Clone RE66446 Report

Search the DGRC for RE66446

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:664
Well:46
Vector:pFlc-1
Associated Gene/TranscriptCG7427-RA
Protein status:RE66446.pep: gold
Preliminary Size:954
Sequenced Size:1603

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7427 2002-01-01 Sim4 clustering to Release 2
CG7427 2002-05-20 Blastp of sequenced clone
CG7427 2003-01-01 Sim4 clustering to Release 3
CG7427 2008-04-29 Release 5.5 accounting
CG7427 2008-08-15 Release 5.9 accounting
CG7427 2008-12-18 5.12 accounting

Clone Sequence Records

RE66446.complete Sequence

1603 bp (1603 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118412

> RE66446.complete
GTCAAGTGAAGGTCACTCATCAGTGAACAAAACTAAATAAAAATATCCCT
TTGGAAAATATGGCTAAATATGTATAATATGTGTAAGCAATCAACACAGG
TTTACCAAACCAAGAAAAATTTCTTCGCGAATTAAACCTAACGGAACTGT
GCGATACGTGTTTGGTTTAGTTTCTCCAGGCAAACAAACGTCGTTTTCCA
ACACCTGCAGTCCGCAGTTTCTTGTTGTTAATAGTCGGAAACCACAGCTC
TAGACAAGTGCGAAAATCGAACCAGTGGCAGGCAGTGCAATGAACAAACT
GAAATCCAGCACGCACCGCGATAAGGTGAAGAAGTTCATATCGCTGACAC
ACACGGGGGAACAGACGGCAATATTCTGTTTGCAACAGAACGACTGGAAA
TTCGAGTTGGCCAGCGACAATTACTTCCAGAATCCGGAGTACTATTACCG
GGAGTTGGATCGCAAGCGCATCGAGCAGCTATTCATGCGCTATCGGGATC
CCAGTGATCCCCTAAAGATCGGATCCCAGGGCGTAATCCACTTCCTGGAG
GACTTGGACCTGAAGCCAGACTCAAAACTGGTGCTGATCATAGCGTGGAA
ATTCCACGCCGAGGTGCAGTGCGAGTTCTCGCGTGATGAGTTTATCAATG
GCATGTGCGACCTGGGCATCGATAGCATCGACAAGCTAAAGACCAAGCTG
CCCATCCTTGAGCAGGAGCTGAACGACGCCGGCAAGTTCAAGGACTTTTA
CCACTTTACCTTCAACTACGCCAAGGATCCGGGGCAAAAGGGCATTGACC
TGGAAATGGCAATCGCCTACTGGTGCATCGTTCTTAGTGGGCGCTTCAAG
TTCTTGGACATCTGGTGCCAGTTCCTCGAGGAGAAACACAAGCGGGCCAT
CTCGCGAGATACGTGGAACCTGCTGCTCGACTTTGCCACCAACATCGACG
ACCGGATGAGCAACTACGATTCGGAGGGCGCCTGGCCGGTTCTAATAGAC
GACTTTGTGGAGTGGTGCCAGGAGAACGATCATCTCAAGGAGGACTCCTC
GCCGGCATCCGGCTACCAGCAGCAGTCCAGTGCTAGCTCCAGCTCCCAAA
AGAACATATCCAGCGCCTACCAGACCTCGCACAGTACAAACATGAACTAT
GGCTAACGAATTGTTACACTGTATTGTATTCTCATTAATGATAGATTTGC
TTTTATTCTGATTATTCTAAATAACGGAGAATCTAAGCACGGCCGGTAAA
TTTACATTTTCTCTATAAAAGCGTCATAATAAATAAATAAAGTTAGTAAA
TGTAAGTCCCCGGCGTCCTATTCATTGAAATTGATAGTGGTAGACAACAT
CTAGTTCATCCGTTAGAAATAAATAGAAATTGTGGAATATAAGCGTAACA
TTTTCAAGCTTAAATTTAGAAATCTAAATGAATTTTTATTTCGTTGCTTA
TGACTAGACATAAATCACATCCCTCTGGTATTATTTTAGTACCTAATATT
TTGTAATTTTTACGTTCTTCTATCATTGATAAATACAAATTGAAATAATT
TTCCCTTTTGAAATAAAACTCGAATGCTATTATTTTGATGAAAAAAAAAA
AAA

RE66446.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RA 1683 CG7427-RA 21..1613 1..1593 7965 100 Plus
CG7427.a 1526 CG7427.a 104..1526 171..1593 7115 100 Plus
CG7427.c 1370 CG7427.c 69..1370 292..1593 6510 100 Plus
CG7427.a 1526 CG7427.a 22..103 1..82 410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15554185..15555477 292..1590 6340 99.4 Plus
chr3L 24539361 chr3L 15553362..15553653 1..292 1460 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15564261..15565562 292..1593 6510 100 Plus
3L 28110227 3L 15563438..15563729 1..292 1460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15557361..15558662 292..1593 6510 100 Plus
3L 28103327 3L 15556538..15556829 1..292 1460 100 Plus
Blast to na_te.dros performed 2019-03-16 06:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 1574..1925 1252..1582 161 54.5 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9456..9807 1252..1582 161 54.5 Plus
invader6 4885 invader6 INVADER6 4885bp 1557..1699 1535..1396 122 56.9 Minus

RE66446.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:11:41 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15553362..15553653 1..292 100 -> Plus
chr3L 15554186..15555477 293..1590 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:01 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..867 290..1156 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:50 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..867 290..1156 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:47 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..867 290..1156 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:33 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..867 290..1156 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:13:07 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..867 290..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:50 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..1590 1..1590 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:49 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..1590 1..1590 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:47 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 12..1601 1..1590 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:33 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..1590 1..1590 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:13:07 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 12..1601 1..1590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:41 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15563438..15563729 1..292 100 -> Plus
3L 15564262..15565559 293..1590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:41 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15563438..15563729 1..292 100 -> Plus
3L 15564262..15565559 293..1590 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:41 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15563438..15563729 1..292 100 -> Plus
3L 15564262..15565559 293..1590 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:47 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15556538..15556829 1..292 100 -> Plus
arm_3L 15557362..15558659 293..1590 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:09 Download gff for RE66446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15556538..15556829 1..292 100 -> Plus
3L 15557362..15558659 293..1590 100   Plus

RE66446.pep Sequence

Translation from 289 to 1155

> RE66446.pep
MNKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPE
YYYRELDRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLI
IAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKF
KDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFLDIWCQFLEEKH
KRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLK
EDSSPASGYQQQSSASSSSQKNISSAYQTSHSTNMNYG*

RE66446.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24079-PA 289 GF24079-PA 1..289 1..288 1336 91 Plus
Dana\GF10048-PA 246 GF10048-PA 47..245 58..257 342 35.5 Plus
Dana\GF11995-PA 332 GF11995-PA 109..297 55..242 310 35.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15909-PA 288 GG15909-PA 1..288 1..288 1536 99 Plus
Dere\GG16098-PA 248 GG16098-PA 49..233 58..242 337 35.7 Plus
Dere\GG22539-PA 334 GG22539-PA 111..299 55..242 314 36.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14742-PA 282 GH14742-PA 1..282 1..288 1337 88.9 Plus
Dgri\GH14379-PA 246 GH14379-PA 45..246 56..257 338 34.7 Plus
Dgri\GH21603-PA 338 GH21603-PA 115..303 55..242 322 37 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
SCCRO-PE 288 CG7427-PE 1..288 1..288 1549 100 Plus
SCCRO-PA 288 CG7427-PA 1..288 1..288 1549 100 Plus
SCCRO-PC 297 CG7427-PC 10..297 1..288 1545 99.7 Plus
SCCRO-PD 291 CG7427-PD 5..291 2..288 1544 100 Plus
SCCRO-PB 291 CG7427-PB 5..291 2..288 1544 100 Plus
SCCRO4-PD 213 CG6597-PD 14..198 58..242 344 35.7 Plus
SCCRO4-PE 248 CG6597-PE 49..233 58..242 344 35.7 Plus
SCCRO4-PB 248 CG6597-PB 49..233 58..242 344 35.7 Plus
SCCRO4-PA 248 CG6597-PA 49..233 58..242 344 35.7 Plus
SCCRO3-PB 334 CG13322-PB 111..299 55..242 324 37.5 Plus
SCCRO3-PC 334 CG13322-PC 111..299 55..242 324 37.5 Plus
SCCRO3-PA 334 CG13322-PA 111..299 55..242 324 37.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13120-PA 281 GI13120-PA 1..281 1..288 1354 87.5 Plus
Dmoj\GI11322-PA 246 GI11322-PA 47..246 58..257 336 35 Plus
Dmoj\GI19574-PA 336 GI19574-PA 112..300 55..242 311 36.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24888-PA 282 GL24888-PA 1..282 1..288 1391 90.6 Plus
Dper\GL25128-PA 244 GL25128-PA 47..230 59..242 338 35.9 Plus
Dper\GL17317-PA 336 GL17317-PA 113..301 55..242 312 36.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20342-PA 282 GA20342-PA 1..282 1..288 1391 90.6 Plus
Dpse\GA23691-PA 244 GA23691-PA 47..230 59..242 338 35.9 Plus
Dpse\GA12204-PA 336 GA12204-PA 113..301 55..242 312 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25539-PA 239 GM25539-PA 2..239 51..288 1276 99.6 Plus
Dsec\GM22269-PA 248 GM22269-PA 47..233 56..242 339 35.3 Plus
Dsec\GM20324-PA 334 GM20324-PA 111..299 55..242 315 36.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14554-PA 288 GD14554-PA 1..288 1..288 1544 99.7 Plus
Dsim\GD14870-PA 248 GD14870-PA 47..233 56..242 339 35.3 Plus
Dsim\GD25802-PA 334 GD25802-PA 111..299 55..242 315 36.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13867-PA 281 GJ13867-PA 1..281 1..288 1360 87.8 Plus
Dvir\GJ11578-PA 246 GJ11578-PA 47..246 58..257 335 35 Plus
Dvir\GJ21150-PA 340 GJ21150-PA 117..305 55..242 310 36.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10601-PA 272 GK10601-PA 1..272 1..288 1302 85.1 Plus
Dwil\GK16948-PA 246 GK16948-PA 47..231 58..242 333 35.1 Plus
Dwil\GK20876-PA 373 GK20876-PA 121..309 55..242 296 35.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22250-PA 288 GE22250-PA 1..288 1..288 1521 98.3 Plus
Dyak\GE23063-PA 248 GE23063-PA 49..233 58..242 337 35.7 Plus
Dyak\GE13410-PA 334 GE13410-PA 111..299 55..242 309 36.5 Plus

RE66446.hyp Sequence

Translation from 289 to 1155

> RE66446.hyp
MNKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPE
YYYRELDRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLI
IAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKF
KDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFLDIWCQFLEEKH
KRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLK
EDSSPASGYQQQSSASSSSQKNISSAYQTSHSTNMNYG*

RE66446.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-PE 288 CG7427-PE 1..288 1..288 1549 100 Plus
CG7427-PA 288 CG7427-PA 1..288 1..288 1549 100 Plus
CG7427-PC 297 CG7427-PC 10..297 1..288 1545 99.7 Plus
CG7427-PD 291 CG7427-PD 5..291 2..288 1544 100 Plus
CG7427-PB 291 CG7427-PB 5..291 2..288 1544 100 Plus