![]() | BDGP Sequence Production Resources |
Search the DGRC for RE66837
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 668 |
Well: | 37 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pc-RA |
Protein status: | RE66837.pep: gold |
Preliminary Size: | 1794 |
Sequenced Size: | 2434 |
Gene | Date | Evidence |
---|---|---|
CG32443 | 2001-12-14 | Blastp of sequenced clone |
CG7618 | 2002-01-01 | Sim4 clustering to Release 2 |
CG32443 | 2003-01-01 | Sim4 clustering to Release 3 |
Pc | 2008-04-29 | Release 5.5 accounting |
Pc | 2008-08-15 | Release 5.9 accounting |
CG7632 | 2008-08-15 | Release 5.9 accounting |
Pc | 2008-12-18 | 5.12 accounting |
CG7632 | 2008-12-18 | 5.12 accounting |
2434 bp (2434 high quality bases) assembled on 2005-08-22
GenBank Submission: AY071619
> RE66837.complete TAAACCAGAAGTTAATTGCAAATAAAACGAATAATAAAACGTTCCGAGAA GATTATTAATTAAAAATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGTT GGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCTG AGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGTC AAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAAA CATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCCT CCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGAT CCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATGT GGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCGA AGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAAG TCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATCA TCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCCT CCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAGC AACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAGC CGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCCC CAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAGC CAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCGA GGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACAG AAGCCATAAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAAGAAGTA GCCAACGAGGAAGGCAACCAACAGGCGCCACAGGTTCCTTCCGAGAACAA TAACATACCAAAACCGTGCAACAACCTGGCTATCAACCAGAAACAGCCGC TTACTCCTCTTTCGCCGCGTGCCCTTCCGCCGCGCTTCTGGCTGCCGGCC AAATGCAACATATCCAACCGGGTGGTGATCACAGACGTCACCGTAAACCT GGAGACCGTTACCATACGCGAGTGCAAGACGGAGCGCGGGTTTTTTCGTG AGCGCGACATGAAAGGCGATTCGTCGCCAGTAGCTTGAGCTTCGACCCAA ACAAATGTCGGGAAAACAAACCGGAAAACTGATACAATTGTAAATAGACA AACCAAAATGCGAGAAAGTTGAGAGAAGAATTATGCAGAGAAATCCACAC TAAATGTTGCTAAGCATTTTCTCTTTAGGACTTAACTAATTTATTGTATT TATTTTTAGCGTAGGTTTTAGTTTGTTGTTTTATTACAATGTTTAATGTG CAAGAGTAGTTTAAGCAAGCGCAAGTCGGGTATTTACTAAATGACTTTAT ATATACATAAATTTTCGCTCATTTTTTTTATCAGCATTGCAATGATTGAA TATTTTCCTATTTAAATTAAAAATTTATTTTTCTGCAATATCACTTTTTA AGATTAATCTGGTTGTCATTTAGTGAATAGGCGAAATGCTGCGGCTGCTT AACTTGCCAATGCAATAGATTGTAAAACTTGCAGCGTAGATAAATATGTA TGTACATGTTACATATATTTACCACATATTGTATATTTTTTATAACACTT TGAATCTGATTGAAAACAACACAAGACACTCAAATGCTAAGAAAACTCCA TGCGAAACCGAAGCAATTGTTGATTACGCTTACAAATATATACAATAGAA GATGCATATATTCGAGTAGTCACCACCACGTTTGCCGAGTTGGCTATCCC AATGTTGTAATTGTTTAATATTATATTTCCTCGCGCCGACTGATTTTACA AAAGAAAACCCCAAAAACATATATACAATTGTAGATTTACAAATATTTTT AGACTTTAGCTAACCAAAATCTCTACGTAATATTTATTTTAACATGTTCT CTTAGCAGTCATTCAAGACTCAAGTGCTGCCTTTATGGGTTCAGAGCGGT GCAGTGCACAGATAATTCCAAATCGAGCCCATAGACTCATTACTTAAATC CTATGTCTATTTCACAATTTTTTTTCACGCTATGAAACAGAAAACTACGT GGGAGCTGCGGGGAATTTACAAACTCCTGCTTATTTCCCATGGGTCCTGT GCGTATGTTTCTATTTGTCTTAGCTCTTTATTGGCTAGTTTTAGTTACGG CGTAAATTCCACACAAAACAGCAATTCAAAGCGTATATTTTAAGCTTTTT AATATAGTGTTTAACATTAATGTTATTGCCGGTATTGATTGTACATAATA AATTAAATAGAAGCAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 21304312..21306492 | 2358..178 | 10905 | 100 | Minus |
chr3L | 24539361 | chr3L | 21306804..21306983 | 180..1 | 900 | 100 | Minus |
chr3L | 24539361 | chr3L | 21295146..21295210 | 2418..2354 | 325 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 21315304..21317484 | 2358..178 | 10905 | 100 | Minus |
3L | 28110227 | 3L | 21317796..21317975 | 180..1 | 900 | 100 | Minus |
3L | 28110227 | 3L | 21306136..21306202 | 2420..2354 | 335 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 21308404..21310584 | 2358..178 | 10905 | 100 | Minus |
3L | 28103327 | 3L | 21310896..21311075 | 180..1 | 900 | 100 | Minus |
3L | 28103327 | 3L | 21299236..21299302 | 2420..2354 | 335 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1436..1519 | 1629..1546 | 140 | 65.9 | Minus |
accord2 | 7650 | accord2 QBERT 7650bp | 5764..5827 | 1703..1768 | 118 | 66.7 | Plus |
1360 | 3409 | 1360 1360 3409bp | 3003..3081 | 1511..1593 | 117 | 63.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 21304314..21306490 | 180..2356 | 97 | <- | Minus |
chr3L | 21295146..21295206 | 2357..2418 | 98 | <- | Minus |
chr3L | 21306805..21306983 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 1..1173 | 66..1238 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 1..1173 | 66..1238 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 1..1173 | 66..1238 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 1..1173 | 66..1238 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 1..1173 | 66..1238 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 2..2418 | 1..2418 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 2..2418 | 1..2418 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 46..2462 | 1..2418 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 2..2418 | 1..2418 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pc-RA | 46..2462 | 1..2418 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21306138..21306198 | 2357..2418 | 98 | <- | Minus |
3L | 21315306..21317482 | 180..2356 | 100 | <- | Minus |
3L | 21317797..21317975 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21306138..21306198 | 2357..2418 | 98 | <- | Minus |
3L | 21315306..21317482 | 180..2356 | 100 | <- | Minus |
3L | 21317797..21317975 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21306138..21306198 | 2357..2418 | 98 | <- | Minus |
3L | 21315306..21317482 | 180..2356 | 100 | <- | Minus |
3L | 21317797..21317975 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 21299238..21299298 | 2357..2418 | 98 | <- | Minus |
arm_3L | 21308406..21310582 | 180..2356 | 100 | <- | Minus |
arm_3L | 21310897..21311075 | 1..179 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21308406..21310582 | 180..2356 | 100 | <- | Minus |
3L | 21310897..21311075 | 1..179 | 100 | Minus | |
3L | 21299238..21299298 | 2357..2418 | 98 | <- | Minus |
Translation from 65 to 1237
> RE66837.pep MTGRGKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGW NQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPES EEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNS GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSS EDQPLIGTKRKAEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPF QDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEG NQQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNIS NRVVITDVTVNLETVTIRECKTERGFFRERDMKGDSSPVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24200-PA | 397 | GF24200-PA | 15..397 | 15..390 | 1180 | 78.1 | Plus |
Dana\GF20154-PA | 251 | GF20154-PA | 1..251 | 1..309 | 584 | 57.1 | Plus |
Dana\GF13165-PA | 116 | GF13165-PA | 13..104 | 99..192 | 176 | 63.8 | Plus |
Dana\GF15276-PA | 210 | GF15276-PA | 23..70 | 26..73 | 151 | 56.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13243-PA | 389 | GG13243-PA | 1..389 | 1..390 | 1988 | 96.4 | Plus |
Dere\GG23468-PA | 205 | GG23468-PA | 23..74 | 26..77 | 152 | 55.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16158-PA | 392 | GH16158-PA | 6..392 | 23..390 | 995 | 65.5 | Plus |
Dgri\GH10251-PA | 203 | GH10251-PA | 24..83 | 26..85 | 152 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pc-PA | 390 | CG32443-PA | 1..390 | 1..390 | 2075 | 100 | Plus |
Su(var)205-PB | 206 | CG8409-PB | 24..115 | 26..131 | 159 | 34.9 | Plus |
Su(var)205-PA | 206 | CG8409-PA | 24..115 | 26..131 | 159 | 34.9 | Plus |
dikar-PG | 3080 | CG42799-PG | 401..625 | 88..315 | 156 | 23.2 | Plus |
dikar-PC | 3080 | CG42799-PC | 401..625 | 88..315 | 156 | 23.2 | Plus |
dikar-PD | 3222 | CG42799-PD | 401..625 | 88..315 | 156 | 23.2 | Plus |
dikar-PF | 3261 | CG42799-PF | 401..625 | 88..315 | 156 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13310-PA | 368 | GI13310-PA | 6..368 | 23..390 | 1099 | 72.3 | Plus |
Dmoj\GI15430-PA | 226 | GI15430-PA | 25..76 | 26..77 | 145 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24588-PA | 373 | GL24588-PA | 1..373 | 1..390 | 1129 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16908-PA | 373 | GA16908-PA | 1..373 | 1..390 | 1129 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22147-PA | 366 | GM22147-PA | 1..366 | 1..390 | 1374 | 87.7 | Plus |
Dsec\GM13138-PA | 206 | GM13138-PA | 24..75 | 26..77 | 150 | 55.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12124-PA | 390 | GD12124-PA | 1..390 | 1..390 | 2034 | 97.9 | Plus |
Dsim\GD22433-PA | 206 | GD22433-PA | 24..75 | 26..77 | 148 | 55.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12080-PA | 364 | GJ12080-PA | 6..364 | 23..390 | 1012 | 72.8 | Plus |
Dvir\Su(var)205-PA | 213 | GJ17281-PA | 24..75 | 26..77 | 148 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20423-PA | 408 | GK20423-PA | 1..408 | 1..390 | 1013 | 65 | Plus |
Dwil\GK14980-PA | 205 | GK14980-PA | 21..72 | 26..77 | 159 | 53.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22965-PA | 389 | GE22965-PA | 1..389 | 1..390 | 1986 | 96.4 | Plus |
Dyak\GE22343-PA | 221 | GE22343-PA | 1..207 | 1..208 | 1055 | 96.2 | Plus |
Dyak\Su(var)205-PA | 205 | GE11133-PA | 23..74 | 26..77 | 149 | 55.8 | Plus |
Translation from 65 to 1237
> RE66837.hyp MTGRGKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGW NQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPES EEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNS GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSS EDQPLIGTKRKAEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPF QDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEG NQQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNIS NRVVITDVTVNLETVTIRECKTERGFFRERDMKGDSSPVA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pc-PA | 390 | CG32443-PA | 1..390 | 1..390 | 2075 | 100 | Plus |
Su(var)205-PB | 206 | CG8409-PB | 24..115 | 26..131 | 159 | 34.9 | Plus |
Su(var)205-PA | 206 | CG8409-PA | 24..115 | 26..131 | 159 | 34.9 | Plus |
dikar-PG | 3080 | CG42799-PG | 401..625 | 88..315 | 156 | 23.2 | Plus |
dikar-PC | 3080 | CG42799-PC | 401..625 | 88..315 | 156 | 23.2 | Plus |