Clone RE66485 Report

Search the DGRC for RE66485

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:664
Well:85
Vector:pFlc-1
Associated Gene/TranscriptCG11760-RB
Protein status:RE66485.pep: gold
Sequenced Size:1924

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11760-RB 2008-08-11 Manual selection by Sue Celniker
CG11760 2008-12-18 5.12 accounting

Clone Sequence Records

RE66485.complete Sequence

1924 bp assembled on 2008-11-19

GenBank Submission: BT053750.1

> RE66485.complete
AGTGTATAAATACAGTGCCCAACGTGAGCAACGCCGCCGTGTGAGCGATC
CGGGAGATCAAATCGGTCCAATTTGCCGTAGACATCGAGGGGTAACAGGA
GAAGCAGCAGAAGGAGGTGCTAAGCCGGCAGAAAGATGCCGCCCAAGCGT
CCGCCACCGCTCGTGCCGAAGAAGCCAAATCCCAGCATGAACTACGAGGT
GTTGATCTACCTCAACTCGTTCTACTTTGGCATGTTCGCCTGTTGCGAGA
TGGCCATGGGCCTCCTGAAGGCCATCAATCTCAGCTACACGGGACATACT
CTAGCCCTGGACACGGGGGTGATGATTAGCTTCATTGTCTTTGAGACGAT
CCGATTGATAATGGGGCGCATGAGTTCGCTGGCCGATCGAGGCTGGTCGG
CCATACTGTCGGTCTTCATGACCGCCCCCTGCTTTGTGGGCGTCTCCTAT
CTACTGCTGCTCCAGACCTACCGACTGCGCCTGGAGTACTGCCTGTGCAC
GCTGCAGATCGCCCTTTACCTGACCGAGGTGTGGTATGCCATCGTCTTCG
TTTTCTCGCTGTGTCGTCCAGTAACTTATGATTAGCCATATAGACAGAAA
CATCCAACAGCCAACTAGCAGCAAATATACATGCGAAAGTTTAGCAATCT
ATAAGATCGAAAAAGGATAATATGCGGTGTAAGGAAATTTAATGAATTTG
AAAAGCAGTAGGCAGCTGAATTGCTCATGGCCGTGGAGAAGAGAAACCAA
ACAGAAAGAAAAAAAAAACAAAACAAAACACATATGTAGCATATTAATAA
TTATGTATAGTAAGGTTTATGATAACATACACACACTCTTATATACATAT
ATTTAACGGTTTTATATACAAAAATTGTTAACATTTAAGCATCAATTGGA
ACCAATATAAGACAACAAGCAAAACCTAAAACTTGAATAATTTTCACAAT
TTTAAGATGAAAATTTTTTTGTAAAAAGAAAAATATCGAAAAACAGCCGA
AAAACAAATTTGACGTGTGGAAATAATAATTTATAATAGTTCACAGATAG
CTCGAATCTTAAAAAGAATTGTAAAAAAATCAGTGGAATGTCTCACAAAA
TCTAGTCAGCATCAAAATCATGAAAAACAAATGGCCGAAAGGCCATTAAA
AAAATTCATTACCACTAAGAGTCAGCGTTTAGTAGTTCATACCAATATTC
AAAAGGCGGAGAACAACATAATTAAGCCCAGTTAAAAGTCTAGACCATGT
GTGTACTTTAATGAAACTACTTTATATAAACCTAGCAAATAGCGTAAATA
ACATTTTCAAGACGTCACTAAAAACAATGCAAACCCGAGCGGGCAACCGT
TTACTAGAAAGCGAACAACAAATTAGCTAAATCATATAAAACATTTATAG
AGTGTTAAAAACTAGGCGAAAACCCTCCATTACACTTCTCCCCAATTCAG
CCTATTGGCAACTCGAAACGCCCTTTAAATCACGCTCAATTATCCCCGCC
TGATAGGATCCGAGGATTGCAGCTCCTCCAATGCTAGTCACTAATGTTCA
CAAACATTTTCTAAGCTAGACCGAAGATTGTGTAATAATTTGATAAGACC
TTTGTGTGGTTTCATAGCAAAATAACGCACAAATCGATAACAAAAACTCT
CAACAGTCCACAAATCTCATGCTTTTAAAACAAAAGAAATAATTTTACTG
AAACCAAACAGCTGGAAGCTAGAAGCTGAAAGAAAACCAAAGCCACATCC
TACGTTGAATAATTTACCTGTATAATATTTATGTCATTTCGTTAAACGCA
AAATGTTAACATACTTTTAAAGCGCGTGTAAAACGGATAGTTAATAAAAT
AACGACAACAATATTTAAAAGAACATATACACTCGATGAAAATGAATATT
AAAGATCGAAAAAAAAAAAAAAAA

RE66485.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8116-RB 2829 CG8116-RB 1303..2828 390..1915 7615 99.9 Plus
CG11760-RB 733 CG11760-RB 1..733 1..733 3650 99.8 Plus
CG8116-RC 1835 CG8116-RC 1298..1835 390..927 2690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4545774..4547292 390..1908 7440 99.6 Plus
chr3R 27901430 chr3R 4545170..4545561 1..392 1930 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8719802..8721333 390..1921 7630 99.9 Plus
3R 32079331 3R 8719198..8719589 1..392 1945 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8460633..8462164 390..1921 7630 99.8 Plus
3R 31820162 3R 8460029..8460420 1..392 1945 99.7 Plus
Blast to na_te.dros performed on 2019-03-15 21:06:03 has no hits.

RE66485.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:07:02 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4545170..4545560 1..391 99 -> Plus
chr3R 4545776..4547292 392..1908 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:06 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 1..450 136..585 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:20:29 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 1..450 136..585 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:37:55 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 1..450 136..585 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:43:49 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 1..450 136..585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-19 14:51:33 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 1..1908 1..1908 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:20:28 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG8116-RB 1303..2821 390..1908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:37:55 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 1..1908 1..1908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:49 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
CG11760-RB 1..1908 1..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:07:02 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8719198..8719588 1..391 99 -> Plus
3R 8719804..8721320 392..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:07:02 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8719198..8719588 1..391 99 -> Plus
3R 8719804..8721320 392..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:07:02 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8719198..8719588 1..391 99 -> Plus
3R 8719804..8721320 392..1908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:37:55 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4544920..4545310 1..391 99 -> Plus
arm_3R 4545526..4547042 392..1908 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:51:57 Download gff for RE66485.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8460029..8460419 1..391 99 -> Plus
3R 8460635..8462151 392..1908 99   Plus

RE66485.hyp Sequence

Translation from 135 to 584

> RE66485.hyp
MPPKRPPPLVPKKPNPSMNYEVLIYLNSFYFGMFACCEMAMGLLKAINLS
YTGHTLALDTGVMISFIVFETIRLIMGRMSSLADRGWSAILSVFMTAPCF
VGVSYLLLLQTYRLRLEYCLCTLQIALYLTEVWYAIVFVFSLCRPVTYD*

RE66485.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11760-PB 149 CG11760-PB 1..149 1..149 786 100 Plus
CG8116-PC 136 CG8116-PC 2..135 15..148 346 48.5 Plus
CG8116-PB 136 CG8116-PB 2..135 15..148 346 48.5 Plus
CG8116-PA 136 CG8116-PA 2..135 15..148 346 48.5 Plus

RE66485.pep Sequence

Translation from 135 to 584

> RE66485.pep
MPPKRPPPLVPKKPNPSMNYEVLIYLNSFYFGMFACCEMAMGLLKAINLS
YTGHTLALDTGVMISFIVFETIRLIMGRMSSLADRGWSAILSVFMTAPCF
VGVSYLLLLQTYRLRLEYCLCTLQIALYLTEVWYAIVFVFSLCRPVTYD*

RE66485.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18183-PA 149 GF18183-PA 17..149 17..149 654 94 Plus
Dana\GF18182-PA 136 GF18182-PA 2..135 15..148 315 45.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12372-PA 149 GG12372-PA 1..149 1..149 772 98.7 Plus
Dere\GG12263-PA 136 GG12263-PA 2..135 15..148 333 48.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18573-PA 149 GH18573-PA 17..149 17..149 620 89.5 Plus
Dgri\GH18572-PA 136 GH18572-PA 2..135 15..148 333 49.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11760-PB 149 CG11760-PB 1..149 1..149 786 100 Plus
TMEM216-PC 136 CG8116-PC 2..135 15..148 346 48.5 Plus
TMEM216-PB 136 CG8116-PB 2..135 15..148 346 48.5 Plus
TMEM216-PA 136 CG8116-PA 2..135 15..148 346 48.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22391-PA 149 GI22391-PA 17..149 17..149 628 88.7 Plus
Dmoj\GI22390-PA 136 GI22390-PA 2..135 15..148 333 49.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12473-PA 149 GL12473-PA 12..149 12..149 681 92 Plus
Dper\GL12472-PA 136 GL12472-PA 2..135 15..148 335 49.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27519-PA 149 GA27519-PA 12..149 12..149 681 92 Plus
Dpse\GA20835-PA 136 GA20835-PA 2..135 15..148 335 49.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23755-PA 149 GM23755-PA 1..149 1..149 780 100 Plus
Dsec\GM23754-PA 136 GM23754-PA 2..135 15..148 336 49.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18566-PA 149 GD18566-PA 1..149 1..149 780 100 Plus
Dsim\GD18565-PA 136 GD18565-PA 2..135 15..148 336 49.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22676-PA 149 GJ22676-PA 17..149 17..149 638 91 Plus
Dvir\GJ22675-PA 136 GJ22675-PA 2..135 15..148 333 49.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11811-PA 149 GK11811-PA 17..149 17..149 641 91.7 Plus
Dwil\GK11810-PA 136 GK11810-PA 2..135 15..148 334 49.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25898-PA 149 GE25898-PA 1..149 1..149 780 100 Plus
Dyak\GE25897-PA 136 GE25897-PA 2..135 15..148 333 48.5 Plus