BDGP Sequence Production Resources |
Search the DGRC for RE66446
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 664 |
Well: | 46 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG7427-RA |
Protein status: | RE66446.pep: gold |
Preliminary Size: | 954 |
Sequenced Size: | 1603 |
Gene | Date | Evidence |
---|---|---|
CG7427 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7427 | 2002-05-20 | Blastp of sequenced clone |
CG7427 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7427 | 2008-04-29 | Release 5.5 accounting |
CG7427 | 2008-08-15 | Release 5.9 accounting |
CG7427 | 2008-12-18 | 5.12 accounting |
1603 bp (1603 high quality bases) assembled on 2002-05-20
GenBank Submission: AY118412
> RE66446.complete GTCAAGTGAAGGTCACTCATCAGTGAACAAAACTAAATAAAAATATCCCT TTGGAAAATATGGCTAAATATGTATAATATGTGTAAGCAATCAACACAGG TTTACCAAACCAAGAAAAATTTCTTCGCGAATTAAACCTAACGGAACTGT GCGATACGTGTTTGGTTTAGTTTCTCCAGGCAAACAAACGTCGTTTTCCA ACACCTGCAGTCCGCAGTTTCTTGTTGTTAATAGTCGGAAACCACAGCTC TAGACAAGTGCGAAAATCGAACCAGTGGCAGGCAGTGCAATGAACAAACT GAAATCCAGCACGCACCGCGATAAGGTGAAGAAGTTCATATCGCTGACAC ACACGGGGGAACAGACGGCAATATTCTGTTTGCAACAGAACGACTGGAAA TTCGAGTTGGCCAGCGACAATTACTTCCAGAATCCGGAGTACTATTACCG GGAGTTGGATCGCAAGCGCATCGAGCAGCTATTCATGCGCTATCGGGATC CCAGTGATCCCCTAAAGATCGGATCCCAGGGCGTAATCCACTTCCTGGAG GACTTGGACCTGAAGCCAGACTCAAAACTGGTGCTGATCATAGCGTGGAA ATTCCACGCCGAGGTGCAGTGCGAGTTCTCGCGTGATGAGTTTATCAATG GCATGTGCGACCTGGGCATCGATAGCATCGACAAGCTAAAGACCAAGCTG CCCATCCTTGAGCAGGAGCTGAACGACGCCGGCAAGTTCAAGGACTTTTA CCACTTTACCTTCAACTACGCCAAGGATCCGGGGCAAAAGGGCATTGACC TGGAAATGGCAATCGCCTACTGGTGCATCGTTCTTAGTGGGCGCTTCAAG TTCTTGGACATCTGGTGCCAGTTCCTCGAGGAGAAACACAAGCGGGCCAT CTCGCGAGATACGTGGAACCTGCTGCTCGACTTTGCCACCAACATCGACG ACCGGATGAGCAACTACGATTCGGAGGGCGCCTGGCCGGTTCTAATAGAC GACTTTGTGGAGTGGTGCCAGGAGAACGATCATCTCAAGGAGGACTCCTC GCCGGCATCCGGCTACCAGCAGCAGTCCAGTGCTAGCTCCAGCTCCCAAA AGAACATATCCAGCGCCTACCAGACCTCGCACAGTACAAACATGAACTAT GGCTAACGAATTGTTACACTGTATTGTATTCTCATTAATGATAGATTTGC TTTTATTCTGATTATTCTAAATAACGGAGAATCTAAGCACGGCCGGTAAA TTTACATTTTCTCTATAAAAGCGTCATAATAAATAAATAAAGTTAGTAAA TGTAAGTCCCCGGCGTCCTATTCATTGAAATTGATAGTGGTAGACAACAT CTAGTTCATCCGTTAGAAATAAATAGAAATTGTGGAATATAAGCGTAACA TTTTCAAGCTTAAATTTAGAAATCTAAATGAATTTTTATTTCGTTGCTTA TGACTAGACATAAATCACATCCCTCTGGTATTATTTTAGTACCTAATATT TTGTAATTTTTACGTTCTTCTATCATTGATAAATACAAATTGAAATAATT TTCCCTTTTGAAATAAAACTCGAATGCTATTATTTTGATGAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7427-RA | 1683 | CG7427-RA | 21..1613 | 1..1593 | 7965 | 100 | Plus |
CG7427.a | 1526 | CG7427.a | 104..1526 | 171..1593 | 7115 | 100 | Plus |
CG7427.c | 1370 | CG7427.c | 69..1370 | 292..1593 | 6510 | 100 | Plus |
CG7427.a | 1526 | CG7427.a | 22..103 | 1..82 | 410 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 1574..1925 | 1252..1582 | 161 | 54.5 | Plus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 9456..9807 | 1252..1582 | 161 | 54.5 | Plus |
invader6 | 4885 | invader6 INVADER6 4885bp | 1557..1699 | 1535..1396 | 122 | 56.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 15553362..15553653 | 1..292 | 100 | -> | Plus |
chr3L | 15554186..15555477 | 293..1590 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..867 | 290..1156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..867 | 290..1156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..867 | 290..1156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..867 | 290..1156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..867 | 290..1156 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..1590 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..1590 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 12..1601 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 1..1590 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7427-RA | 12..1601 | 1..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15563438..15563729 | 1..292 | 100 | -> | Plus |
3L | 15564262..15565559 | 293..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15563438..15563729 | 1..292 | 100 | -> | Plus |
3L | 15564262..15565559 | 293..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15563438..15563729 | 1..292 | 100 | -> | Plus |
3L | 15564262..15565559 | 293..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 15556538..15556829 | 1..292 | 100 | -> | Plus |
arm_3L | 15557362..15558659 | 293..1590 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 15556538..15556829 | 1..292 | 100 | -> | Plus |
3L | 15557362..15558659 | 293..1590 | 100 | Plus |
Translation from 289 to 1155
> RE66446.pep MNKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPE YYYRELDRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLI IAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKF KDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFLDIWCQFLEEKH KRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLK EDSSPASGYQQQSSASSSSQKNISSAYQTSHSTNMNYG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24079-PA | 289 | GF24079-PA | 1..289 | 1..288 | 1336 | 91 | Plus |
Dana\GF10048-PA | 246 | GF10048-PA | 47..245 | 58..257 | 342 | 35.5 | Plus |
Dana\GF11995-PA | 332 | GF11995-PA | 109..297 | 55..242 | 310 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15909-PA | 288 | GG15909-PA | 1..288 | 1..288 | 1536 | 99 | Plus |
Dere\GG16098-PA | 248 | GG16098-PA | 49..233 | 58..242 | 337 | 35.7 | Plus |
Dere\GG22539-PA | 334 | GG22539-PA | 111..299 | 55..242 | 314 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14742-PA | 282 | GH14742-PA | 1..282 | 1..288 | 1337 | 88.9 | Plus |
Dgri\GH14379-PA | 246 | GH14379-PA | 45..246 | 56..257 | 338 | 34.7 | Plus |
Dgri\GH21603-PA | 338 | GH21603-PA | 115..303 | 55..242 | 322 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SCCRO-PE | 288 | CG7427-PE | 1..288 | 1..288 | 1549 | 100 | Plus |
SCCRO-PA | 288 | CG7427-PA | 1..288 | 1..288 | 1549 | 100 | Plus |
SCCRO-PC | 297 | CG7427-PC | 10..297 | 1..288 | 1545 | 99.7 | Plus |
SCCRO-PD | 291 | CG7427-PD | 5..291 | 2..288 | 1544 | 100 | Plus |
SCCRO-PB | 291 | CG7427-PB | 5..291 | 2..288 | 1544 | 100 | Plus |
SCCRO4-PD | 213 | CG6597-PD | 14..198 | 58..242 | 344 | 35.7 | Plus |
SCCRO4-PE | 248 | CG6597-PE | 49..233 | 58..242 | 344 | 35.7 | Plus |
SCCRO4-PB | 248 | CG6597-PB | 49..233 | 58..242 | 344 | 35.7 | Plus |
SCCRO4-PA | 248 | CG6597-PA | 49..233 | 58..242 | 344 | 35.7 | Plus |
SCCRO3-PB | 334 | CG13322-PB | 111..299 | 55..242 | 324 | 37.5 | Plus |
SCCRO3-PC | 334 | CG13322-PC | 111..299 | 55..242 | 324 | 37.5 | Plus |
SCCRO3-PA | 334 | CG13322-PA | 111..299 | 55..242 | 324 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13120-PA | 281 | GI13120-PA | 1..281 | 1..288 | 1354 | 87.5 | Plus |
Dmoj\GI11322-PA | 246 | GI11322-PA | 47..246 | 58..257 | 336 | 35 | Plus |
Dmoj\GI19574-PA | 336 | GI19574-PA | 112..300 | 55..242 | 311 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24888-PA | 282 | GL24888-PA | 1..282 | 1..288 | 1391 | 90.6 | Plus |
Dper\GL25128-PA | 244 | GL25128-PA | 47..230 | 59..242 | 338 | 35.9 | Plus |
Dper\GL17317-PA | 336 | GL17317-PA | 113..301 | 55..242 | 312 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20342-PA | 282 | GA20342-PA | 1..282 | 1..288 | 1391 | 90.6 | Plus |
Dpse\GA23691-PA | 244 | GA23691-PA | 47..230 | 59..242 | 338 | 35.9 | Plus |
Dpse\GA12204-PA | 336 | GA12204-PA | 113..301 | 55..242 | 312 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25539-PA | 239 | GM25539-PA | 2..239 | 51..288 | 1276 | 99.6 | Plus |
Dsec\GM22269-PA | 248 | GM22269-PA | 47..233 | 56..242 | 339 | 35.3 | Plus |
Dsec\GM20324-PA | 334 | GM20324-PA | 111..299 | 55..242 | 315 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14554-PA | 288 | GD14554-PA | 1..288 | 1..288 | 1544 | 99.7 | Plus |
Dsim\GD14870-PA | 248 | GD14870-PA | 47..233 | 56..242 | 339 | 35.3 | Plus |
Dsim\GD25802-PA | 334 | GD25802-PA | 111..299 | 55..242 | 315 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13867-PA | 281 | GJ13867-PA | 1..281 | 1..288 | 1360 | 87.8 | Plus |
Dvir\GJ11578-PA | 246 | GJ11578-PA | 47..246 | 58..257 | 335 | 35 | Plus |
Dvir\GJ21150-PA | 340 | GJ21150-PA | 117..305 | 55..242 | 310 | 36.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10601-PA | 272 | GK10601-PA | 1..272 | 1..288 | 1302 | 85.1 | Plus |
Dwil\GK16948-PA | 246 | GK16948-PA | 47..231 | 58..242 | 333 | 35.1 | Plus |
Dwil\GK20876-PA | 373 | GK20876-PA | 121..309 | 55..242 | 296 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22250-PA | 288 | GE22250-PA | 1..288 | 1..288 | 1521 | 98.3 | Plus |
Dyak\GE23063-PA | 248 | GE23063-PA | 49..233 | 58..242 | 337 | 35.7 | Plus |
Dyak\GE13410-PA | 334 | GE13410-PA | 111..299 | 55..242 | 309 | 36.5 | Plus |
Translation from 289 to 1155
> RE66446.hyp MNKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPE YYYRELDRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLI IAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKF KDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFLDIWCQFLEEKH KRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLK EDSSPASGYQQQSSASSSSQKNISSAYQTSHSTNMNYG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7427-PE | 288 | CG7427-PE | 1..288 | 1..288 | 1549 | 100 | Plus |
CG7427-PA | 288 | CG7427-PA | 1..288 | 1..288 | 1549 | 100 | Plus |
CG7427-PC | 297 | CG7427-PC | 10..297 | 1..288 | 1545 | 99.7 | Plus |
CG7427-PD | 291 | CG7427-PD | 5..291 | 2..288 | 1544 | 100 | Plus |
CG7427-PB | 291 | CG7427-PB | 5..291 | 2..288 | 1544 | 100 | Plus |