Clone RE66795 Report

Search the DGRC for RE66795

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:667
Well:95
Vector:pFlc-1
Associated Gene/TranscriptSer6-RA
Protein status:RE66795.pep: gold
Preliminary Size:817
Sequenced Size:913

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2071 2002-01-01 Sim4 clustering to Release 2
CG2071 2002-02-27 Blastp of sequenced clone
CG2071 2003-01-01 Sim4 clustering to Release 3
Ser6 2008-04-29 Release 5.5 accounting
Ser6 2008-08-15 Release 5.9 accounting
Ser6 2008-12-18 5.12 accounting

Clone Sequence Records

RE66795.complete Sequence

913 bp (913 high quality bases) assembled on 2002-02-27

GenBank Submission: AY089642

> RE66795.complete
GGCCCATTTGGAAAAATGACATTCGGCAAAGTAGCGATTTTGCTCTGCAG
CTTTCTGCTGTTCTTGGTGCTGCCCGTACAGTCGGCGCCTGGTAAACTGA
ACGGTCGAGTGGTGGGCGGTGAGGATGCGGTGAAAAATCAGTTTCCCCAC
CAGGTCTCCCTGAGGAACGCCGGTTCCCACAGCTGTGGAGGTTCAATTCT
GACCAGAACCTACATCTTAACCGCCGCCCATTGTGTCTCCAACGAGGACG
TGAATCATGTGATTACGCCAATCGCTGCGGAGCGTTTCACCATTCGAGCG
GGCTCAAACGATCGATTCAGCGGTGGAGTCCTTGTCCAGGTGGCCGAGGT
AATTGTCCACGAGGAGTATGGTAACTTCCTTAACGACGTTGCTCTGCTGC
GACTAGAGAGCCCACTGATTCTGTCCGCGAGCATTCAGCCCATCGATCTA
CCCACTGTGGATACGCCAGCGGATGTAGATGTCGTAATTTCCGGATGGGG
AAGGATCAAACACCAGGGAGACTTGCCACGCTATCTGCAGTACAACACCC
TAAAGTCGATAACCAGGCAGCAGTGTGAGGAGCTGATCGATTTCGGATTT
GAGGGCGAGCTGTGCCTGCTCCACCAGGTGGACAATGGTGCTTGCAATGG
CGATTCCGGTGGCCCGGCCGTATATAACAACCAACTGGTGGGCGTGGCCG
GATTCGTCGTGGACGGATGTGGGTCCACCTACCCGGACGGATATGCCAGG
GTCTTTTACTTTAAGGACTGGATCAAAAAGCACTCTGATGTCTAAGAATG
TCAAGCACGCAAATGAATTTAACCTAGAATATAAACCAATTTTTTTTGTA
TAAATTTAAAAATGTATAAATAAAAAATTGTTTTATTTATGATAAAGGAA
AAAAAAAAAAAAA

RE66795.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-RA 899 Ser6-RA 1..899 2..900 4495 100 Plus
CG1304-RA 896 CG1304-RA 266..705 268..707 1525 89.7 Plus
CG1304-RA 896 CG1304-RA 1..247 2..249 705 86.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20827789..20828686 898..2 4305 98.9 Minus
chrX 22417052 chrX 20829852..20830572 752..33 2085 86.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20962603..20963501 900..2 4495 100 Minus
X 23542271 X 20964667..20965386 752..33 2100 86.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 20947695..20948593 900..2 4495 100 Minus
X 23527363 X 20949804..20950243 707..268 1525 89.7 Minus
X 23527363 X 20950262..20950508 249..2 705 86.2 Minus
Blast to na_te.dros performed on 2019-03-16 12:51:51 has no hits.

RE66795.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:53:16 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20827848..20828686 1..839 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:17 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..780 16..795 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:55 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..780 16..795 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:11:26 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..780 16..795 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:58 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..780 16..795 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:58 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..780 16..795 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:53 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..897 2..898 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:55 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..897 2..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:11:26 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 4..901 1..898 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:59 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 1..897 2..898 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:58 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
Ser6-RA 4..901 1..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:16 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
X 20962605..20963501 1..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:16 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
X 20962605..20963501 1..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:16 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
X 20962605..20963501 1..898 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:11:26 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20833632..20834528 1..898 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:46 Download gff for RE66795.complete
Subject Subject Range Query Range Percent Splice Strand
X 20947697..20948593 1..898 99   Minus

RE66795.hyp Sequence

Translation from 3 to 794

> RE66795.hyp
PFGKMTFGKVAILLCSFLLFLVLPVQSAPGKLNGRVVGGEDAVKNQFPHQ
VSLRNAGSHSCGGSILTRTYILTAAHCVSNEDVNHVITPIAAERFTIRAG
SNDRFSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLP
TVDTPADVDVVISGWGRIKHQGDLPRYLQYNTLKSITRQQCEELIDFGFE
GELCLLHQVDNGACNGDSGGPAVYNNQLVGVAGFVVDGCGSTYPDGYARV
FYFKDWIKKHSDV*

RE66795.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-PA 259 CG2071-PA 1..259 5..263 1361 100 Plus
CG1304-PA 260 CG1304-PA 5..259 9..263 1127 82.7 Plus
CG9676-PA 251 CG9676-PA 27..251 35..263 508 46.1 Plus
CG32523-PA 262 CG32523-PA 11..256 12..257 452 42.2 Plus
CG4653-PA 254 CG4653-PA 37..253 48..261 422 41.2 Plus

RE66795.pep Sequence

Translation from 15 to 794

> RE66795.pep
MTFGKVAILLCSFLLFLVLPVQSAPGKLNGRVVGGEDAVKNQFPHQVSLR
NAGSHSCGGSILTRTYILTAAHCVSNEDVNHVITPIAAERFTIRAGSNDR
FSGGVLVQVAEVIVHEEYGNFLNDVALLRLESPLILSASIQPIDLPTVDT
PADVDVVISGWGRIKHQGDLPRYLQYNTLKSITRQQCEELIDFGFEGELC
LLHQVDNGACNGDSGGPAVYNNQLVGVAGFVVDGCGSTYPDGYARVFYFK
DWIKKHSDV*

RE66795.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21864-PA 264 GF21864-PA 11..264 11..259 903 66.1 Plus
Dana\GF21865-PA 229 GF21865-PA 3..226 2..259 709 51.6 Plus
Dana\GF22295-PA 255 GF22295-PA 1..253 6..257 532 45.6 Plus
Dana\GF22292-PA 271 GF22292-PA 15..268 9..257 433 36 Plus
Dana\GF22653-PA 252 GF22653-PA 32..251 43..257 408 38.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17566-PA 259 GG17566-PA 1..259 1..259 1204 89.2 Plus
Dere\GG17565-PA 260 GG17565-PA 20..259 20..259 1074 81.2 Plus
Dere\GG18232-PA 251 GG18232-PA 27..251 31..259 522 46.5 Plus
Dere\GG19714-PA 261 GG19714-PA 35..255 31..253 426 44.2 Plus
Dere\GG19067-PA 255 GG19067-PA 38..254 44..257 409 39.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24521-PA 256 GH24521-PA 12..256 14..259 810 58.5 Plus
Dgri\GH12387-PA 238 GH12387-PA 7..228 13..252 532 46.7 Plus
Dgri\GH12394-PA 251 GH12394-PA 8..247 13..253 476 38.9 Plus
Dgri\GH12388-PA 269 GH12388-PA 39..265 31..259 475 44.4 Plus
Dgri\GH12384-PA 235 GH12384-PA 7..235 29..258 373 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ser6-PA 259 CG2071-PA 1..259 1..259 1361 100 Plus
CG1304-PA 260 CG1304-PA 5..259 5..259 1127 82.7 Plus
CG9676-PA 251 CG9676-PA 27..251 31..259 508 46.1 Plus
CG32523-PA 262 CG32523-PA 11..256 8..253 452 42.2 Plus
CG4653-PA 254 CG4653-PA 37..253 44..257 422 41.2 Plus
CG9673-PB 261 CG9673-PB 5..260 5..257 411 34.1 Plus
CG9673-PA 261 CG9673-PA 5..260 5..257 411 34.1 Plus
sphe-PA 249 CG9675-PA 24..246 30..255 386 38 Plus
Ser8-PA 260 CG4812-PA 1..253 6..253 367 34.5 Plus
alphaTry-PA 256 CG18444-PA 3..249 5..253 357 35.4 Plus
CG17234-PA 251 CG17234-PA 5..243 12..253 343 38.6 Plus
CG31269-PB 273 CG31269-PB 37..256 31..254 343 33.9 Plus
CG9672-PA 253 CG9672-PA 23..249 30..255 341 34.5 Plus
CG5255-PA 273 CG5255-PA 5..252 14..256 340 32.6 Plus
gammaTry-PA 253 CG30028-PA 26..249 27..253 337 34.3 Plus
CG30025-PA 253 CG30025-PA 26..249 27..253 337 34.3 Plus
deltaTry-PA 253 CG12351-PA 26..249 27..253 337 34.3 Plus
CG30031-PA 253 CG30031-PA 26..249 27..253 337 34.3 Plus
Send1-PA 255 CG17012-PA 9..245 8..259 327 37.1 Plus
lambdaTry-PA 272 CG12350-PA 31..256 27..253 327 34.9 Plus
CG31265-PA 266 CG31265-PA 30..255 25..254 326 35.6 Plus
betaTry-PB 253 CG18211-PB 26..249 27..253 325 33.3 Plus
betaTry-PA 253 CG18211-PA 26..249 27..253 325 33.3 Plus
CG4053-PB 265 CG4053-PB 31..255 28..255 325 33.6 Plus
epsilonTry-PA 256 CG18681-PA 26..254 27..258 324 35 Plus
CG16749-PA 265 CG16749-PA 28..259 30..255 323 34.3 Plus
iotaTry-PA 252 CG7754-PA 10..247 14..255 320 33.7 Plus
etaTry-PA 262 CG12386-PA 4..256 8..255 320 34.2 Plus
CG3355-PA 314 CG3355-PA 75..306 31..257 318 37.2 Plus
CG17477-PA 267 CG17477-PA 27..249 32..255 316 31.8 Plus
CG17239-PB 248 CG17239-PB 7..237 13..253 314 31.4 Plus
CG17239-PA 248 CG17239-PA 7..237 13..253 314 31.4 Plus
CG10477-PB 272 CG10477-PB 31..270 23..259 313 35.3 Plus
CG10477-PA 272 CG10477-PA 31..270 23..259 313 35.3 Plus
CG12256-PA 283 CG12256-PA 46..280 31..255 310 34.4 Plus
Send2-PA 239 CG18125-PA 5..225 12..253 306 35.2 Plus
CG4271-PA 242 CG4271-PA 9..236 17..258 305 33.9 Plus
CG17571-PB 258 CG17571-PB 29..256 30..258 305 35.1 Plus
CG17571-PA 258 CG17571-PA 29..256 30..258 305 35.1 Plus
CG12951-PA 265 CG12951-PA 8..260 12..256 305 32.6 Plus
CG17475-PB 288 CG17475-PB 49..268 31..254 296 30.4 Plus
CG17475-PA 288 CG17475-PA 49..268 31..254 296 30.4 Plus
CG34458-PA 257 CG34458-PA 31..257 31..259 295 33.5 Plus
yip7-PA 270 CG6457-PA 36..270 28..259 289 34.8 Plus
CG5246-PA 272 CG5246-PA 41..263 31..255 287 33.2 Plus
CG31954-PA 277 CG31954-PA 46..277 27..259 286 32.7 Plus
CG10472-PA 290 CG10472-PA 44..285 29..259 284 31.6 Plus
Jon65Aiii-PA 274 CG6483-PA 36..272 28..259 282 32.1 Plus
CG11192-PB 279 CG11192-PB 9..264 13..258 282 29.2 Plus
Jon44E-PB 271 CG8579-PB 26..269 19..259 281 30.5 Plus
Jon44E-PA 271 CG8579-PA 26..269 19..259 281 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15881-PA 254 GI15881-PA 3..254 5..259 781 57.3 Plus
Dmoj\GI15500-PA 257 GI15500-PA 26..256 29..259 749 63.6 Plus
Dmoj\GI14724-PA 252 GI14724-PA 25..251 29..256 505 42.4 Plus
Dmoj\GI15882-PA 268 GI15882-PA 42..268 31..259 455 46.4 Plus
Dmoj\GI15878-PA 251 GI15878-PA 5..251 11..258 405 36.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26774-PA 255 GL26774-PA 31..255 31..259 540 48.7 Plus
Dper\GL26772-PA 261 GL26772-PA 20..260 21..257 450 36.5 Plus
Dper\GL26771-PA 253 GL26771-PA 22..251 29..256 371 36.1 Plus
Dper\GL27271-PA 271 GL27271-PA 10..254 6..254 340 33.3 Plus
Dper\GL17143-PA 256 GL17143-PA 26..249 27..253 337 35.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11993-PA 220 GA11993-PA 12..220 6..259 776 60.8 Plus
Dpse\GA21958-PA 255 GA21958-PA 31..255 31..259 535 48.3 Plus
Dpse\GA21955-PA 261 GA21955-PA 20..260 21..257 445 36.1 Plus
Dpse\GA18331-PA 249 GA18331-PA 31..248 44..257 415 40.7 Plus
Dpse\GA21954-PA 253 GA21954-PA 22..251 29..256 374 36.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22650-PA 259 GM22650-PA 1..259 1..259 1245 94.2 Plus
Dsec\GM22649-PA 260 GM22649-PA 5..259 5..259 1040 82.4 Plus
Dsec\GM13375-PA 251 GM13375-PA 27..251 31..259 512 46.5 Plus
Dsec\GM13457-PA 254 GM13457-PA 37..253 44..257 426 40.9 Plus
Dsec\GM13373-PA 261 GM13373-PA 21..260 24..257 389 33.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15519-PA 259 GD15519-PA 1..259 1..259 1330 96.5 Plus
Dsim\GD15518-PA 260 GD15518-PA 5..259 5..259 1040 82.4 Plus
Dsim\GD15730-PA 251 GD15730-PA 27..251 31..259 527 47.4 Plus
Dsim\GD17298-PA 254 GD17298-PA 37..253 44..257 426 40.5 Plus
Dsim\GD15728-PA 261 GD15728-PA 20..260 23..257 403 35.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18895-PA 256 GJ18895-PA 2..255 6..259 871 61.4 Plus
Dvir\GJ19257-PA 272 GJ19257-PA 43..271 31..259 786 67.2 Plus
Dvir\GJ18708-PA 253 GJ18708-PA 3..251 5..257 770 57.7 Plus
Dvir\GJ18709-PA 265 GJ18709-PA 34..260 31..259 490 46.4 Plus
Dvir\GJ19438-PA 252 GJ19438-PA 9..251 14..256 476 40.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20044-PA 258 GK20044-PA 24..258 23..259 800 67.9 Plus
Dwil\GK25506-PA 256 GK25506-PA 24..256 27..259 753 59.2 Plus
Dwil\GK25410-PA 246 GK25410-PA 18..246 31..258 414 37.5 Plus
Dwil\GK19007-PA 261 GK19007-PA 11..254 8..253 404 39.4 Plus
Dwil\GK25503-PA 252 GK25503-PA 6..250 14..256 395 34.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15326-PA 259 GE15326-PA 1..259 1..259 1320 95.4 Plus
Dyak\GE15325-PA 260 GE15325-PA 5..259 5..259 1085 81.2 Plus
Dyak\GE15651-PA 253 GE15651-PA 29..253 31..259 503 45.7 Plus
Dyak\GE17612-PA 255 GE17612-PA 38..254 44..257 428 40.5 Plus
Dyak\GE17914-PA 261 GE17914-PA 35..259 31..257 413 43 Plus