGATCCACAGTCTCATTAACTTAATTACTATTGAAAAG CAAGCAATAATCATTTAAACGTGTATAGAGTAATTGCGAATTAAATTGTT TTGTTTCAGTATGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 19986607..19986883 | 587..863 | 1385 | 100 | Plus |
chr3L | 24539361 | chr3L | 19986344..19986535 | 396..587 | 960 | 100 | Plus |
chr3L | 24539361 | chr3L | 19986163..19986283 | 277..397 | 605 | 100 | Plus |
chr3L | 24539361 | chr3L | 19981241..19981360 | 1..120 | 600 | 100 | Plus |
chr3L | 24539361 | chr3L | 19985996..19986095 | 179..278 | 500 | 100 | Plus |
chr3L | 24539361 | chr3L | 19982575..19982641 | 116..182 | 320 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 19997292..19997568 | 587..863 | 1385 | 100 | Plus |
3L | 28110227 | 3L | 19997029..19997220 | 396..587 | 960 | 100 | Plus |
3L | 28110227 | 3L | 19996848..19996968 | 277..397 | 605 | 100 | Plus |
3L | 28110227 | 3L | 19991923..19992042 | 1..120 | 600 | 100 | Plus |
3L | 28110227 | 3L | 19996681..19996780 | 179..278 | 500 | 100 | Plus |
3L | 28110227 | 3L | 19993260..19993326 | 116..182 | 320 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 19990392..19990668 | 587..863 | 1385 | 100 | Plus |
3L | 28103327 | 3L | 19990129..19990320 | 396..587 | 960 | 100 | Plus |
3L | 28103327 | 3L | 19989948..19990068 | 277..397 | 605 | 100 | Plus |
3L | 28103327 | 3L | 19985023..19985142 | 1..120 | 600 | 100 | Plus |
3L | 28103327 | 3L | 19989781..19989880 | 179..278 | 500 | 100 | Plus |
3L | 28103327 | 3L | 19986360..19986426 | 116..182 | 320 | 98.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 19981241..19981360 | 1..120 | 100 | -> | Plus |
chr3L | 19982580..19982637 | 121..178 | 100 | -> | Plus |
chr3L | 19985996..19986095 | 179..278 | 100 | -> | Plus |
chr3L | 19986165..19986283 | 279..397 | 100 | -> | Plus |
chr3L | 19986346..19986534 | 398..586 | 100 | -> | Plus |
chr3L | 19986607..19986883 | 587..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 1..573 | 209..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RB | 1..573 | 209..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 1..573 | 209..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 1..573 | 209..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 1..573 | 209..781 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 1..858 | 1..858 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RB | 1..863 | 1..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 37..899 | 1..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 1..858 | 1..858 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Nca-RA | 37..899 | 1..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19991923..19992042 | 1..120 | 100 | -> | Plus |
3L | 19993265..19993322 | 121..178 | 100 | -> | Plus |
3L | 19996681..19996780 | 179..278 | 100 | -> | Plus |
3L | 19996850..19996968 | 279..397 | 100 | -> | Plus |
3L | 19997031..19997219 | 398..586 | 100 | -> | Plus |
3L | 19997292..19997568 | 587..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19991923..19992042 | 1..120 | 100 | -> | Plus |
3L | 19993265..19993322 | 121..178 | 100 | -> | Plus |
3L | 19996681..19996780 | 179..278 | 100 | -> | Plus |
3L | 19996850..19996968 | 279..397 | 100 | -> | Plus |
3L | 19997031..19997219 | 398..586 | 100 | -> | Plus |
3L | 19997292..19997568 | 587..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19991923..19992042 | 1..120 | 100 | -> | Plus |
3L | 19993265..19993322 | 121..178 | 100 | -> | Plus |
3L | 19996681..19996780 | 179..278 | 100 | -> | Plus |
3L | 19996850..19996968 | 279..397 | 100 | -> | Plus |
3L | 19997031..19997219 | 398..586 | 100 | -> | Plus |
3L | 19997292..19997568 | 587..863 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 19990392..19990668 | 587..863 | 100 | Plus | |
arm_3L | 19985023..19985142 | 1..120 | 100 | -> | Plus |
arm_3L | 19986365..19986422 | 121..178 | 100 | -> | Plus |
arm_3L | 19989781..19989880 | 179..278 | 100 | -> | Plus |
arm_3L | 19989950..19990068 | 279..397 | 100 | -> | Plus |
arm_3L | 19990131..19990319 | 398..586 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 19990392..19990668 | 587..863 | 100 | Plus | |
3L | 19985023..19985142 | 1..120 | 100 | -> | Plus |
3L | 19986365..19986422 | 121..178 | 100 | -> | Plus |
3L | 19989781..19989880 | 179..278 | 100 | -> | Plus |
3L | 19989950..19990068 | 279..397 | 100 | -> | Plus |
3L | 19990131..19990319 | 398..586 | 100 | -> | Plus |
Translation from 208 to 780
> RE66104.hyp MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKK IYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK LKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTD KIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQSH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nca-PA | 190 | CG7641-PA | 1..190 | 1..190 | 1002 | 100 | Plus |
Frq1-PE | 187 | CG5744-PE | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PD | 187 | CG5744-PD | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PC | 187 | CG5744-PC | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PB | 187 | CG5744-PB | 1..182 | 1..183 | 582 | 60.1 | Plus |
Translation from 208 to 780
> RE66104.pep MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKK IYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQK LKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTD KIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQSH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23611-PA | 233 | GF23611-PA | 1..175 | 1..175 | 929 | 99.4 | Plus |
Dana\GF22427-PA | 187 | GF22427-PA | 1..182 | 1..183 | 584 | 60.1 | Plus |
Dana\GF22428-PA | 187 | GF22428-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dana\GF23610-PA | 186 | GF23610-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dana\GF16777-PA | 206 | GF16777-PA | 26..200 | 10..184 | 423 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16076-PA | 190 | GG16076-PA | 1..190 | 1..190 | 1018 | 100 | Plus |
Dere\GG19154-PA | 187 | GG19154-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dere\GG19152-PA | 220 | GG19152-PA | 50..215 | 18..183 | 540 | 61.7 | Plus |
Dere\GG16075-PA | 186 | GG16075-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dere\GG11429-PA | 206 | GG11429-PA | 26..200 | 10..184 | 423 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14390-PA | 190 | GH14390-PA | 1..190 | 1..190 | 1011 | 98.9 | Plus |
Dgri\GH17717-PA | 187 | GH17717-PA | 1..182 | 1..183 | 584 | 60.1 | Plus |
Dgri\GH17718-PA | 187 | GH17718-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dgri\GH14389-PA | 186 | GH14389-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dgri\GH22305-PA | 206 | GH22305-PA | 26..200 | 10..184 | 424 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nca-PA | 190 | CG7641-PA | 1..190 | 1..190 | 1002 | 100 | Plus |
Frq1-PE | 187 | CG5744-PE | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PD | 187 | CG5744-PD | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PC | 187 | CG5744-PC | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq1-PB | 187 | CG5744-PB | 1..182 | 1..183 | 582 | 60.1 | Plus |
Frq2-PD | 187 | CG5907-PD | 1..182 | 1..183 | 574 | 59.6 | Plus |
Frq2-PC | 187 | CG5907-PC | 1..182 | 1..183 | 574 | 59.6 | Plus |
Frq2-PB | 187 | CG5907-PB | 1..182 | 1..183 | 574 | 59.6 | Plus |
Frq2-PA | 187 | CG5907-PA | 1..182 | 1..183 | 574 | 59.6 | Plus |
CG7646-PC | 186 | CG7646-PC | 1..184 | 1..183 | 451 | 49.5 | Plus |
CG7646-PA | 186 | CG7646-PA | 1..184 | 1..183 | 451 | 49.5 | Plus |
CG5890-PD | 206 | CG5890-PD | 26..200 | 10..184 | 413 | 42.9 | Plus |
CG5890-PC | 206 | CG5890-PC | 26..200 | 10..184 | 413 | 42.9 | Plus |
CG5890-PA | 206 | CG5890-PA | 26..200 | 10..184 | 413 | 42.9 | Plus |
CG44422-PE | 363 | CG44422-PE | 178..354 | 6..181 | 401 | 40.7 | Plus |
CG44422-PB | 436 | CG44422-PB | 251..427 | 6..181 | 401 | 40.7 | Plus |
CG44422-PC | 450 | CG44422-PC | 265..441 | 6..181 | 401 | 40.7 | Plus |
CG44422-PF | 673 | CG44422-PF | 178..354 | 6..181 | 401 | 40.7 | Plus |
CG44422-PA | 746 | CG44422-PA | 251..427 | 6..181 | 401 | 40.7 | Plus |
CG44422-PD | 439 | CG44422-PD | 251..430 | 6..181 | 398 | 40 | Plus |
CanB-PB | 170 | CG4209-PB | 35..153 | 40..169 | 187 | 35.1 | Plus |
CanB-PA | 170 | CG4209-PA | 35..153 | 40..169 | 187 | 35.1 | Plus |
CanB2-PB | 170 | CG11217-PB | 35..153 | 40..169 | 186 | 35.1 | Plus |
CanB2-PA | 170 | CG11217-PA | 35..153 | 40..169 | 186 | 35.1 | Plus |
CG7646-PB | 78 | CG7646-PB | 1..76 | 107..183 | 163 | 44.9 | Plus |
CG2256-PC | 324 | CG2256-PC | 101..310 | 1..187 | 162 | 24.1 | Plus |
Nox-PB | 1282 | CG34399-PB | 350..462 | 46..167 | 157 | 31.1 | Plus |
Nox-PE | 1340 | CG34399-PE | 350..462 | 46..167 | 157 | 31.1 | Plus |
Nox-PD | 1340 | CG34399-PD | 350..462 | 46..167 | 157 | 31.1 | Plus |
Nox-PC | 1340 | CG34399-PC | 350..462 | 46..167 | 157 | 31.1 | Plus |
elm-PB | 189 | CG2185-PB | 1..170 | 1..169 | 155 | 31.5 | Plus |
elm-PA | 189 | CG2185-PA | 1..170 | 1..169 | 155 | 31.5 | Plus |
Cam-PD | 149 | CG8472-PD | 4..143 | 18..170 | 150 | 27.9 | Plus |
Cam-PC | 149 | CG8472-PC | 4..143 | 18..170 | 150 | 27.9 | Plus |
Cam-PE | 149 | CG8472-PE | 4..143 | 18..170 | 150 | 27.9 | Plus |
Cam-PB | 149 | CG8472-PB | 4..143 | 18..170 | 150 | 27.9 | Plus |
Cam-PA | 149 | CG8472-PA | 4..143 | 18..170 | 150 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11334-PA | 190 | GI11334-PA | 1..190 | 1..190 | 1011 | 98.9 | Plus |
Dmoj\GI15466-PA | 187 | GI15466-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dmoj\GI15464-PA | 188 | GI15464-PA | 1..183 | 1..183 | 508 | 54.9 | Plus |
Dmoj\GI11333-PA | 186 | GI11333-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dmoj\GI22974-PA | 206 | GI22974-PA | 26..200 | 10..184 | 426 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11894-PA | 190 | GL11894-PA | 1..190 | 1..190 | 1018 | 100 | Plus |
Dper\GL26964-PA | 187 | GL26964-PA | 1..182 | 1..183 | 584 | 60.1 | Plus |
Dper\GL26965-PA | 187 | GL26965-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dper\GL11893-PA | 186 | GL11893-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dper\GL21539-PA | 206 | GL21539-PA | 26..200 | 10..184 | 423 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19219-PA | 187 | GA19219-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dpse\GA19207-PA | 206 | GA19207-PA | 26..200 | 10..184 | 423 | 42.9 | Plus |
Dpse\GA10762-PA | 195 | GA10762-PA | 10..190 | 6..185 | 402 | 39.8 | Plus |
Dpse\GA22326-PA | 101 | GA22326-PA | 1..76 | 1..76 | 228 | 56.6 | Plus |
Dpse\GA18033-PA | 170 | GA18033-PA | 35..153 | 40..169 | 187 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19732-PA | 190 | GM19732-PA | 1..190 | 1..190 | 1018 | 100 | Plus |
Dsec\GM22886-PA | 187 | GM22886-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dsec\GM19731-PA | 186 | GM19731-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dsec\GM10270-PA | 206 | GM10270-PA | 26..200 | 10..184 | 423 | 42.9 | Plus |
Dsec\GM22884-PA | 106 | GM22884-PA | 22..101 | 103..183 | 271 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14847-PA | 190 | GD14847-PA | 1..190 | 1..190 | 1018 | 100 | Plus |
Dsim\GD24850-PA | 187 | GD24850-PA | 1..185 | 1..186 | 585 | 59.1 | Plus |
Dsim\GD24687-PA | 197 | GD24687-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dsim\GD14846-PA | 186 | GD14846-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dsim\GD21239-PA | 206 | GD21239-PA | 26..200 | 10..184 | 423 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11590-PA | 190 | GJ11590-PA | 1..190 | 1..190 | 1008 | 98.4 | Plus |
Dvir\GJ19176-PA | 187 | GJ19176-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dvir\GJ11589-PA | 186 | GJ11589-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dvir\GJ19175-PA | 148 | GJ19175-PA | 1..136 | 1..136 | 427 | 57.4 | Plus |
Dvir\GJ22734-PA | 206 | GJ22734-PA | 26..200 | 10..184 | 420 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20284-PA | 190 | GK20284-PA | 1..190 | 1..190 | 1015 | 99.5 | Plus |
Dwil\GK19999-PA | 187 | GK19999-PA | 1..182 | 1..183 | 584 | 60.1 | Plus |
Dwil\GK20001-PA | 251 | GK20001-PA | 65..246 | 1..183 | 579 | 59.6 | Plus |
Dwil\GK20281-PA | 186 | GK20281-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |
Dwil\GK12862-PA | 206 | GK12862-PA | 26..200 | 10..184 | 424 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19642-PA | 190 | GE19642-PA | 1..190 | 1..190 | 1018 | 100 | Plus |
Dyak\GE23224-PA | 190 | GE23224-PA | 1..190 | 1..190 | 1018 | 100 | Plus |
Dyak\GE17711-PA | 187 | GE17711-PA | 1..182 | 1..183 | 584 | 60.1 | Plus |
Dyak\GE17713-PA | 187 | GE17713-PA | 1..182 | 1..183 | 578 | 59.6 | Plus |
Dyak\GE19641-PA | 186 | GE19641-PA | 1..184 | 1..183 | 452 | 49.5 | Plus |