BDGP Sequence Production Resources |
Search the DGRC for RE66485
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 664 |
Well: | 85 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11760-RB |
Protein status: | RE66485.pep: gold |
Sequenced Size: | 1924 |
Gene | Date | Evidence |
---|---|---|
CG11760-RB | 2008-08-11 | Manual selection by Sue Celniker |
CG11760 | 2008-12-18 | 5.12 accounting |
1924 bp assembled on 2008-11-19
GenBank Submission: BT053750.1
> RE66485.complete AGTGTATAAATACAGTGCCCAACGTGAGCAACGCCGCCGTGTGAGCGATC CGGGAGATCAAATCGGTCCAATTTGCCGTAGACATCGAGGGGTAACAGGA GAAGCAGCAGAAGGAGGTGCTAAGCCGGCAGAAAGATGCCGCCCAAGCGT CCGCCACCGCTCGTGCCGAAGAAGCCAAATCCCAGCATGAACTACGAGGT GTTGATCTACCTCAACTCGTTCTACTTTGGCATGTTCGCCTGTTGCGAGA TGGCCATGGGCCTCCTGAAGGCCATCAATCTCAGCTACACGGGACATACT CTAGCCCTGGACACGGGGGTGATGATTAGCTTCATTGTCTTTGAGACGAT CCGATTGATAATGGGGCGCATGAGTTCGCTGGCCGATCGAGGCTGGTCGG CCATACTGTCGGTCTTCATGACCGCCCCCTGCTTTGTGGGCGTCTCCTAT CTACTGCTGCTCCAGACCTACCGACTGCGCCTGGAGTACTGCCTGTGCAC GCTGCAGATCGCCCTTTACCTGACCGAGGTGTGGTATGCCATCGTCTTCG TTTTCTCGCTGTGTCGTCCAGTAACTTATGATTAGCCATATAGACAGAAA CATCCAACAGCCAACTAGCAGCAAATATACATGCGAAAGTTTAGCAATCT ATAAGATCGAAAAAGGATAATATGCGGTGTAAGGAAATTTAATGAATTTG AAAAGCAGTAGGCAGCTGAATTGCTCATGGCCGTGGAGAAGAGAAACCAA ACAGAAAGAAAAAAAAAACAAAACAAAACACATATGTAGCATATTAATAA TTATGTATAGTAAGGTTTATGATAACATACACACACTCTTATATACATAT ATTTAACGGTTTTATATACAAAAATTGTTAACATTTAAGCATCAATTGGA ACCAATATAAGACAACAAGCAAAACCTAAAACTTGAATAATTTTCACAAT TTTAAGATGAAAATTTTTTTGTAAAAAGAAAAATATCGAAAAACAGCCGA AAAACAAATTTGACGTGTGGAAATAATAATTTATAATAGTTCACAGATAG CTCGAATCTTAAAAAGAATTGTAAAAAAATCAGTGGAATGTCTCACAAAA TCTAGTCAGCATCAAAATCATGAAAAACAAATGGCCGAAAGGCCATTAAA AAAATTCATTACCACTAAGAGTCAGCGTTTAGTAGTTCATACCAATATTC AAAAGGCGGAGAACAACATAATTAAGCCCAGTTAAAAGTCTAGACCATGT GTGTACTTTAATGAAACTACTTTATATAAACCTAGCAAATAGCGTAAATA ACATTTTCAAGACGTCACTAAAAACAATGCAAACCCGAGCGGGCAACCGT TTACTAGAAAGCGAACAACAAATTAGCTAAATCATATAAAACATTTATAG AGTGTTAAAAACTAGGCGAAAACCCTCCATTACACTTCTCCCCAATTCAG CCTATTGGCAACTCGAAACGCCCTTTAAATCACGCTCAATTATCCCCGCC TGATAGGATCCGAGGATTGCAGCTCCTCCAATGCTAGTCACTAATGTTCA CAAACATTTTCTAAGCTAGACCGAAGATTGTGTAATAATTTGATAAGACC TTTGTGTGGTTTCATAGCAAAATAACGCACAAATCGATAACAAAAACTCT CAACAGTCCACAAATCTCATGCTTTTAAAACAAAAGAAATAATTTTACTG AAACCAAACAGCTGGAAGCTAGAAGCTGAAAGAAAACCAAAGCCACATCC TACGTTGAATAATTTACCTGTATAATATTTATGTCATTTCGTTAAACGCA AAATGTTAACATACTTTTAAAGCGCGTGTAAAACGGATAGTTAATAAAAT AACGACAACAATATTTAAAAGAACATATACACTCGATGAAAATGAATATT AAAGATCGAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4545170..4545560 | 1..391 | 99 | -> | Plus |
chr3R | 4545776..4547292 | 392..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RB | 1..450 | 136..585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RB | 1..450 | 136..585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RB | 1..450 | 136..585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RB | 1..450 | 136..585 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RB | 1..1908 | 1..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8116-RB | 1303..2821 | 390..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RB | 1..1908 | 1..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11760-RB | 1..1908 | 1..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8719198..8719588 | 1..391 | 99 | -> | Plus |
3R | 8719804..8721320 | 392..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8719198..8719588 | 1..391 | 99 | -> | Plus |
3R | 8719804..8721320 | 392..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8719198..8719588 | 1..391 | 99 | -> | Plus |
3R | 8719804..8721320 | 392..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4544920..4545310 | 1..391 | 99 | -> | Plus |
arm_3R | 4545526..4547042 | 392..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8460029..8460419 | 1..391 | 99 | -> | Plus |
3R | 8460635..8462151 | 392..1908 | 99 | Plus |
Translation from 135 to 584
> RE66485.hyp MPPKRPPPLVPKKPNPSMNYEVLIYLNSFYFGMFACCEMAMGLLKAINLS YTGHTLALDTGVMISFIVFETIRLIMGRMSSLADRGWSAILSVFMTAPCF VGVSYLLLLQTYRLRLEYCLCTLQIALYLTEVWYAIVFVFSLCRPVTYD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11760-PB | 149 | CG11760-PB | 1..149 | 1..149 | 786 | 100 | Plus |
CG8116-PC | 136 | CG8116-PC | 2..135 | 15..148 | 346 | 48.5 | Plus |
CG8116-PB | 136 | CG8116-PB | 2..135 | 15..148 | 346 | 48.5 | Plus |
CG8116-PA | 136 | CG8116-PA | 2..135 | 15..148 | 346 | 48.5 | Plus |
Translation from 135 to 584
> RE66485.pep MPPKRPPPLVPKKPNPSMNYEVLIYLNSFYFGMFACCEMAMGLLKAINLS YTGHTLALDTGVMISFIVFETIRLIMGRMSSLADRGWSAILSVFMTAPCF VGVSYLLLLQTYRLRLEYCLCTLQIALYLTEVWYAIVFVFSLCRPVTYD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18183-PA | 149 | GF18183-PA | 17..149 | 17..149 | 654 | 94 | Plus |
Dana\GF18182-PA | 136 | GF18182-PA | 2..135 | 15..148 | 315 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12372-PA | 149 | GG12372-PA | 1..149 | 1..149 | 772 | 98.7 | Plus |
Dere\GG12263-PA | 136 | GG12263-PA | 2..135 | 15..148 | 333 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18573-PA | 149 | GH18573-PA | 17..149 | 17..149 | 620 | 89.5 | Plus |
Dgri\GH18572-PA | 136 | GH18572-PA | 2..135 | 15..148 | 333 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11760-PB | 149 | CG11760-PB | 1..149 | 1..149 | 786 | 100 | Plus |
TMEM216-PC | 136 | CG8116-PC | 2..135 | 15..148 | 346 | 48.5 | Plus |
TMEM216-PB | 136 | CG8116-PB | 2..135 | 15..148 | 346 | 48.5 | Plus |
TMEM216-PA | 136 | CG8116-PA | 2..135 | 15..148 | 346 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22391-PA | 149 | GI22391-PA | 17..149 | 17..149 | 628 | 88.7 | Plus |
Dmoj\GI22390-PA | 136 | GI22390-PA | 2..135 | 15..148 | 333 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12473-PA | 149 | GL12473-PA | 12..149 | 12..149 | 681 | 92 | Plus |
Dper\GL12472-PA | 136 | GL12472-PA | 2..135 | 15..148 | 335 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27519-PA | 149 | GA27519-PA | 12..149 | 12..149 | 681 | 92 | Plus |
Dpse\GA20835-PA | 136 | GA20835-PA | 2..135 | 15..148 | 335 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23755-PA | 149 | GM23755-PA | 1..149 | 1..149 | 780 | 100 | Plus |
Dsec\GM23754-PA | 136 | GM23754-PA | 2..135 | 15..148 | 336 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18566-PA | 149 | GD18566-PA | 1..149 | 1..149 | 780 | 100 | Plus |
Dsim\GD18565-PA | 136 | GD18565-PA | 2..135 | 15..148 | 336 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22676-PA | 149 | GJ22676-PA | 17..149 | 17..149 | 638 | 91 | Plus |
Dvir\GJ22675-PA | 136 | GJ22675-PA | 2..135 | 15..148 | 333 | 49.3 | Plus |