Clone RE66512 Report

Search the DGRC for RE66512

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:665
Well:12
Vector:pFlc-1
Associated Gene/TranscriptGlut4EF-RC
Protein status:RE66512.pep: gold
Preliminary Size:210
Sequenced Size:3433

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12418 2002-01-01 Sim4 clustering to Release 2
CG12802 2002-05-30 Blastp of sequenced clone
CG34360 2008-04-29 Release 5.5 accounting
CG12418 2008-05-09 Release 5.5 accounting
CG34360 2008-08-15 Release 5.9 accounting
CG34360 2008-12-18 5.12 accounting

Clone Sequence Records

RE66512.complete Sequence

3433 bp (3433 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118631

> RE66512.complete
AGTCTCTGATAGCCAACTCTCGGAAGCAGACCGATAAGCGCTTTTCGGGC
AATTCCGCCAAACCAAAACAACTGAAAAATACCCAACAGCCAAGTGAAAA
GCCAAGCAAACTAAGTTGTAGCCAAAAACCCAAGACAAACGGGCCCTCTT
CTGGTGTTCCGTTTAGTTTTTTTGGGCAATTTTGAAGCAAAATAGCCGCA
TTCACAAAGCGAAACGCAAAAAACCTAAAAGTCAAAACAAATCAGTGCAG
CAGCCGCCAATTGCATCGCATATTGCTCTCTGTGTTGTGTCAGTGTGTTG
TGTGTATAAGTGTGCGTGTGTGTGTGAGTGCTGGTAAGAAAACTGAGAGA
AAAGTGAAAAGTAACGACCGGCAAAAGCGCGAAAAACGAAAAACAAAAAA
AACTTTCCCCGCAGGAAACTCGAACTGCAAGCTGACGTTACAAGCGGTCA
AAATTGGATTATGCTTAGGCACAAACGCAACTGCCACGCCATTCAGACGC
CCAGCGACGCCGAGCATGTGAAGTTAAAGCCGCATTTTCATCCGCCCCAG
TGGCTCCTGCACCGCGTCACCTTCTCTTTGGAGCTGTATCACAAGAATAT
CATCAAGAAACTGCCCAGTCTTGGCCAATTTCACGTTTACCGGCTGACCA
AGAACGTCTGCCAGACTTAAGTAATACCCATAACAAATATCCCCATATAG
TCCGCAATAAACTCCACAAAAAAGACAAAGTGCGTTTAATAACCATTACA
AAAAAAGTGTAACTGATTGGGAAGAAGTGTGCAACAAATATCCACAAAAT
CAAATACTCAAGTGCAATAAAAAAAGTAAAAGTGATTAAAGTGCGAAAAG
AAAATGTGGCCAACCATTAAGGCCAAGATCAAGTTCTAAGTTCAAATAAA
CAGACGTAAAAAAAGACTAGAAAATCTAGCGTGTTTTAAAGCGCTGGAAA
CTAAAATAACCCCCCCTGAAAGTAGTATAACCGAACGTACAAAAATGTCC
ACCGGCCGCCGTTTGGCCAAGCGCTCCATCATCGGCACCAAGGTGTGCGC
CAAGGGTCCGGATGGCCTCTGGTACTCCGGCACCATATCCGACGTGAAAA
CGCCGCCCTCGTACAGCGGACCGCTCTCGCCGCCGCCGCCGCCCACTTTT
GTGGTGCCCGGCGAGGCACCGATTAATGCCGATACGCGCTACCTGGTCCG
TTTCGATTTCAAGACCGCCGTCGAGTCCCCAACCGCTACCACGTCGTCCG
CGGCCTCGACCTCGTCCACATCCTCCACAGATCCGTCGGTCATCGTGGAA
ACGCGTCGCGCTGCCAACGTACACATCAGTCCCGCTCAGGCACTGCGTCG
CAGCGCCATGATCAAGGAGTTCCGCGAGTCGGATCTTATTGGACCCGGAT
TCCGGTCCATCATGGACACCGAACTGCAGCCTGGCCAGCGGGTCTACTTC
ACCTACAATGGACGCGAGCAGAGCGGCGATGTCGTCAAACACGACGCTAC
CAAGGATGAGGTGATTGTCAAGATCACAACAGTTGGAAATGAGGAACCCA
TTGAGCTGAAGAAGCGACTGGAGGAAGTGCGTCTGCTGGAATCGCGACGC
TCCGCCCGTCTGGCAGACCAGGATCGCGACACGGACTTTGCCAGACTCGC
CGACATGAGTGGCGAACGCCGCAGAACCACCACACACAGTATTGAGGTGC
CATCGCAGCTGACGGCGCAGCACAATTCCCGGAAACGTCCGCCCAGCGAT
CACCAGGACTACGGCAACTATCTGGAAACATGCCGTGCCGCCGAGATTCT
GTCATCGATGAAGTTGCAGAGTCCGCATGGCTGTAGGTCATCCTCCTTTT
CCGACCCTGTCACACCCCCTTTTCGATCACGCCTACATATAAGCTAATTA
ATTCTATCCATTTCACCCCAGCAATGGCCGACAAGTGCTCGAGTCCCGGC
AGCAGCTCTTCGGCTTCCTGGAGCTCCGGTTCCCCGTCGCCGCCATTGAG
TGACGACGGCCACGCCCACCACAGCCCACACAATATCATGTCGCCCCACG
ATGCGGACAACGCACGCACACGCACAGCATCCGTGTCCACGTCGGACGAG
GGCATTGTCATCGACTACAAGGAGGAGCGCAAGAAAAAGGTGGGTGATTC
GATCTAAGGCCCCAACATCTAGATATAAGAAACATATAGAGATTGGTGTA
CAAGAATGCGGTCAGAAGAATCTGGGCTAACGGCGGTGGAGCGTGACATT
TTGTTACATTTTAATTGCAACTTTGTGTATAGATTTTAATTGCTATAATT
ATGTAAATGTCGGTCTGTTCTTGGCACGGCCACACGGCGTATGCTTGATG
CCCAATACTCATACGCAATGTAGCGCTGCTGCTGCCGGCGAAAGAATACA
GAATATATAGAATATCAAATAAATGTCGACAATGATTCAAGCACAGGAGA
ATGGCAACGCATCAATCACACAAAAGGGCAATGTCAGCAGCTCGTTAACT
TGTCAAACACACAGACACACACAAACACACACACCGCACACACGGCGAAA
TCCAACAAAATCAATAACCCCCAGCCATACGATACCGATTTTCAGGCATA
CTCCGAGAGTTCTAGCTCTTTAATTAATTATGTTTGAACTTTAAGGGTCT
CAGACCGAGAAACCGAAACAACCGAAACTTACGCAACTGAAAACCAGCAC
GGAAACGAACAGCAACGCCCCCATCCAGAAAACTTCTGCCCGTCTGCCTT
TTGTTTGCCCAACTAGTTACGCTTTCTCACCCGCTCGTGTGTTTGGCTAT
TTCGTTTAGAGCTTTTAAGGGCTCTTAATAGCAAACAAACAAAAACCTAA
AAAACGAGCAGCCGGCAACGACAGAAATAACAACAACCATAGCCGAGTAC
AAATATCAAAGTGAGCAGCAGCCGCGGTAGAATATGTTAACCTTGAAAGT
CTGATTAGATTTTCATATGGTGGCTATATGTTTTATTTACACAACGTCAA
GCCCAAAGCAACAACGAAAAAATAATACACTTGACCAAAAGAGTTTGATT
GGTATATTTTATATTGGAAAATATTCAACACTTGATCCATGATGTAAATC
ATTTAAATATATTCAGCCCATCAGATTGCTGTTTAGAATATACAATGACC
ATTGCCCCCAACCCATATGATTCATACCTAGGGCGTTGAGTCTATTGACT
TGATAAATAAGGATTGGAAATTTACCGGACTCCCCATAGCGACTTAACTT
CTCGCCCAAGTCCAATCAATTTTCCACTCGTTTCAATTAGTCAAACGTTT
TCGAATCTTGCTGCCAGCAATTGCACTTTCACTTTTCATATACCTGTTGC
ACAACCGAGCCGAAAAAGCTGACCAAAGCGTCAAACTTCCTGTTCCGTTC
GTCTACAAAAGAAAAAACAAAAAAAAAAAAAAA

RE66512.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG34360-RC 3431 CG34360-RC 3..3431 1..3429 17130 99.9 Plus
CG34360-RD 4797 CG34360-RD 1..1832 1..1832 9160 100 Plus
CG34360-RA 4353 CG34360-RA 7..1838 1..1832 9160 100 Plus
CG34360-RD 4797 CG34360-RD 1833..2060 1922..2149 1110 99.1 Plus
CG34360-RA 4353 CG34360-RA 1839..2056 1922..2139 1090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5769217..5770909 1726..3418 8360 99.6 Plus
chr3R 27901430 chr3R 5700510..5702052 1..1544 7670 99.9 Plus
chr3R 27901430 chr3R 5756090..5756273 1542..1725 920 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9943481..9945188 1726..3433 8510 99.9 Plus
3R 32079331 3R 9874681..9876224 1..1544 7720 100 Plus
3R 32079331 3R 9930362..9930545 1542..1725 920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9684312..9686019 1726..3433 8510 99.8 Plus
3R 31820162 3R 9615512..9617055 1..1544 7720 100 Plus
3R 31820162 3R 9671193..9671376 1542..1725 920 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:32:09 has no hits.

RE66512.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:33:14 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5700510..5702051 1..1543 96 -> Plus
chr3R 5756092..5756273 1544..1725 100 -> Plus
chr3R 5769217..5770903 1726..3412 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:26:29 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RC 1..903 995..1897 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:35:55 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RC 1..903 995..1897 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:01 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RC 1..903 995..1897 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:29 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RC 1..903 995..1897 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:29 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RC 1..903 995..1897 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:26:28 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RC 1..3418 1..3418 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:35:55 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RC 1..3418 1..3418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:01 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RC 1..3418 1..3418 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:29 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RC 1..3418 1..3418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:29 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RC 1..3418 1..3418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:14 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9874681..9876223 1..1543 100 -> Plus
3R 9930364..9930545 1544..1725 100 -> Plus
3R 9943481..9945173 1726..3418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:14 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9874681..9876223 1..1543 100 -> Plus
3R 9930364..9930545 1544..1725 100 -> Plus
3R 9943481..9945173 1726..3418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:14 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9874681..9876223 1..1543 100 -> Plus
3R 9930364..9930545 1544..1725 100 -> Plus
3R 9943481..9945173 1726..3418 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:01 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5700403..5701945 1..1543 100 -> Plus
arm_3R 5756086..5756267 1544..1725 100 -> Plus
arm_3R 5769203..5770895 1726..3418 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:00 Download gff for RE66512.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9615512..9617054 1..1543 100 -> Plus
3R 9671195..9671376 1544..1725 100 -> Plus
3R 9684312..9686004 1726..3418 99   Plus

RE66512.pep Sequence

Translation from 994 to 1896

> RE66512.pep
MSTGRRLAKRSIIGTKVCAKGPDGLWYSGTISDVKTPPSYSGPLSPPPPP
TFVVPGEAPINADTRYLVRFDFKTAVESPTATTSSAASTSSTSSTDPSVI
VETRRAANVHISPAQALRRSAMIKEFRESDLIGPGFRSIMDTELQPGQRV
YFTYNGREQSGDVVKHDATKDEVIVKITTVGNEEPIELKKRLEEVRLLES
RRSARLADQDRDTDFARLADMSGERRRTTTHSIEVPSQLTAQHNSRKRPP
SDHQDYGNYLETCRAAEILSSMKLQSPHGCRSSSFSDPVTPPFRSRLHIS
*

RE66512.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17847-PA 191 GF17847-PA 1..182 1..183 615 70.6 Plus
Dana\GF17848-PA 534 GF17848-PA 1..54 221..273 185 74.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17247-PA 197 GG17247-PA 1..192 1..188 805 88.5 Plus
Dere\GG17269-PA 533 GG17269-PA 1..59 221..279 303 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14146-PA 193 GH14146-PA 1..179 1..183 563 60.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Glut4EF-PC 300 CG34360-PC 1..300 1..300 1541 100 Plus
Glut4EF-PH 741 CG34360-PH 1..288 1..288 1437 97.6 Plus
Glut4EF-PG 950 CG34360-PG 1..288 1..288 1437 97.6 Plus
Glut4EF-PA 741 CG34360-PA 1..288 1..288 1437 97.6 Plus
Glut4EF-PD 361 CG34360-PD 1..288 1..288 1437 97.6 Plus
Glut4EF-PE 137 CG34360-PE 1..68 221..288 320 89.7 Plus
Glut4EF-PF 521 CG34360-PF 1..68 221..288 320 89.7 Plus
Glut4EF-PB 521 CG34360-PB 1..68 221..288 320 89.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10676-PA 197 GI10676-PA 1..196 1..183 650 69.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27194-PA 202 GL27194-PA 1..201 1..183 599 69.7 Plus
Dper\GL27195-PA 514 GL27195-PA 1..64 221..279 166 62.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30116-PE 764 GA30116-PE 1..313 1..279 935 68.9 Plus
Dpse\GA30116-PC 411 GA30116-PC 1..300 1..283 932 70.3 Plus
Dpse\GA30116-PD 159 GA30116-PD 1..64 221..279 169 62.1 Plus
Dpse\GA30116-PB 477 GA30116-PB 1..64 221..279 166 62.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23848-PA 518 GM23848-PA 1..59 221..279 285 93.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15150-PA 189 GD15150-PA 1..183 1..183 945 98.4 Plus
Dsim\GD18656-PA 519 GD18656-PA 1..59 221..279 285 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23028-PA 192 GJ23028-PA 1..191 1..183 648 69.6 Plus
Dvir\GJ23029-PA 587 GJ23029-PA 4..105 183..279 303 67.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12759-PA 265 GK12759-PA 1..196 1..183 632 67.5 Plus
Dwil\GK12758-PA 188 GK12758-PA 1..61 221..279 145 56.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25997-PA 190 GE25997-PA 1..184 1..183 923 96.2 Plus
Dyak\GE25999-PA 527 GE25999-PA 1..59 221..279 293 93.2 Plus

RE66512.hyp Sequence

Translation from 994 to 1896

> RE66512.hyp
MSTGRRLAKRSIIGTKVCAKGPDGLWYSGTISDVKTPPSYSGPLSPPPPP
TFVVPGEAPINADTRYLVRFDFKTAVESPTATTSSAASTSSTSSTDPSVI
VETRRAANVHISPAQALRRSAMIKEFRESDLIGPGFRSIMDTELQPGQRV
YFTYNGREQSGDVVKHDATKDEVIVKITTVGNEEPIELKKRLEEVRLLES
RRSARLADQDRDTDFARLADMSGERRRTTTHSIEVPSQLTAQHNSRKRPP
SDHQDYGNYLETCRAAEILSSMKLQSPHGCRSSSFSDPVTPPFRSRLHIS
*

RE66512.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Glut4EF-PC 300 CG34360-PC 1..300 1..300 1541 100 Plus
Glut4EF-PD 361 CG34360-PD 1..288 1..288 1437 97.6 Plus
Glut4EF-PH 741 CG34360-PH 1..288 1..288 1437 97.6 Plus
Glut4EF-PA 741 CG34360-PA 1..288 1..288 1437 97.6 Plus
Glut4EF-PG 950 CG34360-PG 1..288 1..288 1437 97.6 Plus