Clone RE66734 Report

Search the DGRC for RE66734

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:667
Well:34
Vector:pFlc-1
Associated Gene/TranscriptND75-RA
Protein status:RE66734.pep: gold
Preliminary Size:2519
Sequenced Size:2608

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2286 2002-01-01 Sim4 clustering to Release 2
CG2286 2003-01-01 Sim4 clustering to Release 3
CG2286 2003-07-07 Blastp of sequenced clone
ND75 2008-04-29 Release 5.5 accounting
ND75 2008-08-15 Release 5.9 accounting
ND75 2008-12-18 5.12 accounting

Clone Sequence Records

RE66734.complete Sequence

2608 bp (2608 high quality bases) assembled on 2003-07-07

GenBank Submission: BT011089

> RE66734.complete
GACCAGCTGTCAACGCGGCAGTTGGCAACGCGGTCGGTCTGTCAAAGCAA
AATCCGATAAAAAAAAAGTTGTCTCCACATTAAAAGATCACAGGAATATT
TTCCAGCATTTCGAAAATATGATACGGGCACCGCTAGTCAAGGCGCTGGG
CGCTCTGGGCTCGCCCACACATCAGATGGCCAGCCGGGCGGTGCGAACCA
GCGCCATGGTGGCCCAGACACCGGCGAAAGCGCCCGAGAAGATCGAGGTC
TTTGTGGATGACATTCCCGTGCAGGTGGTACCCGGCACCACTGTCCTCCA
GGCTGCTGCTCAGATCGGCGTGGAGATACCCAGATTCTGCTACCACGAAC
GTCTTGCGGTGGCCGGCAACTGCAGGATGTGCCTCGTCGAGGTGGAGAAG
AGTCCCAAGCCAGTGGCCGCCTGCGCTATGCCCGTGATGAAGGGCTGGCG
CATCAAGACCAACTCGGATTTGACCCGCAAGGCGCGCGAGGGCGTCATGG
AGTTCCTGCTGATGAACCATCCGCTGGATTGCCCCATCTGCGATCAGGGC
GGCGAGTGCGATCTGCAGGATCAGGCCATGGCCTTCGGTTCCGATCGATC
CCGCTTCACGGACATTAACTACACGGGCAAGCGCGCTGTCGAGGACAAGG
ACATCGGACCGCTAGTCAAGACCATCATGACACGCTGCATCCACTGCACC
CGCTGTGTGCGTTTCGCCTCCGAGATTGCCGGCGTTGATGACCTGGGCAC
CACTGGCCGTGGCAACGACATGCAGATCGGCACCTACGTGGAGAAGCTCT
TCCTTACCGAACTGTCCGGCAACGTGATCGACCTGTGCCCCGTGGGAGCG
CTGACCAACAAGCCCTACAGTTTTGTGGCCCGTCCCTGGGAGATCCGTAA
GGTGAGCAGCATCGATGTGCTGGACGCCGTCGGCAGCAACATTGTCGTCA
GCACCCGCACCAATGAGGTGCTGCGCATCCTGCCCCGTGAGAACGAGGAC
GTCAACGAGGAATGGCTTGCTGACAAATCGCGCTTCGCCTGCGACGGTCT
GAAGCGCCAGCGCCTGGTGGCTCCCATGGTGCGCATGCCCAACGGCGAAC
TACAGGCCGTAGAGTGGGAGGGTGCCCTCATCGCCGTGGCCAAGGCCATT
AAGGCAGCCGGTGGACAGATTGCCGGTATTTCTGGCCAACTTGCCGACCT
GGAGGCTCAGGTGGCCCTGAAGGATCTGCTGAACCGTCTGGGCAGCGAAG
TGGTCGCCACTGAACAAGGATTTATTGCCGGAGGCACCGACAACCGTGCT
AATTACCTCTTGAACAGCACCATTGCCGGTTTGGAGGAGGCCGACGCCGT
TCTCCTGGTGGGCACCAATCCCCGTTACGAGGCTCCATTGGTCAACACCC
GTTTGCGCAAGGCCTATGTGCACAACGAACTGCAGATTGCCTCGATTGGA
CCCAAGATCGATCTGTCCTACGACCACGAGAACCTTGGCGCCGATGCCGC
TTTAGTCAAGGACGTGTGCTCCGGAGCTCATGCCTTCTCCAAGGTCTTGG
AGGGTGCCAAGAAGCCGGCCATCATTATTGGAGCCGATTTGTTGGAGCGT
GCCGATGGTGCCGCCATTCACGCCACCGTTGCCGAGTACTGCAAGAAGCT
GAAGAAGCCGAACTGGAACCCCTTCAATGTGCTGCAGACCAACGCCGCCC
AGGTGGGCGCCCTCGATGTGGGCTACAAGGCCGGTGCACAGACCGCTGTG
AAGGCTCAGCCCAAGGTGCTGTTCCTGTTGAACGCCGACGCTGGCAAGGT
GACTCGCGAGCAGCTGCCCAAGGACTGCTTCGTGGTGTACATTGGATCGC
ATGGTGACAACGGCGCCTCCATTGCCGATGCCGTTCTGCCTGGTGCCGCC
TACACAGAGAAGCAGGGCATCTACGTGAACACGGAGGGCAGGCCGCAGCA
GACGCTGCCTGGTGTTTCGCCACCGGGTATGGCTCGCGAGGACTGGAAGA
TCCTGCGCGCTCTGTCCGAGGTGGTGGGCAAGCCGCTGCCGTACGACAAC
CTGGACGAGCTGCGCAACCGTCTGGAGGATGTGGCGCCACATCTAACGCG
CCTGGGCCAATTGGAGCCAGCCGGCGATGCCGGAGCAGCGGGCACTATTA
GCAAATCCATCGGCGGTGGCGCCATCGATATTAAGCTAAAGGAGCTGCGC
GACTACTTCATGACCGACGCCATTTCGCGCGCCTCGCCCACCATGGCCAA
GTGCATATCGGCGGTCAACAAGCAGCAGCGGGAGAACGAGGCCAAGCAGA
GTGTGGCTATCTAGGCGCCCACTCTCGCGTCTGATCTAAACTAATAACTA
ATTAATGTTTTTTTTTAAACTCTGCCCTTCGTCCTTTCGCGCCGCACTCG
CCCACTAATTAACGGACACAAAGACACCAGGACGAGCCGCGGGAAGAGCC
AGCGCAGTAGCGGGATGAGGAGCACGATCGGCGGCTGCAGAGGCGCCAGC
GCTGCGTCAGTTGTAAATGAAAAAGTCTTACGTTGTTCAAAACAAAGGAG
TTATTCAATACGAAAAATAGGAAAACCAAAATAAAAATGTAATAAAAAAA
AAAAAAAA

RE66734.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
ND75-RA 2670 ND75-RA 18..2618 1..2601 12990 99.9 Plus
ND75-RB 2784 ND75-RB 296..2784 113..2601 12430 99.9 Plus
ND75-RB 2784 ND75-RB 1..88 26..113 440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8141516..8142543 1660..633 5110 99.8 Minus
chrX 22417052 chrX 8140967..8141456 2149..1660 2450 100 Minus
chrX 22417052 chrX 8140464..8140907 2593..2150 2175 99.3 Minus
chrX 22417052 chrX 8142611..8142944 633..300 1655 99.7 Minus
chrX 22417052 chrX 8143013..8143202 302..113 950 100 Minus
chrX 22417052 chrX 8143410..8143522 113..1 565 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8249703..8250730 1660..633 5140 100 Minus
X 23542271 X 8249154..8249643 2149..1660 2450 100 Minus
X 23542271 X 8248643..8249094 2601..2150 2245 99.8 Minus
X 23542271 X 8250798..8251131 633..300 1670 100 Minus
X 23542271 X 8251200..8251389 302..113 950 100 Minus
X 23542271 X 8251597..8251709 113..1 565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8257801..8258828 1660..633 5140 100 Minus
X 23527363 X 8257252..8257741 2149..1660 2450 100 Minus
X 23527363 X 8256741..8257192 2601..2150 2245 99.7 Minus
X 23527363 X 8258896..8259229 633..300 1670 100 Minus
X 23527363 X 8259298..8259487 302..113 950 100 Minus
X 23527363 X 8259695..8259807 113..1 565 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:51:14 has no hits.

RE66734.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:52:06 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8140464..8140907 2150..2593 99 <- Minus
chrX 8140967..8141455 1661..2149 100 <- Minus
chrX 8141516..8142542 634..1660 99 <- Minus
chrX 8142611..8142942 302..633 99 <- Minus
chrX 8143014..8143201 114..301 100 <- Minus
chrX 8143410..8143522 1..113 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:15 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RB 1..2196 119..2314 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:20 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RB 1..2196 119..2314 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:58 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RA 1..2196 119..2314 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:00 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RB 1..2196 119..2314 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:13 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RA 1..2196 119..2314 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:32:33 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RA 1..2519 44..2562 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:20 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RA 1..2519 44..2562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:58 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RA 1..2571 23..2593 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:00 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RA 1..2519 44..2562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:13 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
ND75-RA 1..2571 23..2593 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:06 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
X 8249154..8249642 1661..2149 100 <- Minus
X 8248651..8249094 2150..2593 100 <- Minus
X 8249703..8250729 634..1660 100 <- Minus
X 8250798..8251129 302..633 100 <- Minus
X 8251201..8251388 114..301 100 <- Minus
X 8251597..8251709 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:06 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
X 8249154..8249642 1661..2149 100 <- Minus
X 8248651..8249094 2150..2593 100 <- Minus
X 8249703..8250729 634..1660 100 <- Minus
X 8250798..8251129 302..633 100 <- Minus
X 8251201..8251388 114..301 100 <- Minus
X 8251597..8251709 1..113 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:06 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
X 8249154..8249642 1661..2149 100 <- Minus
X 8248651..8249094 2150..2593 100 <- Minus
X 8249703..8250729 634..1660 100 <- Minus
X 8250798..8251129 302..633 100 <- Minus
X 8251201..8251388 114..301 100 <- Minus
X 8251597..8251709 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:58 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8145234..8145421 114..301 100 <- Minus
arm_X 8145630..8145742 1..113 100   Minus
arm_X 8142684..8143127 2150..2593 100 <- Minus
arm_X 8143187..8143675 1661..2149 100 <- Minus
arm_X 8143736..8144762 634..1660 100 <- Minus
arm_X 8144831..8145162 302..633 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:06 Download gff for RE66734.complete
Subject Subject Range Query Range Percent Splice Strand
X 8259695..8259807 1..113 100   Minus
X 8259299..8259486 114..301 100 <- Minus
X 8256749..8257192 2150..2593 100 <- Minus
X 8257252..8257740 1661..2149 100 <- Minus
X 8257801..8258827 634..1660 100 <- Minus
X 8258896..8259227 302..633 100 <- Minus

RE66734.hyp Sequence

Translation from 0 to 2313

> RE66734.hyp
TSCQRGSWQRGRSVKAKSDKKKVVSTLKDHRNIFQHFENMIRAPLVKALG
ALGSPTHQMASRAVRTSAMVAQTPAKAPEKIEVFVDDIPVQVVPGTTVLQ
AAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVAACAMPVMKGWR
IKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRS
RFTDINYTGKRAVEDKDIGPLVKTIMTRCIHCTRCVRFASEIAGVDDLGT
TGRGNDMQIGTYVEKLFLTELSGNVIDLCPVGALTNKPYSFVARPWEIRK
VSSIDVLDAVGSNIVVSTRTNEVLRILPRENEDVNEEWLADKSRFACDGL
KRQRLVAPMVRMPNGELQAVEWEGALIAVAKAIKAAGGQIAGISGQLADL
EAQVALKDLLNRLGSEVVATEQGFIAGGTDNRANYLLNSTIAGLEEADAV
LLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLSYDHENLGADAA
LVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAIHATVAEYCKKL
KKPNWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKVLFLLNADAGKV
TREQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQGIYVNTEGRPQQ
TLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRNRLEDVAPHLTR
LGQLEPAGDAGAAGTISKSIGGGAIDIKLKELRDYFMTDAISRASPTMAK
CISAVNKQQRENEAKQSVAI*

RE66734.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
ND75-PB 731 CG2286-PB 1..731 40..770 3745 100 Plus
ND75-PA 731 CG2286-PA 1..731 40..770 3745 100 Plus

RE66734.pep Sequence

Translation from 118 to 2313

> RE66734.pep
MIRAPLVKALGALGSPTHQMASRAVRTSAMVAQTPAKAPEKIEVFVDDIP
VQVVPGTTVLQAAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA
ACAMPVMKGWRIKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQ
DQAMAFGSDRSRFTDINYTGKRAVEDKDIGPLVKTIMTRCIHCTRCVRFA
SEIAGVDDLGTTGRGNDMQIGTYVEKLFLTELSGNVIDLCPVGALTNKPY
SFVARPWEIRKVSSIDVLDAVGSNIVVSTRTNEVLRILPRENEDVNEEWL
ADKSRFACDGLKRQRLVAPMVRMPNGELQAVEWEGALIAVAKAIKAAGGQ
IAGISGQLADLEAQVALKDLLNRLGSEVVATEQGFIAGGTDNRANYLLNS
TIAGLEEADAVLLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLS
YDHENLGADAALVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAI
HATVAEYCKKLKKPNWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKV
LFLLNADAGKVTREQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQG
IYVNTEGRPQQTLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRN
RLEDVAPHLTRLGQLEPAGDAGAAGTISKSIGGGAIDIKLKELRDYFMTD
AISRASPTMAKCISAVNKQQRENEAKQSVAI*

RE66734.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19519-PA 731 GF19519-PA 1..731 1..731 3651 93.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\ND75-PA 811 GG17973-PA 81..811 1..731 3848 98.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11968-PA 879 GH11968-PA 145..877 1..730 3473 88.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
ND-75-PB 731 CG2286-PB 1..731 1..731 3745 100 Plus
ND-75-PA 731 CG2286-PA 1..731 1..731 3745 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14709-PA 732 GI14709-PA 1..732 1..731 3472 88.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14171-PA 670 GL14171-PA 1..670 1..731 3124 82.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15341-PA 803 GA15341-PA 69..803 1..731 3560 91 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11194-PA 731 GM11194-PA 1..731 1..731 3873 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16774-PA 716 GJ16774-PA 8..716 1..731 3309 84.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10239-PA 738 GK10239-PA 1..738 1..731 3540 90 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ND75-PA 731 GE17466-PA 1..731 1..731 3859 99 Plus