BDGP Sequence Production Resources |
Search the DGRC for RE66244
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 662 |
Well: | 44 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mex1-RA |
Protein status: | RE66244.pep: gold |
Preliminary Size: | 530 |
Sequenced Size: | 722 |
Gene | Date | Evidence |
---|---|---|
CG7936 | 2001-12-14 | Blastp of sequenced clone |
CG7936 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7936 | 2003-01-01 | Sim4 clustering to Release 3 |
mex1 | 2008-04-29 | Release 5.5 accounting |
mex1 | 2008-08-15 | Release 5.9 accounting |
mex1 | 2008-12-18 | 5.12 accounting |
722 bp (722 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071615
> RE66244.complete GGTTAATATTTTGTGTTGGTCAACCACGCATCGGGAATCGGAAATATACT GTACAGTATATCTATCTATAATAGAATAACCCAAAAAAGTCATCACCATG TGCAACGCTCTCTGTGAATGCCTCAAATGTCCCGGCAAAGTGGTTTGCTG CTGCTGTTCCTGCGCCTGCAAGATGCTCCTGAGCATCGTGTTTTCTGCGC TCCTGATGGTCGTGGTGATCGGCTTGATTGTCTACTTCACGGTCTTCTAT CACAAGGATAAGAACACGGATGAGGTGCAGAAGCAGGTCGCCCAACTGAC GCCCATTGTGAAGCGCAGCATACGCGACTACTTCAACAAGGAGTACTGAT CTGAGGACATGAATTTATACTATAGGCCATATTAATAATAACTCCGTCGA AATCGAAATTGAAACGAACTAAGAACCAAAGCCGTTCAGTGCATGACTTA ATCTAATCGCGTCGGATGCTCGTTATGGGATTTTTTCTTATCTATAGATA GTTTGGGACTCAATTGAATGGGCAATTTGTGCGTTCTTTAGAAAGGTAGA TAATGTTGGAGCGGCAAAAAATGTGACTCACTGTATACCTTACAATACAT TTTGAACTCGAAACCCAGTAAAGCATTCACAATATATATTTAATGTATAA TATGTATGAATGTAAGGCAGATTAAAAAAGTTATATTGTACTGGATGACA CACTATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 15510557..15511134 | 722..145 | 2815 | 99.1 | Minus |
3L | 28103327 | 3L | 15511408..15511556 | 150..2 | 745 | 100 | Minus |
3L | 28103327 | 3L | 15512557..15512615 | 150..92 | 175 | 86.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 219..145 | 111 | 62.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15507416..15507971 | 151..706 | 99 | <- | Minus |
chr3L | 15508246..15508394 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..252 | 98..349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..252 | 98..349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..252 | 98..349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..252 | 98..349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..252 | 98..349 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..705 | 2..706 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..705 | 2..706 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 5..710 | 1..706 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 1..705 | 2..706 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mex1-RA | 5..710 | 1..706 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15517473..15518028 | 151..706 | 100 | <- | Minus |
3L | 15518308..15518456 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15517473..15518028 | 151..706 | 100 | <- | Minus |
3L | 15518308..15518456 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15517473..15518028 | 151..706 | 100 | <- | Minus |
3L | 15518308..15518456 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15510573..15511128 | 151..706 | 100 | <- | Minus |
arm_3L | 15511408..15511556 | 1..150 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15510573..15511128 | 151..706 | 100 | <- | Minus |
3L | 15511408..15511556 | 1..150 | 99 | Minus |
Translation from 97 to 348
> RE66244.pep MCNALCECLKCPGKVVCCCCSCACKMLLSIVFSALLMVVVIGLIVYFTVF YHKDKNTDEVQKQVAQLTPIVKRSIRDYFNKEY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10729-PA | 83 | GF10729-PA | 1..83 | 1..83 | 350 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13544-PA | 83 | GG13544-PA | 1..83 | 1..83 | 416 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23377-PA | 82 | GH23377-PA | 1..82 | 1..83 | 275 | 73.5 | Plus |
Dgri\GH17020-PA | 82 | GH17020-PA | 1..82 | 1..83 | 275 | 73.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mex1-PC | 83 | CG7936-PC | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PA | 83 | CG7936-PA | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PB | 83 | CG7936-PB | 1..83 | 1..83 | 447 | 97.6 | Plus |
CG42394-PC | 77 | CG42394-PC | 1..75 | 5..81 | 149 | 36.4 | Plus |
CG42394-PB | 77 | CG42394-PB | 1..75 | 5..81 | 149 | 36.4 | Plus |
CG42394-PD | 77 | CG42394-PD | 1..75 | 5..81 | 149 | 36.4 | Plus |
CG42394-PA | 77 | CG42394-PA | 1..75 | 5..81 | 149 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12225-PA | 82 | GI12225-PA | 1..82 | 1..83 | 314 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20701-PA | 83 | GA20701-PA | 1..83 | 1..83 | 274 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24487-PA | 83 | GM24487-PA | 1..83 | 1..83 | 425 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12559-PA | 83 | GD12559-PA | 1..83 | 1..83 | 425 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11455-PA | 82 | GJ11455-PA | 1..81 | 1..82 | 264 | 73.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10522-PA | 81 | GK10522-PA | 1..81 | 1..83 | 226 | 66.3 | Plus |
Translation from 97 to 348
> RE66244.hyp MCNALCECLKCPGKVVCCCCSCACKMLLSIVFSALLMVVVIGLIVYFTVF YHKDKNTDEVQKQVAQLTPIVKRSIRDYFNKEY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mex1-PC | 83 | CG7936-PC | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PA | 83 | CG7936-PA | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PB | 83 | CG7936-PB | 1..83 | 1..83 | 447 | 97.6 | Plus |
CG42394-PC | 77 | CG42394-PC | 1..75 | 5..81 | 149 | 36.4 | Plus |
CG42394-PB | 77 | CG42394-PB | 1..75 | 5..81 | 149 | 36.4 | Plus |