Clone RE66826 Report

Search the DGRC for RE66826

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:668
Well:26
Vector:pFlc-1
Associated Gene/TranscriptZip102B-RE
Protein status:RE66826.pep: gold
Preliminary Size:891
Sequenced Size:2836

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2177 2002-01-01 Sim4 clustering to Release 2
CG2177 2003-01-01 Sim4 clustering to Release 3
CG2177 2005-01-26 Blastp of sequenced clone
CG2177 2008-04-29 Release 5.5 accounting
CG2177 2008-08-15 Release 5.9 accounting
CG2177 2008-12-18 5.12 accounting

Clone Sequence Records

RE66826.complete Sequence

2836 bp (2836 high quality bases) assembled on 2006-06-05

GenBank Submission: BT021244

> RE66826.complete
TCGGAGTTGGCAAAAACATGTAGCTTTGATGGTATTATGCTCATTAAAAT
TAAGTTGGGCAATCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTG
TTGGTTATGCTTGTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGAT
GAAATTAAGCGAGGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGAT
TGTTAGTGGGAACTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCA
TTGTATGTGGGGAGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCA
ACCAGATTACTCACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCT
TCATGATGTTGGTGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAAT
AAAAAAAACAATGCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGC
TGATGGAGTTGCATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTG
AGATAATTGTATTTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTT
GGATTAGTGACATTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCG
CAGACACCTAGTCTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAA
CGTATTTTGGGATCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAAT
GCCACTGGTATAGCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGC
AACTGTGCATGTTTTACCAGAGCTTACCCAAGGGGGATTTACGAAAAGCG
ATCAGCATGATTATTGTTTGCTAGAGGAATCTCGAGGTGTTGCTACGAAT
GATATAAATGGAAGCAATAGTATTCAAGCACTAAAATATAGTGAATTGGT
AATTCTGATTTGCGGCGCACTGCTACCCCTAATTATAACATTTGGACATA
ATCACTAGTAATGTAGTAATACATATATTTTTGTCAAATAAGATGAAGTA
AAAGTTAAGGGATATTAAGCTATAAATATATTGGGTTTAATTTCTCGGAT
ATACAATTATTAACATTAAGTGCTTTGCACAAAGATTTTGAATTTAATGA
ATTGTCGCATGAAAGTCAAATTTGGTACCGACGTCAACTTTTGTCAGCTT
TCTGTAAAGTTGAGTGATTTGAGAGGCCTTATACGAGAATGTATTGTGAG
TAAACCAAGCAAAATGAGGAAGGTCAAAAAGTAGTGCAAGAAATATTTTA
CTTTAATATTTAGACTTGCGCAGGCAGGAATAGTACGCAAGTCGGCGCCG
AATTCATTGGCATCAGAATTTTGACTCCGGCTCCTATATACTATATGTTA
ATTTATAATTATATATGTTTTTATTGTATTTAATAACAATGGATAGTTTA
CGTTCTCAGAATGGTAGTAAAAAGTAAGAGACGGTTTAAAGGCAGCTTGG
CAATGTCACCATTGGTTTACTGGATAACGTCTTCTGTTACGGCCTTAGAT
TACGGATTTCTATAACTACTTCTGCTATGACTTTCTACATTTATAGATAC
CTTTCTGCGTCTTTTCTACTTTAATTCTGCTCAACTTCTTTGCGGAATAT
TTTTCGCGCGTTCTTTATTTCCGCTGTTCTTGTCTTGTCTTGTAAATATG
AATCATATCTTAGCAAAGATCTTTAAAAACTTCTTTGGCTATAAATGATG
TGTATTATGGGCACTTCTCTTCTACTAGAACGTGAAAAAAACTGTTTCCC
AAAATCACGACGACAAATAGCTTTGCTGACTGCAGTTTTAGGCAGTTTTT
TAAACCATGGCGTTAAGTTGATCCATCTTTGTTTTTGACTATGACGAGTC
TGCTGGCGAAATTCGGCGCCGACTTGCGTACTATTCCTTTTCGTTGCCAT
TCCGAAACCTGATCTCGATTCTCTTCTCCTTGGGCACAATCGACAAAATT
TGGTAAAATGTTCAATTACTTGTAGCATGGATTTGTTTCAAATTAGGATA
AATTGTTTTCCCTTTACATATATACAATCTTATAATATTTTGTATCTTTT
CACCGCGTAGCATCTTACTAATACTTCCAAAATCACTAGGTTGCGTCATA
TCGATATGAGAAAGTGTACATCAATCCGGTAGTTTGTGTGTAAACACCAC
TCTATCGTTCTAACTTTTTGATTTGTCGTTAGATAAGCTGTGAAGCTTGT
CTTTCGTCGTTGCCAGACCATTTCCACATAAATGTGTATGTTTTCACTTT
ATATGTATGTCACTGTGGTCGGCAGTCCTATTCGTGTCAATGGTCACCAA
AGAGTTTCTATACTACAATTTTGAGCTTAAAGATTTGTCATTAACACAGT
CAAACCAAAGACACTAGAATAACGTTATTTGTGGTCCGGTGGGTATGCCC
ATGTTTATAAAGTTAATTCGACCCAGTCTAAAGTTCTGGAACGTGTCAAG
GAAAGAAGTATTAACGAGTGCTTCTCTTTCCACTTACCTGCGTTCTACCA
AATCTACCAATAATTCTTGTGTCTTTGAATCTACATTGAGTCAGGAAAGA
TTTATAATTGTAGCAACATTATAGAGGGGACCATAGCCATACATGAAACT
ATTAGAGATTTATTAATATTAAAGTGTAGAATTCTTTGCATTAATAATGC
ATATTACAATGTTCGAGTTTTATATTTGTCGTATTAATTGGCAAGCAGAA
AAGTATCATAAGTCCAAATGTTCTACAGTTTTGTATATTTGTAAATTAAT
GATAATCTAAGTACTGTAAAACTGGAGAACATTTATTCCTGTAAAAATAA
GCAATAAAAAATATTTATAAAGAAAAAAAAAAAAAA

RE66826.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2177-RA 3120 CG2177-RA 308..3120 4..2816 14065 100 Plus
CG2177-RC 3120 CG2177-RC 308..3120 4..2816 14065 100 Plus
CG2177-RB 3042 CG2177-RB 387..3042 161..2816 13280 100 Plus
CG2177-RB 3042 CG2177-RB 181..341 4..164 805 100 Plus
CG2177-RB 3042 CG2177-RB 1502..1530 1888..1860 145 100 Minus
CG2177-RB 3042 CG2177-RB 2086..2114 1304..1276 145 100 Minus
CG2177-RA 3120 CG2177-RA 1580..1608 1888..1860 145 100 Minus
CG2177-RA 3120 CG2177-RA 2164..2192 1304..1276 145 100 Minus
CG2177-RC 3120 CG2177-RC 1580..1608 1888..1860 145 100 Minus
CG2177-RC 3120 CG2177-RC 2164..2192 1304..1276 145 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 331492..333866 2821..446 11830 100 Minus
chr4 1351717 chr4 333921..334208 449..162 1440 100 Minus
chr4 1351717 chr4 334311..334471 164..4 805 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 310927..313302 2821..446 11880 100 Minus
4 1348131 4 313357..313644 449..162 1440 100 Minus
4 1348131 4 313747..313907 164..4 805 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 310927..313302 2821..446 11880 100 Minus
4 1331231 4 313357..313644 449..162 1440 100 Minus
4 1331231 4 313747..313907 164..4 805 100 Minus
4 1331231 4 311860..311888 1276..1304 145 100 Plus
4 1331231 4 312444..312472 1860..1888 145 100 Plus
Blast to na_te.dros performed 2019-03-16 08:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 521..668 2372..2220 133 59.2 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6824..6916 1060..968 123 59.1 Minus

RE66826.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:27:27 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 331513..333862 450..2800 98 <- Minus
chr4 333921..334206 164..449 100 <- Minus
chr4 334312..334472 1..163 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:32:19 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RA 1..930 29..958 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:23:20 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RA 1..930 29..958 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:54:46 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RE 1..894 65..958 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:42:01 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RA 1..930 29..958 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:40:47 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
Zip102B-RE 1..894 65..958 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:51:35 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RA 2..2814 4..2816 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:23:20 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RA 2..2814 4..2816 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:46 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RE 5..2821 1..2818 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:42:01 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
CG2177-RA 2..2814 4..2816 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:40:47 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
Zip102B-RE 5..2821 1..2818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:27 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
4 313748..313908 1..163 98   Minus
4 310926..313298 450..2822 99 <- Minus
4 313357..313642 164..449 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:27 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
4 313748..313908 1..163 98   Minus
4 310926..313298 450..2822 99 <- Minus
4 313357..313642 164..449 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:27:27 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
4 313748..313908 1..163 98   Minus
4 310926..313298 450..2822 99 <- Minus
4 313357..313642 164..449 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:46 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 331552..333924 450..2822 99 <- Minus
arm_4 333983..334268 164..449 100 <- Minus
arm_4 334374..334534 1..163 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:19 Download gff for RE66826.complete
Subject Subject Range Query Range Percent Splice Strand
4 310926..313298 450..2822 99 <- Minus
4 313357..313642 164..449 100 <- Minus
4 313748..313908 1..163 98   Minus

RE66826.hyp Sequence

Translation from 4 to 957

> RE66826.hyp
SWQKHVALMVLCSLKLSWAIMAEETIILILLVLVMLVGSYLAGSIPMLMK
LSEEKLKCVTVLGAGLLVGTALVVIIPEGIRSLYVGSGQSQKRTSVPEQP
DYSQTIGLSLVLGFVFMMLVDISQRKSNVGSNKKNNATLTLGLVVHAAAD
GVALGAAATTSHQDVEIIVFLAIMLHKAPAAFGLVTFLLHEKVDRHQIRR
HLVLFSLSAPLMTILTYFGIGQEQKDTLNSVNATGIAMLFSAGTFLYVAT
VHVLPELTQGGFTKSDQHDYCLLEESRGVATNDINGSNSIQALKYSELVI
LICGALLPLIITFGHNH*

RE66826.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Zip102B-PF 297 CG2177-PF 1..297 21..317 1471 100 Plus
Zip102B-PE 297 CG2177-PE 1..297 21..317 1471 100 Plus
Zip102B-PD 201 CG2177-PD 1..201 117..317 1010 100 Plus
Zip102B-PB 201 CG2177-PB 1..201 117..317 1010 100 Plus

RE66826.pep Sequence

Translation from 28 to 957

> RE66826.pep
MVLCSLKLSWAIMAEETIILILLVLVMLVGSYLAGSIPMLMKLSEEKLKC
VTVLGAGLLVGTALVVIIPEGIRSLYVGSGQSQKRTSVPEQPDYSQTIGL
SLVLGFVFMMLVDISQRKSNVGSNKKNNATLTLGLVVHAAADGVALGAAA
TTSHQDVEIIVFLAIMLHKAPAAFGLVTFLLHEKVDRHQIRRHLVLFSLS
APLMTILTYFGIGQEQKDTLNSVNATGIAMLFSAGTFLYVATVHVLPELT
QGGFTKSDQHDYCLLEESRGVATNDINGSNSIQALKYSELVILICGALLP
LIITFGHNH*

RE66826.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23384-PA 294 GF23384-PA 1..294 13..309 1251 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16452-PA 308 GG16452-PA 1..308 1..309 1433 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23613-PA 323 GH23613-PA 1..323 13..309 1105 70.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Zip102B-PF 297 CG2177-PF 1..297 13..309 1471 100 Plus
Zip102B-PE 297 CG2177-PE 1..297 13..309 1471 100 Plus
Zip102B-PD 201 CG2177-PD 1..201 109..309 1010 100 Plus
Zip102B-PB 201 CG2177-PB 1..201 109..309 1010 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14088-PA 301 GI14088-PA 1..301 13..309 1110 74.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18150-PA 310 GL18150-PA 1..310 13..309 1279 81.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22512-PA 310 GA22512-PA 1..310 13..309 1279 81.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26784-PA 310 GM26784-PA 1..309 1..309 1588 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24385-PA 310 GD24385-PA 1..309 1..309 1588 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16326-PA 315 GJ16326-PA 2..315 15..309 1137 73.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13580-PA 321 GK13580-PA 1..321 13..309 1156 73.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14518-PA 308 GE14518-PA 1..308 1..309 1397 90.9 Plus