BDGP Sequence Production Resources |
Search the DGRC for RE66826
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 668 |
Well: | 26 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Zip102B-RE |
Protein status: | RE66826.pep: gold |
Preliminary Size: | 891 |
Sequenced Size: | 2836 |
Gene | Date | Evidence |
---|---|---|
CG2177 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2177 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2177 | 2005-01-26 | Blastp of sequenced clone |
CG2177 | 2008-04-29 | Release 5.5 accounting |
CG2177 | 2008-08-15 | Release 5.9 accounting |
CG2177 | 2008-12-18 | 5.12 accounting |
2836 bp (2836 high quality bases) assembled on 2006-06-05
GenBank Submission: BT021244
> RE66826.complete TCGGAGTTGGCAAAAACATGTAGCTTTGATGGTATTATGCTCATTAAAAT TAAGTTGGGCAATCATGGCTGAGGAGACAATAATTCTCATTTTATTAGTG TTGGTTATGCTTGTGGGGTCTTATTTGGCAGGGAGCATACCGATGCTGAT GAAATTAAGCGAGGAAAAGCTAAAATGTGTCACTGTGCTGGGAGCTGGAT TGTTAGTGGGAACTGCTCTCGTTGTTATTATTCCGGAGGGCATTCGATCA TTGTATGTGGGGAGTGGCCAATCCCAAAAACGGACATCAGTTCCGGAGCA ACCAGATTACTCACAGACCATTGGACTTTCTCTTGTGCTTGGATTTGTCT TCATGATGTTGGTGGACATCTCTCAGCGGAAGAGTAATGTTGGAAGTAAT AAAAAAAACAATGCCACACTAACTCTTGGATTGGTTGTGCATGCCGCAGC TGATGGAGTTGCATTGGGAGCAGCTGCCACCACTAGCCATCAAGACGTTG AGATAATTGTATTTTTAGCTATAATGCTTCATAAGGCACCAGCAGCATTT GGATTAGTGACATTCTTACTGCACGAAAAAGTAGACAGACATCAAATTCG CAGACACCTAGTCTTATTTTCCCTGTCGGCTCCCCTTATGACTATTTTAA CGTATTTTGGGATCGGACAGGAGCAGAAGGACACGTTAAATTCCGTGAAT GCCACTGGTATAGCTATGCTATTCTCCGCTGGAACATTTTTGTACGTAGC AACTGTGCATGTTTTACCAGAGCTTACCCAAGGGGGATTTACGAAAAGCG ATCAGCATGATTATTGTTTGCTAGAGGAATCTCGAGGTGTTGCTACGAAT GATATAAATGGAAGCAATAGTATTCAAGCACTAAAATATAGTGAATTGGT AATTCTGATTTGCGGCGCACTGCTACCCCTAATTATAACATTTGGACATA ATCACTAGTAATGTAGTAATACATATATTTTTGTCAAATAAGATGAAGTA AAAGTTAAGGGATATTAAGCTATAAATATATTGGGTTTAATTTCTCGGAT ATACAATTATTAACATTAAGTGCTTTGCACAAAGATTTTGAATTTAATGA ATTGTCGCATGAAAGTCAAATTTGGTACCGACGTCAACTTTTGTCAGCTT TCTGTAAAGTTGAGTGATTTGAGAGGCCTTATACGAGAATGTATTGTGAG TAAACCAAGCAAAATGAGGAAGGTCAAAAAGTAGTGCAAGAAATATTTTA CTTTAATATTTAGACTTGCGCAGGCAGGAATAGTACGCAAGTCGGCGCCG AATTCATTGGCATCAGAATTTTGACTCCGGCTCCTATATACTATATGTTA ATTTATAATTATATATGTTTTTATTGTATTTAATAACAATGGATAGTTTA CGTTCTCAGAATGGTAGTAAAAAGTAAGAGACGGTTTAAAGGCAGCTTGG CAATGTCACCATTGGTTTACTGGATAACGTCTTCTGTTACGGCCTTAGAT TACGGATTTCTATAACTACTTCTGCTATGACTTTCTACATTTATAGATAC CTTTCTGCGTCTTTTCTACTTTAATTCTGCTCAACTTCTTTGCGGAATAT TTTTCGCGCGTTCTTTATTTCCGCTGTTCTTGTCTTGTCTTGTAAATATG AATCATATCTTAGCAAAGATCTTTAAAAACTTCTTTGGCTATAAATGATG TGTATTATGGGCACTTCTCTTCTACTAGAACGTGAAAAAAACTGTTTCCC AAAATCACGACGACAAATAGCTTTGCTGACTGCAGTTTTAGGCAGTTTTT TAAACCATGGCGTTAAGTTGATCCATCTTTGTTTTTGACTATGACGAGTC TGCTGGCGAAATTCGGCGCCGACTTGCGTACTATTCCTTTTCGTTGCCAT TCCGAAACCTGATCTCGATTCTCTTCTCCTTGGGCACAATCGACAAAATT TGGTAAAATGTTCAATTACTTGTAGCATGGATTTGTTTCAAATTAGGATA AATTGTTTTCCCTTTACATATATACAATCTTATAATATTTTGTATCTTTT CACCGCGTAGCATCTTACTAATACTTCCAAAATCACTAGGTTGCGTCATA TCGATATGAGAAAGTGTACATCAATCCGGTAGTTTGTGTGTAAACACCAC TCTATCGTTCTAACTTTTTGATTTGTCGTTAGATAAGCTGTGAAGCTTGT CTTTCGTCGTTGCCAGACCATTTCCACATAAATGTGTATGTTTTCACTTT ATATGTATGTCACTGTGGTCGGCAGTCCTATTCGTGTCAATGGTCACCAA AGAGTTTCTATACTACAATTTTGAGCTTAAAGATTTGTCATTAACACAGT CAAACCAAAGACACTAGAATAACGTTATTTGTGGTCCGGTGGGTATGCCC ATGTTTATAAAGTTAATTCGACCCAGTCTAAAGTTCTGGAACGTGTCAAG GAAAGAAGTATTAACGAGTGCTTCTCTTTCCACTTACCTGCGTTCTACCA AATCTACCAATAATTCTTGTGTCTTTGAATCTACATTGAGTCAGGAAAGA TTTATAATTGTAGCAACATTATAGAGGGGACCATAGCCATACATGAAACT ATTAGAGATTTATTAATATTAAAGTGTAGAATTCTTTGCATTAATAATGC ATATTACAATGTTCGAGTTTTATATTTGTCGTATTAATTGGCAAGCAGAA AAGTATCATAAGTCCAAATGTTCTACAGTTTTGTATATTTGTAAATTAAT GATAATCTAAGTACTGTAAAACTGGAGAACATTTATTCCTGTAAAAATAA GCAATAAAAAATATTTATAAAGAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2177-RA | 3120 | CG2177-RA | 308..3120 | 4..2816 | 14065 | 100 | Plus |
CG2177-RC | 3120 | CG2177-RC | 308..3120 | 4..2816 | 14065 | 100 | Plus |
CG2177-RB | 3042 | CG2177-RB | 387..3042 | 161..2816 | 13280 | 100 | Plus |
CG2177-RB | 3042 | CG2177-RB | 181..341 | 4..164 | 805 | 100 | Plus |
CG2177-RB | 3042 | CG2177-RB | 1502..1530 | 1888..1860 | 145 | 100 | Minus |
CG2177-RB | 3042 | CG2177-RB | 2086..2114 | 1304..1276 | 145 | 100 | Minus |
CG2177-RA | 3120 | CG2177-RA | 1580..1608 | 1888..1860 | 145 | 100 | Minus |
CG2177-RA | 3120 | CG2177-RA | 2164..2192 | 1304..1276 | 145 | 100 | Minus |
CG2177-RC | 3120 | CG2177-RC | 1580..1608 | 1888..1860 | 145 | 100 | Minus |
CG2177-RC | 3120 | CG2177-RC | 2164..2192 | 1304..1276 | 145 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr4 | 1351717 | chr4 | 331492..333866 | 2821..446 | 11830 | 100 | Minus |
chr4 | 1351717 | chr4 | 333921..334208 | 449..162 | 1440 | 100 | Minus |
chr4 | 1351717 | chr4 | 334311..334471 | 164..4 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
4 | 1331231 | 4 | 310927..313302 | 2821..446 | 11880 | 100 | Minus |
4 | 1331231 | 4 | 313357..313644 | 449..162 | 1440 | 100 | Minus |
4 | 1331231 | 4 | 313747..313907 | 164..4 | 805 | 100 | Minus |
4 | 1331231 | 4 | 311860..311888 | 1276..1304 | 145 | 100 | Plus |
4 | 1331231 | 4 | 312444..312472 | 1860..1888 | 145 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
1360 | 3409 | 1360 1360 3409bp | 521..668 | 2372..2220 | 133 | 59.2 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6824..6916 | 1060..968 | 123 | 59.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 331513..333862 | 450..2800 | 98 | <- | Minus |
chr4 | 333921..334206 | 164..449 | 100 | <- | Minus |
chr4 | 334312..334472 | 1..163 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RA | 1..930 | 29..958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RA | 1..930 | 29..958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RE | 1..894 | 65..958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RA | 1..930 | 29..958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Zip102B-RE | 1..894 | 65..958 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RA | 2..2814 | 4..2816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RA | 2..2814 | 4..2816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RE | 5..2821 | 1..2818 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2177-RA | 2..2814 | 4..2816 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Zip102B-RE | 5..2821 | 1..2818 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 313748..313908 | 1..163 | 98 | Minus | |
4 | 310926..313298 | 450..2822 | 99 | <- | Minus |
4 | 313357..313642 | 164..449 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 313748..313908 | 1..163 | 98 | Minus | |
4 | 310926..313298 | 450..2822 | 99 | <- | Minus |
4 | 313357..313642 | 164..449 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 313748..313908 | 1..163 | 98 | Minus | |
4 | 310926..313298 | 450..2822 | 99 | <- | Minus |
4 | 313357..313642 | 164..449 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 331552..333924 | 450..2822 | 99 | <- | Minus |
arm_4 | 333983..334268 | 164..449 | 100 | <- | Minus |
arm_4 | 334374..334534 | 1..163 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 310926..313298 | 450..2822 | 99 | <- | Minus |
4 | 313357..313642 | 164..449 | 100 | <- | Minus |
4 | 313748..313908 | 1..163 | 98 | Minus |
Translation from 4 to 957
> RE66826.hyp SWQKHVALMVLCSLKLSWAIMAEETIILILLVLVMLVGSYLAGSIPMLMK LSEEKLKCVTVLGAGLLVGTALVVIIPEGIRSLYVGSGQSQKRTSVPEQP DYSQTIGLSLVLGFVFMMLVDISQRKSNVGSNKKNNATLTLGLVVHAAAD GVALGAAATTSHQDVEIIVFLAIMLHKAPAAFGLVTFLLHEKVDRHQIRR HLVLFSLSAPLMTILTYFGIGQEQKDTLNSVNATGIAMLFSAGTFLYVAT VHVLPELTQGGFTKSDQHDYCLLEESRGVATNDINGSNSIQALKYSELVI LICGALLPLIITFGHNH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Zip102B-PF | 297 | CG2177-PF | 1..297 | 21..317 | 1471 | 100 | Plus |
Zip102B-PE | 297 | CG2177-PE | 1..297 | 21..317 | 1471 | 100 | Plus |
Zip102B-PD | 201 | CG2177-PD | 1..201 | 117..317 | 1010 | 100 | Plus |
Zip102B-PB | 201 | CG2177-PB | 1..201 | 117..317 | 1010 | 100 | Plus |
Translation from 28 to 957
> RE66826.pep MVLCSLKLSWAIMAEETIILILLVLVMLVGSYLAGSIPMLMKLSEEKLKC VTVLGAGLLVGTALVVIIPEGIRSLYVGSGQSQKRTSVPEQPDYSQTIGL SLVLGFVFMMLVDISQRKSNVGSNKKNNATLTLGLVVHAAADGVALGAAA TTSHQDVEIIVFLAIMLHKAPAAFGLVTFLLHEKVDRHQIRRHLVLFSLS APLMTILTYFGIGQEQKDTLNSVNATGIAMLFSAGTFLYVATVHVLPELT QGGFTKSDQHDYCLLEESRGVATNDINGSNSIQALKYSELVILICGALLP LIITFGHNH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23384-PA | 294 | GF23384-PA | 1..294 | 13..309 | 1251 | 81.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16452-PA | 308 | GG16452-PA | 1..308 | 1..309 | 1433 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23613-PA | 323 | GH23613-PA | 1..323 | 13..309 | 1105 | 70.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Zip102B-PF | 297 | CG2177-PF | 1..297 | 13..309 | 1471 | 100 | Plus |
Zip102B-PE | 297 | CG2177-PE | 1..297 | 13..309 | 1471 | 100 | Plus |
Zip102B-PD | 201 | CG2177-PD | 1..201 | 109..309 | 1010 | 100 | Plus |
Zip102B-PB | 201 | CG2177-PB | 1..201 | 109..309 | 1010 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14088-PA | 301 | GI14088-PA | 1..301 | 13..309 | 1110 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18150-PA | 310 | GL18150-PA | 1..310 | 13..309 | 1279 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22512-PA | 310 | GA22512-PA | 1..310 | 13..309 | 1279 | 81.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26784-PA | 310 | GM26784-PA | 1..309 | 1..309 | 1588 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24385-PA | 310 | GD24385-PA | 1..309 | 1..309 | 1588 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16326-PA | 315 | GJ16326-PA | 2..315 | 15..309 | 1137 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13580-PA | 321 | GK13580-PA | 1..321 | 13..309 | 1156 | 73.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14518-PA | 308 | GE14518-PA | 1..308 | 1..309 | 1397 | 90.9 | Plus |