BDGP Sequence Production Resources |
Search the DGRC for RE66324
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 663 |
Well: | 24 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Traf-like-RA |
Protein status: | RE66324.pep: gold |
Sequenced Size: | 2261 |
Gene | Date | Evidence |
---|---|---|
Traf-like-RA | 2010-11-11 | Gleaning Pick By Joe Carlson |
2261 bp assembled on 2011-01-07
GenBank Submission: BT125880.1
> RE66324.complete AGTGGATTCTCGGTGGCTGTGTTTTCCTGGTCGTAGTTCGCCAAGTTAGT GGTCAATACGATTCGTTGGTTGCTCTCGCATTTCGAAATAGTGGTAATCG CACCAAATGGCAGTGCTATCAGTTCGAGGTTGTCGTATAGATTCCCATGG ACGCCCTAATGCTAACACATGTGCAAAGCTATATCTAAACCATGTCTGTG TGCGCCGCGTATGACTATGCCCAAGGAAATTCTTAATCATTTTTGGCTGA GTTTAGTGTGCATAGGGCGGTGCTCGCAGCGCCAGAGAATTTGCTGATCC AAAGTTTCAATCGAATTTGCTTTCCTTTAATCAATATAATGTCACTGACC AAGTCGTCGTCGAGAAAGGATCTAACCGAGCAGAATCAGTATCAGAATCA GAATGAGAATCAGAATCAGCCCAAATCGACGACCATAGTCAAGTATGAGA AGTCGTCGTGCCTCTTCTGCAACGAATGGTTCGATGCCCAGACATTCACG GAACACCTGATCCACTGCGGCCAGGTGCTGGAGGAGTGTCCCAACGGCTG TCAGGCCTTCATTCCACGCATCCGTATGCGATCCCATCTGAAGGAGTGTC CACGCAACCAGCACAATCTGAGCAATCAGCAACGCATGAGTGTCAGCATG GATCGCCTGGATAGGCAGTCGGATCAGCGTCTCCTGGTCATTGAACAGGA CGTGGGCACCATTCGGTCCGTTCTCAACGAGGAGATACGACAGCGTTTGC ATCTCATTACCGATGTGGGCAACATACGGAAGCAGAACCAGGTCGTCGAG GACTGGACCCGCGAAACCGAGAAGGCAATGGACGATCTGCGTCGCCAGAT GGAGGAGGAAACCAATCGGAAGGCATTCGCCATCGAACAGAACCAGCTGG ATGTCCAGTACTGCTGTGATATCACACAGTCCTTGAAAGAGCAAGTGGAG TCCAGGCTGGATGAGGCCCAAAAGCTGGTCAATCAGCTCTCGGCGGACGT GACCTATCACCAGAATCAGCTAAACGACAATATCCTAAAGCTGGAGGAGC TGATCTTTGAGAACGAGCGGCTCAACAGGGAGAAGTTCTTTCAGATCGAG GAGTTTCTGCAGCAGATCAATGAGGACATCAAAACAAAGCTGGGCAACAG TGACTATGTGACGTCAAAGCAGGCCACATTGGACTATGAGGTGAAGAATG TGAAGAACATTGTGTGCGAAACGGAGGAACGTTGCGATAAATTGGATCGA GCACTTCACCAGACCATGCAGAATATATCGGATTTGGAGACCCAAATGGC CATGCAGCAGCGGATTGCCAGTGTCCAGAATATAAGGGGACACTTGATTT GGCGCATCAAGGATTACTCGAAAAAACTGGAAGAGTCCAAGCAGTACGAC ACCATCCTCCATAGCGCCATGTTCTCCAATAAAGCCTTTGGCTATGCTCT ACGGCTGGATATATACTTGAATGGCAAGGGCACCTGGAAGGGCAGGAACA TGATCGCCTGCTTGAACGTTCTATCCGGAGAGTACGATCCCCTTCTGGCC TGGCCATGCCGCCTTCAGGCCGAGATCATCATCCGGGATCAGTGCACGAA TGTGGCAGATGCCGAGGATTATGTGAAGACCATCTTTGTGCGCAAGAAGA GCGATGATTTTATCCAAAGCAACCAGTACTTCCATATACCACACAAGGTA ATCACCAGTCGCAACTATCTTCGCAACGATTCCATGTTCATCGAGGTTCG AGTTCTAAAATAAAACCCATGCAGCATCGCTATCCCACCCACCAGGAGCG ATAAGAAAAAAAAAATCCAATTGCGGATTGTCACATACATAAAACATAAT TTATTCCATTGAGAGCGAACTGGAAGTTAAAAACCCGCTTACAAACACGA GTATGTGTACATATATAGTGTATAAGTGCATACGAATCGATTCATCGTTT CAATATGCGTATATTGTAGTTTTAAATGTCATTGCAGTTTTAAATGCTTT TTTTCAAATTAGGCAATAGTCACATTGAGGCACTGTCGAGACGAAGTCGG TAGTTAGAAAGCATAGCTTTTATTGCAACATTTCCCTGGTCACTTTGTCA AGATATAAGCAACTCTTTCATTTTTTGGTTTTTCATTTCGAGCAAATTAA CAAGCGATTTTTGAGAGGAACTTCCATATTATTTGTCTTTACGAACGCAT TTAAATACAAAGGTCTTTTAATAAAATACAACTTCAACACTTGCCAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16306521..16307311 | 1454..2243 | 3830 | 99.2 | Plus |
chrX | 22417052 | chrX | 16304813..16305313 | 1..501 | 2505 | 100 | Plus |
chrX | 22417052 | chrX | 16305383..16305812 | 500..929 | 2135 | 99.8 | Plus |
chrX | 22417052 | chrX | 16305880..16306291 | 928..1339 | 1985 | 98.8 | Plus |
chrX | 22417052 | chrX | 16306345..16306461 | 1338..1454 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16416794..16417587 | 1454..2247 | 3955 | 99.9 | Plus |
X | 23542271 | X | 16415086..16415586 | 1..501 | 2505 | 100 | Plus |
X | 23542271 | X | 16415656..16416085 | 500..929 | 2150 | 100 | Plus |
X | 23542271 | X | 16416153..16416564 | 928..1339 | 2060 | 100 | Plus |
X | 23542271 | X | 16416618..16416734 | 1338..1454 | 585 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16424892..16425685 | 1454..2247 | 3955 | 99.8 | Plus |
X | 23527363 | X | 16423184..16423684 | 1..501 | 2505 | 100 | Plus |
X | 23527363 | X | 16423754..16424183 | 500..929 | 2150 | 100 | Plus |
X | 23527363 | X | 16424251..16424662 | 928..1339 | 2060 | 100 | Plus |
X | 23527363 | X | 16424716..16424832 | 1338..1454 | 585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16304813..16305312 | 1..500 | 92 | -> | Plus |
chrX | 16305384..16305812 | 501..929 | 99 | -> | Plus |
chrX | 16305882..16306290 | 930..1338 | 98 | -> | Plus |
chrX | 16306346..16306461 | 1339..1454 | 100 | -> | Plus |
chrX | 16306522..16307313 | 1455..2245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf-like-RA | 1..1425 | 339..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf-like-RA | 1..1425 | 339..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf-like-RA | 1..1425 | 339..1763 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf-like-RA | 1..2245 | 1..2245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf-like-RA | 41..2285 | 1..2245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Traf-like-RA | 41..2285 | 1..2245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16415086..16415585 | 1..500 | 100 | -> | Plus |
X | 16415657..16416085 | 501..929 | 100 | -> | Plus |
X | 16416155..16416563 | 930..1338 | 100 | -> | Plus |
X | 16416619..16416734 | 1339..1454 | 100 | -> | Plus |
X | 16416795..16417585 | 1455..2245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16415086..16415585 | 1..500 | 100 | -> | Plus |
X | 16415657..16416085 | 501..929 | 100 | -> | Plus |
X | 16416155..16416563 | 930..1338 | 100 | -> | Plus |
X | 16416619..16416734 | 1339..1454 | 100 | -> | Plus |
X | 16416795..16417585 | 1455..2245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16415086..16415585 | 1..500 | 100 | -> | Plus |
X | 16415657..16416085 | 501..929 | 100 | -> | Plus |
X | 16416155..16416563 | 930..1338 | 100 | -> | Plus |
X | 16416619..16416734 | 1339..1454 | 100 | -> | Plus |
X | 16416795..16417585 | 1455..2245 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16310652..16310767 | 1339..1454 | 100 | -> | Plus |
arm_X | 16309119..16309618 | 1..500 | 100 | -> | Plus |
arm_X | 16310828..16311618 | 1455..2245 | 99 | Plus | |
arm_X | 16309690..16310118 | 501..929 | 100 | -> | Plus |
arm_X | 16310188..16310596 | 930..1338 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16423184..16423683 | 1..500 | 100 | -> | Plus |
X | 16423755..16424183 | 501..929 | 100 | -> | Plus |
X | 16424253..16424661 | 930..1338 | 100 | -> | Plus |
X | 16424717..16424832 | 1339..1454 | 100 | -> | Plus |
X | 16424893..16425683 | 1455..2245 | 99 | Plus |
Translation from 338 to 1762
> RE66324.pep MSLTKSSSRKDLTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDA QTFTEHLIHCGQVLEECPNGCQAFIPRIRMRSHLKECPRNQHNLSNQQRM SVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLHLITDVGNIRKQN QVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLK EQVESRLDEAQKLVNQLSADVTYHQNQLNDNILKLEELIFENERLNREKF FQIEEFLQQINEDIKTKLGNSDYVTSKQATLDYEVKNVKNIVCETEERCD KLDRALHQTMQNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSKKLEES KQYDTILHSAMFSNKAFGYALRLDIYLNGKGTWKGRNMIACLNVLSGEYD PLLAWPCRLQAEIIIRDQCTNVADAEDYVKTIFVRKKSDDFIQSNQYFHI PHKVITSRNYLRNDSMFIEVRVLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19567-PA | 465 | GF19567-PA | 1..465 | 1..474 | 2020 | 79.5 | Plus |
Dana\GF21137-PA | 488 | GF21137-PA | 330..480 | 331..472 | 186 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17964-PA | 474 | GG17964-PA | 1..474 | 1..474 | 2335 | 93.1 | Plus |
Dere\GG24997-PA | 486 | GG24997-PA | 328..478 | 331..472 | 186 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12698-PA | 462 | GH12698-PA | 10..462 | 26..474 | 1955 | 78.3 | Plus |
Dgri\GH13208-PA | 490 | GH13208-PA | 332..482 | 331..472 | 185 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Traf-like-PA | 474 | CG4394-PA | 1..474 | 1..474 | 2470 | 100 | Plus |
Traf-like-PC | 452 | CG4394-PC | 33..452 | 55..474 | 2182 | 100 | Plus |
Traf-like-PE | 395 | CG4394-PE | 1..395 | 80..474 | 2038 | 100 | Plus |
Traf-like-PD | 395 | CG4394-PD | 1..395 | 80..474 | 2038 | 100 | Plus |
Traf-like-PG | 395 | CG4394-PG | 1..395 | 80..474 | 2038 | 100 | Plus |
Traf-like-PF | 395 | CG4394-PF | 1..395 | 80..474 | 2038 | 100 | Plus |
Traf-like-PB | 395 | CG4394-PB | 1..395 | 80..474 | 2038 | 100 | Plus |
Traf4-PE | 477 | CG3048-PE | 319..469 | 331..472 | 164 | 29.8 | Plus |
Traf4-PA | 486 | CG3048-PA | 328..478 | 331..472 | 164 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14463-PA | 467 | GI14463-PA | 14..467 | 27..474 | 1954 | 78.2 | Plus |
Dmoj\GI22040-PA | 489 | GI22040-PA | 331..481 | 331..472 | 184 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15839-PA | 345 | GL15839-PA | 1..342 | 1..336 | 1421 | 81.1 | Plus |
Dper\GL22390-PA | 147 | GL22390-PA | 2..105 | 334..437 | 512 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18154-PA | 480 | GA18154-PA | 1..480 | 1..474 | 2149 | 83.6 | Plus |
Dpse\GA15869-PA | 493 | GA15869-PA | 335..485 | 331..472 | 180 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13439-PA | 460 | GM13439-PA | 1..460 | 1..474 | 2395 | 95.6 | Plus |
Dsec\GM18466-PA | 520 | GM18466-PA | 362..512 | 331..472 | 187 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23279-PA | 483 | GD23279-PA | 325..475 | 331..472 | 186 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18797-PA | 467 | GJ18797-PA | 1..467 | 1..474 | 1965 | 75.5 | Plus |
Dvir\GJ16121-PA | 493 | GJ16121-PA | 335..485 | 331..472 | 186 | 30.1 | Plus |
Translation from 338 to 1762
> RE66324.hyp MSLTKSSSRKDLTEQNQYQNQNENQNQPKSTTIVKYEKSSCLFCNEWFDA QTFTEHLIHCGQVLEECPNGCQAFIPRIRMRSHLKECPRNQHNLSNQQRM SVSMDRLDRQSDQRLLVIEQDVGTIRSVLNEEIRQRLHLITDVGNIRKQN QVVEDWTRETEKAMDDLRRQMEEETNRKAFAIEQNQLDVQYCCDITQSLK EQVESRLDEAQKLVNQLSADVTYHQNQLNDNILKLEELIFENERLNREKF FQIEEFLQQINEDIKTKLGNSDYVTSKQATLDYEVKNVKNIVCETEERCD KLDRALHQTMQNISDLETQMAMQQRIASVQNIRGHLIWRIKDYSKKLEES KQYDTILHSAMFSNKAFGYALRLDIYLNGKGTWKGRNMIACLNVLSGEYD PLLAWPCRLQAEIIIRDQCTNVADAEDYVKTIFVRKKSDDFIQSNQYFHI PHKVITSRNYLRNDSMFIEVRVLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Traf-like-PA | 474 | CG4394-PA | 1..474 | 1..474 | 2470 | 100 | Plus |
Traf-like-PC | 452 | CG4394-PC | 33..452 | 55..474 | 2182 | 100 | Plus |
Traf-like-PE | 395 | CG4394-PE | 1..395 | 80..474 | 2038 | 100 | Plus |
Traf-like-PD | 395 | CG4394-PD | 1..395 | 80..474 | 2038 | 100 | Plus |
Traf-like-PG | 395 | CG4394-PG | 1..395 | 80..474 | 2038 | 100 | Plus |