Clone RE66133 Report

Search the DGRC for RE66133

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:661
Well:33
Vector:pFlc-1
Associated Gene/TranscriptCG12963-RB
Protein status:RE66133.pep: wuzgold
Sequenced Size:1194

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12963 2004-03-31 Blastp of sequenced clone
CG12963 2008-04-29 Release 5.5 accounting
CG12963 2008-08-15 Release 5.9 accounting
CG12963 2008-12-18 5.12 accounting

Clone Sequence Records

RE66133.complete Sequence

1194 bp (1194 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012448

> RE66133.complete
ACTTTTTGGCCAGTCTTCGAGAATTGCGGAATGGGTCTGACAGCTAATCT
GAGCGTCGCGCTGGGCTTTGTGTTTTGCATGTTCGCGGTGGCCCAGCTTA
TATACCTGGCCAAGCGAATGCACGACTCAAGGATTCGAAATCGTCGCCAG
ATACAAGCTGGTATGGAACATAGCCCATTTGGGTCACACTGGTAGAAATA
TTATCCTCAAAAGTGTTTATTGTGTGTGTGAAATTTGGAGTGCTAATATG
ACTAATCAACTCGTTTTTAGAAGCCCATTTAAAATGTGCTTATCAGGTCG
TGTTTAGAGCAGTGTTTCCAATTTTAATTAATTAACGAATAACAAGGTTG
TTGTGTGGGTTAATCAAACTGCACATATACAAATATTTCGAAGTGTATAA
AACAACTCTCCTTTAAATGACATTACCCAAATATCAATATGATGTAATCA
AGTAATCTTTAATTAAATTCTTATCATTCGTCCTATGAGTTTTATATGTT
TAAAGACTTCACTATTCACTATTCACTACTCACTTATTTTTCTTAACCTA
TTTTCAGATCGTAATGTATTCAACGCACAGGAGGATCCTTCATCGAACCG
CTATGGCGACATTTTCTTCATCGAACCCGGCAGCGTGGAGGCCAACCGCA
TTCGCGATCAACTGGAAAAGGATGAAAAGGATTTACCCAGCTACGACGAG
GTGATGCGCATGTGTAACCTGACCACTCCCACAGCAGCAGCGGCTGGAAT
GCCTGTTCCCCAATCGCCCCTCGGTGTACCCAGTCCCATTGGAATCGCGG
CACTGCCGGCGCCACCGTATTCGGAGACAGATCCACATTCCTCGTCCGCC
GCAGAAGCCACTGTCATCGCAATGGAACCGATGGAGCCATCCACCTCCCG
CGCGGCACAGATTCCACCCAGCTCCGGATCTGGTCCTCCTGCTCCATTGC
CAACGACAGCGGTGTGATCCGTCGGAGGCATGGATAAATTGGAACTGAAG
CATTCGCCGTGCCACTCTGGGCCACACAGATGCCACTTTGTGTGCGCTTT
CAGTACAGAAATGAACTTGTGTGATCTTATTGAGTACATACCTATTTAAG
TTCTAGACATTAGGAGTCGCATATTGTAAATATATATTTTTAGGACATAG
GATGAAAATTAAAGTGAATTATTTAATTGAAAAAAAAAAAAAAA

RE66133.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963.k 1539 CG12963.k 361..1539 1..1179 5895 100 Plus
CG12963-RB 1228 CG12963-RB 50..1228 1..1179 5895 100 Plus
CG12963.h 1741 CG12963.h 563..1741 1..1179 5895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11448515..11449588 106..1179 5280 99.4 Plus
chr2R 21145070 chr2R 11448328..11448432 1..105 495 98.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15561363..15562440 106..1183 5390 100 Plus
2R 25286936 2R 15561176..15561280 1..105 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15562562..15563639 106..1183 5390 100 Plus
2R 25260384 2R 15562375..15562479 1..105 525 100 Plus
Blast to na_te.dros performed 2019-03-16 23:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3427..3468 671..630 111 73.8 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 830..874 360..405 110 73.9 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 1131..1175 360..405 110 73.9 Plus

RE66133.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:35:21 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11448328..11448432 1..105 98 -> Plus
chr2R 11448515..11449588 106..1179 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:31:44 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..483 485..967 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:35 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..483 485..967 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:21:22 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 123..543 547..967 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:21 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..483 485..967 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:04 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 123..543 547..967 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:17 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..1179 1..1179 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:35 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..1179 1..1179 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:21:22 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..821 547..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:21 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..1179 1..1179 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:04 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..821 547..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:21 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15561363..15562436 106..1179 100   Plus
2R 15561176..15561280 1..105 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:21 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15561363..15562436 106..1179 100   Plus
2R 15561176..15561280 1..105 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:21 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15561363..15562436 106..1179 100   Plus
2R 15561176..15561280 1..105 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:21:22 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11448681..11448785 1..105 100 -> Plus
arm_2R 11448868..11449941 106..1179 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:58:47 Download gff for RE66133.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15562562..15563635 106..1179 100   Plus
2R 15562375..15562479 1..105 100 -> Plus

RE66133.pep Sequence

Translation from 484 to 966

> RE66133.pep
MSFICLKTSLFTIHYSLIFLNLFSDRNVFNAQEDPSSNRYGDIFFIEPGS
VEANRIRDQLEKDEKDLPSYDEVMRMCNLTTPTAAAAGMPVPQSPLGVPS
PIGIAALPAPPYSETDPHSSSAAEATVIAMEPMEPSTSRAAQIPPSSGSG
PPAPLPTTAV*

RE66133.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11144-PA 191 GF11144-PA 26..173 3..143 437 64.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20536-PA 307 GG20536-PA 172..307 26..160 548 87.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19971-PA 172 GH19971-PA 56..164 30..140 248 55 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PM 176 CG12963-PM 37..176 21..160 714 98.6 Plus
CG12963-PC 178 CG12963-PC 42..178 24..160 710 100 Plus
CG12963-PG 213 CG12963-PG 73..213 20..160 710 97.2 Plus
CG12963-PL 169 CG12963-PL 9..169 1..160 708 88.2 Plus
CG12963-PJ 179 CG12963-PJ 43..179 24..160 707 99.3 Plus
CG12963-PD 186 CG12963-PD 50..186 24..160 707 99.3 Plus
CG12963-PA 190 CG12963-PA 43..190 13..160 707 91.9 Plus
CG12963-PH 197 CG12963-PH 61..197 24..160 707 99.3 Plus
CG12963-PN 180 CG12963-PN 45..180 25..160 706 100 Plus
CG12963-PK 200 CG12963-PK 65..200 25..160 706 100 Plus
CG12963-PE 203 CG12963-PE 68..203 25..160 706 100 Plus
CG12963-PF 208 CG12963-PF 73..208 25..160 706 100 Plus
CG12963-PI 179 CG12963-PI 43..179 24..160 703 99.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20257-PA 258 GI20257-PA 147..256 38..143 288 67 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20080-PA 201 GL20080-PA 26..196 3..159 373 58.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11943-PA 201 GA11943-PA 26..196 3..159 389 58.3 Plus
Dpse\GA11943-PH 204 GA11943-PH 29..199 3..159 389 58.3 Plus
Dpse\GA11943-PG 180 GA11943-PG 11..175 3..159 387 58.2 Plus
Dpse\GA11943-PF 193 GA11943-PF 53..188 29..159 387 65.7 Plus
Dpse\GA11943-PE 190 GA11943-PE 15..185 3..159 386 56.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21627-PA 190 GM21627-PA 26..190 3..160 666 81.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11129-PA 190 GD11129-PA 26..190 3..160 679 82.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20211-PA 171 GJ20211-PA 44..170 18..144 335 60.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23031-PA 206 GK23031-PA 43..192 13..149 326 56 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11720-PA 424 GE11720-PA 289..424 25..160 544 89 Plus

RE66133.hyp Sequence

Translation from 484 to 966

> RE66133.hyp
MSFICLKTSLFTIHYSLIFLNLFSDRNVFNAQEDPSSNRYGDIFFIEPGS
VEANRIRDQLEKDEKDLPSYDEVMRMCNLTTPTAAAAGMPVPQSPLGVPS
PIGIAALPAPPYSETDPHSSSAAEATVIAMEPMEPSTSRAAQIPPSSGSG
PPAPLPTTAV*

RE66133.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PM 176 CG12963-PM 37..176 21..160 714 98.6 Plus
CG12963-PC 178 CG12963-PC 42..178 24..160 710 100 Plus
CG12963-PG 213 CG12963-PG 73..213 20..160 710 97.2 Plus
CG12963-PL 169 CG12963-PL 9..169 1..160 708 88.2 Plus
CG12963-PJ 179 CG12963-PJ 43..179 24..160 707 99.3 Plus