BDGP Sequence Production Resources |
Search the DGRC for RE66734
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 667 |
Well: | 34 |
Vector: | pFlc-1 |
Associated Gene/Transcript | ND75-RA |
Protein status: | RE66734.pep: gold |
Preliminary Size: | 2519 |
Sequenced Size: | 2608 |
Gene | Date | Evidence |
---|---|---|
CG2286 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2286 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2286 | 2003-07-07 | Blastp of sequenced clone |
ND75 | 2008-04-29 | Release 5.5 accounting |
ND75 | 2008-08-15 | Release 5.9 accounting |
ND75 | 2008-12-18 | 5.12 accounting |
2608 bp (2608 high quality bases) assembled on 2003-07-07
GenBank Submission: BT011089
> RE66734.complete GACCAGCTGTCAACGCGGCAGTTGGCAACGCGGTCGGTCTGTCAAAGCAA AATCCGATAAAAAAAAAGTTGTCTCCACATTAAAAGATCACAGGAATATT TTCCAGCATTTCGAAAATATGATACGGGCACCGCTAGTCAAGGCGCTGGG CGCTCTGGGCTCGCCCACACATCAGATGGCCAGCCGGGCGGTGCGAACCA GCGCCATGGTGGCCCAGACACCGGCGAAAGCGCCCGAGAAGATCGAGGTC TTTGTGGATGACATTCCCGTGCAGGTGGTACCCGGCACCACTGTCCTCCA GGCTGCTGCTCAGATCGGCGTGGAGATACCCAGATTCTGCTACCACGAAC GTCTTGCGGTGGCCGGCAACTGCAGGATGTGCCTCGTCGAGGTGGAGAAG AGTCCCAAGCCAGTGGCCGCCTGCGCTATGCCCGTGATGAAGGGCTGGCG CATCAAGACCAACTCGGATTTGACCCGCAAGGCGCGCGAGGGCGTCATGG AGTTCCTGCTGATGAACCATCCGCTGGATTGCCCCATCTGCGATCAGGGC GGCGAGTGCGATCTGCAGGATCAGGCCATGGCCTTCGGTTCCGATCGATC CCGCTTCACGGACATTAACTACACGGGCAAGCGCGCTGTCGAGGACAAGG ACATCGGACCGCTAGTCAAGACCATCATGACACGCTGCATCCACTGCACC CGCTGTGTGCGTTTCGCCTCCGAGATTGCCGGCGTTGATGACCTGGGCAC CACTGGCCGTGGCAACGACATGCAGATCGGCACCTACGTGGAGAAGCTCT TCCTTACCGAACTGTCCGGCAACGTGATCGACCTGTGCCCCGTGGGAGCG CTGACCAACAAGCCCTACAGTTTTGTGGCCCGTCCCTGGGAGATCCGTAA GGTGAGCAGCATCGATGTGCTGGACGCCGTCGGCAGCAACATTGTCGTCA GCACCCGCACCAATGAGGTGCTGCGCATCCTGCCCCGTGAGAACGAGGAC GTCAACGAGGAATGGCTTGCTGACAAATCGCGCTTCGCCTGCGACGGTCT GAAGCGCCAGCGCCTGGTGGCTCCCATGGTGCGCATGCCCAACGGCGAAC TACAGGCCGTAGAGTGGGAGGGTGCCCTCATCGCCGTGGCCAAGGCCATT AAGGCAGCCGGTGGACAGATTGCCGGTATTTCTGGCCAACTTGCCGACCT GGAGGCTCAGGTGGCCCTGAAGGATCTGCTGAACCGTCTGGGCAGCGAAG TGGTCGCCACTGAACAAGGATTTATTGCCGGAGGCACCGACAACCGTGCT AATTACCTCTTGAACAGCACCATTGCCGGTTTGGAGGAGGCCGACGCCGT TCTCCTGGTGGGCACCAATCCCCGTTACGAGGCTCCATTGGTCAACACCC GTTTGCGCAAGGCCTATGTGCACAACGAACTGCAGATTGCCTCGATTGGA CCCAAGATCGATCTGTCCTACGACCACGAGAACCTTGGCGCCGATGCCGC TTTAGTCAAGGACGTGTGCTCCGGAGCTCATGCCTTCTCCAAGGTCTTGG AGGGTGCCAAGAAGCCGGCCATCATTATTGGAGCCGATTTGTTGGAGCGT GCCGATGGTGCCGCCATTCACGCCACCGTTGCCGAGTACTGCAAGAAGCT GAAGAAGCCGAACTGGAACCCCTTCAATGTGCTGCAGACCAACGCCGCCC AGGTGGGCGCCCTCGATGTGGGCTACAAGGCCGGTGCACAGACCGCTGTG AAGGCTCAGCCCAAGGTGCTGTTCCTGTTGAACGCCGACGCTGGCAAGGT GACTCGCGAGCAGCTGCCCAAGGACTGCTTCGTGGTGTACATTGGATCGC ATGGTGACAACGGCGCCTCCATTGCCGATGCCGTTCTGCCTGGTGCCGCC TACACAGAGAAGCAGGGCATCTACGTGAACACGGAGGGCAGGCCGCAGCA GACGCTGCCTGGTGTTTCGCCACCGGGTATGGCTCGCGAGGACTGGAAGA TCCTGCGCGCTCTGTCCGAGGTGGTGGGCAAGCCGCTGCCGTACGACAAC CTGGACGAGCTGCGCAACCGTCTGGAGGATGTGGCGCCACATCTAACGCG CCTGGGCCAATTGGAGCCAGCCGGCGATGCCGGAGCAGCGGGCACTATTA GCAAATCCATCGGCGGTGGCGCCATCGATATTAAGCTAAAGGAGCTGCGC GACTACTTCATGACCGACGCCATTTCGCGCGCCTCGCCCACCATGGCCAA GTGCATATCGGCGGTCAACAAGCAGCAGCGGGAGAACGAGGCCAAGCAGA GTGTGGCTATCTAGGCGCCCACTCTCGCGTCTGATCTAAACTAATAACTA ATTAATGTTTTTTTTTAAACTCTGCCCTTCGTCCTTTCGCGCCGCACTCG CCCACTAATTAACGGACACAAAGACACCAGGACGAGCCGCGGGAAGAGCC AGCGCAGTAGCGGGATGAGGAGCACGATCGGCGGCTGCAGAGGCGCCAGC GCTGCGTCAGTTGTAAATGAAAAAGTCTTACGTTGTTCAAAACAAAGGAG TTATTCAATACGAAAAATAGGAAAACCAAAATAAAAATGTAATAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8141516..8142543 | 1660..633 | 5110 | 99.8 | Minus |
chrX | 22417052 | chrX | 8140967..8141456 | 2149..1660 | 2450 | 100 | Minus |
chrX | 22417052 | chrX | 8140464..8140907 | 2593..2150 | 2175 | 99.3 | Minus |
chrX | 22417052 | chrX | 8142611..8142944 | 633..300 | 1655 | 99.7 | Minus |
chrX | 22417052 | chrX | 8143013..8143202 | 302..113 | 950 | 100 | Minus |
chrX | 22417052 | chrX | 8143410..8143522 | 113..1 | 565 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 8249703..8250730 | 1660..633 | 5140 | 100 | Minus |
X | 23542271 | X | 8249154..8249643 | 2149..1660 | 2450 | 100 | Minus |
X | 23542271 | X | 8248643..8249094 | 2601..2150 | 2245 | 99.8 | Minus |
X | 23542271 | X | 8250798..8251131 | 633..300 | 1670 | 100 | Minus |
X | 23542271 | X | 8251200..8251389 | 302..113 | 950 | 100 | Minus |
X | 23542271 | X | 8251597..8251709 | 113..1 | 565 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 8257801..8258828 | 1660..633 | 5140 | 100 | Minus |
X | 23527363 | X | 8257252..8257741 | 2149..1660 | 2450 | 100 | Minus |
X | 23527363 | X | 8256741..8257192 | 2601..2150 | 2245 | 99.7 | Minus |
X | 23527363 | X | 8258896..8259229 | 633..300 | 1670 | 100 | Minus |
X | 23527363 | X | 8259298..8259487 | 302..113 | 950 | 100 | Minus |
X | 23527363 | X | 8259695..8259807 | 113..1 | 565 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8140464..8140907 | 2150..2593 | 99 | <- | Minus |
chrX | 8140967..8141455 | 1661..2149 | 100 | <- | Minus |
chrX | 8141516..8142542 | 634..1660 | 99 | <- | Minus |
chrX | 8142611..8142942 | 302..633 | 99 | <- | Minus |
chrX | 8143014..8143201 | 114..301 | 100 | <- | Minus |
chrX | 8143410..8143522 | 1..113 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RB | 1..2196 | 119..2314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RB | 1..2196 | 119..2314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RA | 1..2196 | 119..2314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RB | 1..2196 | 119..2314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RA | 1..2196 | 119..2314 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RA | 1..2519 | 44..2562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RA | 1..2519 | 44..2562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RA | 1..2571 | 23..2593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RA | 1..2519 | 44..2562 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ND75-RA | 1..2571 | 23..2593 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8249154..8249642 | 1661..2149 | 100 | <- | Minus |
X | 8248651..8249094 | 2150..2593 | 100 | <- | Minus |
X | 8249703..8250729 | 634..1660 | 100 | <- | Minus |
X | 8250798..8251129 | 302..633 | 100 | <- | Minus |
X | 8251201..8251388 | 114..301 | 100 | <- | Minus |
X | 8251597..8251709 | 1..113 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8249154..8249642 | 1661..2149 | 100 | <- | Minus |
X | 8248651..8249094 | 2150..2593 | 100 | <- | Minus |
X | 8249703..8250729 | 634..1660 | 100 | <- | Minus |
X | 8250798..8251129 | 302..633 | 100 | <- | Minus |
X | 8251201..8251388 | 114..301 | 100 | <- | Minus |
X | 8251597..8251709 | 1..113 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8249154..8249642 | 1661..2149 | 100 | <- | Minus |
X | 8248651..8249094 | 2150..2593 | 100 | <- | Minus |
X | 8249703..8250729 | 634..1660 | 100 | <- | Minus |
X | 8250798..8251129 | 302..633 | 100 | <- | Minus |
X | 8251201..8251388 | 114..301 | 100 | <- | Minus |
X | 8251597..8251709 | 1..113 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8145234..8145421 | 114..301 | 100 | <- | Minus |
arm_X | 8145630..8145742 | 1..113 | 100 | Minus | |
arm_X | 8142684..8143127 | 2150..2593 | 100 | <- | Minus |
arm_X | 8143187..8143675 | 1661..2149 | 100 | <- | Minus |
arm_X | 8143736..8144762 | 634..1660 | 100 | <- | Minus |
arm_X | 8144831..8145162 | 302..633 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8259695..8259807 | 1..113 | 100 | Minus | |
X | 8259299..8259486 | 114..301 | 100 | <- | Minus |
X | 8256749..8257192 | 2150..2593 | 100 | <- | Minus |
X | 8257252..8257740 | 1661..2149 | 100 | <- | Minus |
X | 8257801..8258827 | 634..1660 | 100 | <- | Minus |
X | 8258896..8259227 | 302..633 | 100 | <- | Minus |
Translation from 0 to 2313
> RE66734.hyp TSCQRGSWQRGRSVKAKSDKKKVVSTLKDHRNIFQHFENMIRAPLVKALG ALGSPTHQMASRAVRTSAMVAQTPAKAPEKIEVFVDDIPVQVVPGTTVLQ AAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGWR IKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRS RFTDINYTGKRAVEDKDIGPLVKTIMTRCIHCTRCVRFASEIAGVDDLGT TGRGNDMQIGTYVEKLFLTELSGNVIDLCPVGALTNKPYSFVARPWEIRK VSSIDVLDAVGSNIVVSTRTNEVLRILPRENEDVNEEWLADKSRFACDGL KRQRLVAPMVRMPNGELQAVEWEGALIAVAKAIKAAGGQIAGISGQLADL EAQVALKDLLNRLGSEVVATEQGFIAGGTDNRANYLLNSTIAGLEEADAV LLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLSYDHENLGADAA LVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAIHATVAEYCKKL KKPNWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKVLFLLNADAGKV TREQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQGIYVNTEGRPQQ TLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRNRLEDVAPHLTR LGQLEPAGDAGAAGTISKSIGGGAIDIKLKELRDYFMTDAISRASPTMAK CISAVNKQQRENEAKQSVAI*
Translation from 118 to 2313
> RE66734.pep MIRAPLVKALGALGSPTHQMASRAVRTSAMVAQTPAKAPEKIEVFVDDIP VQVVPGTTVLQAAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA ACAMPVMKGWRIKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQ DQAMAFGSDRSRFTDINYTGKRAVEDKDIGPLVKTIMTRCIHCTRCVRFA SEIAGVDDLGTTGRGNDMQIGTYVEKLFLTELSGNVIDLCPVGALTNKPY SFVARPWEIRKVSSIDVLDAVGSNIVVSTRTNEVLRILPRENEDVNEEWL ADKSRFACDGLKRQRLVAPMVRMPNGELQAVEWEGALIAVAKAIKAAGGQ IAGISGQLADLEAQVALKDLLNRLGSEVVATEQGFIAGGTDNRANYLLNS TIAGLEEADAVLLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLS YDHENLGADAALVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAI HATVAEYCKKLKKPNWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKV LFLLNADAGKVTREQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQG IYVNTEGRPQQTLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRN RLEDVAPHLTRLGQLEPAGDAGAAGTISKSIGGGAIDIKLKELRDYFMTD AISRASPTMAKCISAVNKQQRENEAKQSVAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19519-PA | 731 | GF19519-PA | 1..731 | 1..731 | 3651 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\ND75-PA | 811 | GG17973-PA | 81..811 | 1..731 | 3848 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11968-PA | 879 | GH11968-PA | 145..877 | 1..730 | 3473 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ND-75-PB | 731 | CG2286-PB | 1..731 | 1..731 | 3745 | 100 | Plus |
ND-75-PA | 731 | CG2286-PA | 1..731 | 1..731 | 3745 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14709-PA | 732 | GI14709-PA | 1..732 | 1..731 | 3472 | 88.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14171-PA | 670 | GL14171-PA | 1..670 | 1..731 | 3124 | 82.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15341-PA | 803 | GA15341-PA | 69..803 | 1..731 | 3560 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11194-PA | 731 | GM11194-PA | 1..731 | 1..731 | 3873 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16774-PA | 716 | GJ16774-PA | 8..716 | 1..731 | 3309 | 84.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10239-PA | 738 | GK10239-PA | 1..738 | 1..731 | 3540 | 90 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\ND75-PA | 731 | GE17466-PA | 1..731 | 1..731 | 3859 | 99 | Plus |