BDGP Sequence Production Resources |
Search the DGRC for RE66546
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 665 |
Well: | 46 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10219-RA |
Protein status: | RE66546.pep: gold |
Sequenced Size: | 908 |
Gene | Date | Evidence |
---|---|---|
CG10219 | 2001-12-14 | Blastp of sequenced clone |
CG10219 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10219 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10219 | 2008-04-29 | Release 5.5 accounting |
CG10219 | 2008-08-15 | Release 5.9 accounting |
CG10219 | 2008-12-18 | 5.12 accounting |
908 bp (908 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071617
> RE66546.complete GAGGCCAGTGCTGTGTAATTTTTTAGACAAATCGGCCCAAACCGAACGGA GCGATAGAGTTTTTATTTTGAGCTGAAAATTCTCAATATTTACACATCCC AACATGTCCCTCTCGTTGCTTCTGCGTGGCGCTGTCCGTTGCAATGCCGC AAATCTTGTTAAGTCGGCTCGCATCACTCCCCTGAAGAGCTACTCCACCC TGGTGGCCAATGTCCAGCGGAAGGCGGTGGTCCAGCCCCTGGCCGTGGCC AAGATTGTAGCGCCCGTCGTGCGCGAGATCTCCGTGAGTGCGCCCCGCAT GGCTTCCGCTGGATCCAGCCACACCCTGCTCTGGACTGTGGAGCGAATTG TGTCCGCCGGCCTACTGGCCGTCATTCCAGCTGCCTTCATAGCTCCATCC CAGGTATTGGACGCCCTCATGGCCATCTCTGTCGTCATCCACACCCATTG GGGCGTGGAGGCCATGGTAGTTGACTACATGCGGCCATCTGTCGTTGGAA ACGTCCTGCCCAAGGTAGCCCACATTGCGCTGATCATCATCTCGGTGGCC ACGCTGGGCGGCCTCTTCTACTTCATCCAAAATGATGTGGGTCTGGCCAA TGGTATCAAGCGCTTCTGGGCCATCAAGGGCAAGGATGCCGAGAAGGCTT AAATGTCAAAGGAGCAATCAGTTGATGAACCACGAAACACCAGTTATTTA TTCATAGTTTCGCGATAAGCATTAAATAAAGAATTGTAAAAAGTCACAGC TGCACAGAGCGGGTTTTGTAGAAAATTGTATATTCAACAAGAAAATCAGC ACTAAAGTAGTTGGGTAACAGGCACCACCTTTGTTACGTATGGTAATCTA CTGTAAACAATAAATTTGGGCTATTGGCCAGGTTTGGTCATCAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19582891..19583332 | 891..450 | 2195 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 19583392..19583581 | 451..262 | 950 | 100 | Minus |
chr3R | 27901430 | chr3R | 19583860..19584001 | 146..5 | 710 | 100 | Minus |
chr3R | 27901430 | chr3R | 19583653..19583769 | 262..146 | 585 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23759483..23759924 | 891..450 | 2195 | 99.8 | Minus |
3R | 32079331 | 3R | 23759984..23760173 | 451..262 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23760452..23760593 | 146..5 | 710 | 100 | Minus |
3R | 32079331 | 3R | 23760245..23760361 | 262..146 | 585 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23500314..23500755 | 891..450 | 2195 | 99.7 | Minus |
3R | 31820162 | 3R | 23500815..23501004 | 451..262 | 950 | 100 | Minus |
3R | 31820162 | 3R | 23501283..23501424 | 146..5 | 710 | 100 | Minus |
3R | 31820162 | 3R | 23501076..23501192 | 262..146 | 585 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\Vege | 884 | Dwil\Vege VEGE 884bp Derived from AF518730. | 327..377 | 886..835 | 113 | 71.2 | Minus |
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 4332..4359 | 722..749 | 113 | 89.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19582890..19583331 | 451..892 | 99 | <- | Minus |
chr3R | 19583393..19583580 | 263..450 | 100 | <- | Minus |
chr3R | 19583653..19583768 | 147..262 | 100 | <- | Minus |
chr3R | 19583860..19584004 | 1..146 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..549 | 104..652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..549 | 104..652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..549 | 104..652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..549 | 104..652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..549 | 104..652 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..888 | 2..889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..888 | 2..889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 4..894 | 1..891 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 1..888 | 2..889 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10219-RA | 4..894 | 1..891 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23759482..23759923 | 451..892 | 99 | <- | Minus |
3R | 23759985..23760172 | 263..450 | 100 | <- | Minus |
3R | 23760245..23760360 | 147..262 | 100 | <- | Minus |
3R | 23760452..23760596 | 1..146 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23759482..23759923 | 451..892 | 99 | <- | Minus |
3R | 23759985..23760172 | 263..450 | 100 | <- | Minus |
3R | 23760245..23760360 | 147..262 | 100 | <- | Minus |
3R | 23760452..23760596 | 1..146 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23759482..23759923 | 451..892 | 99 | <- | Minus |
3R | 23759985..23760172 | 263..450 | 100 | <- | Minus |
3R | 23760245..23760360 | 147..262 | 100 | <- | Minus |
3R | 23760452..23760596 | 1..146 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19585204..19585645 | 451..892 | 99 | <- | Minus |
arm_3R | 19585707..19585894 | 263..450 | 100 | <- | Minus |
arm_3R | 19585967..19586082 | 147..262 | 100 | <- | Minus |
arm_3R | 19586174..19586318 | 1..146 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23501076..23501191 | 147..262 | 100 | <- | Minus |
3R | 23501283..23501427 | 1..146 | 98 | Minus | |
3R | 23500816..23501003 | 263..450 | 100 | <- | Minus |
3R | 23500313..23500754 | 451..892 | 99 | <- | Minus |
Translation from 103 to 651
> RE66546.hyp MSLSLLLRGAVRCNAANLVKSARITPLKSYSTLVANVQRKAVVQPLAVAK IVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQ VLDALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVAT LGGLFYFIQNDVGLANGIKRFWAIKGKDAEKA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10219-PA | 182 | CG10219-PA | 1..182 | 1..182 | 888 | 100 | Plus |
Translation from 103 to 651
> RE66546.pep MSLSLLLRGAVRCNAANLVKSARITPLKSYSTLVANVQRKAVVQPLAVAK IVAPVVREISVSAPRMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQ VLDALMAISVVIHTHWGVEAMVVDYMRPSVVGNVLPKVAHIALIIISVAT LGGLFYFIQNDVGLANGIKRFWAIKGKDAEKA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18741-PA | 178 | GF18741-PA | 1..177 | 1..178 | 739 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12408-PA | 182 | GG12408-PA | 1..182 | 1..182 | 907 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11519-PA | 181 | GH11519-PA | 4..180 | 4..179 | 755 | 79.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SdhD-PA | 182 | CG10219-PA | 1..182 | 1..182 | 888 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22398-PA | 182 | GI22398-PA | 4..182 | 4..181 | 734 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24273-PA | 184 | GL24273-PA | 1..180 | 1..181 | 820 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10165-PA | 184 | GA10165-PA | 1..180 | 1..181 | 820 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23542-PA | 182 | GM23542-PA | 1..182 | 1..182 | 910 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18356-PA | 182 | GD18356-PA | 1..182 | 1..182 | 915 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24648-PA | 184 | GJ24648-PA | 4..182 | 4..181 | 734 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22767-PA | 181 | GK22767-PA | 1..179 | 1..181 | 733 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23927-PA | 182 | GE23927-PA | 1..182 | 1..182 | 890 | 95.1 | Plus |