Clone RE66837 Report

Search the DGRC for RE66837

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:668
Well:37
Vector:pFlc-1
Associated Gene/TranscriptPc-RA
Protein status:RE66837.pep: gold
Preliminary Size:1794
Sequenced Size:2434

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32443 2001-12-14 Blastp of sequenced clone
CG7618 2002-01-01 Sim4 clustering to Release 2
CG32443 2003-01-01 Sim4 clustering to Release 3
Pc 2008-04-29 Release 5.5 accounting
Pc 2008-08-15 Release 5.9 accounting
CG7632 2008-08-15 Release 5.9 accounting
Pc 2008-12-18 5.12 accounting
CG7632 2008-12-18 5.12 accounting

Clone Sequence Records

RE66837.complete Sequence

2434 bp (2434 high quality bases) assembled on 2005-08-22

GenBank Submission: AY071619

> RE66837.complete
TAAACCAGAAGTTAATTGCAAATAAAACGAATAATAAAACGTTCCGAGAA
GATTATTAATTAAAAATGACTGGTCGAGGCAAGGGGAGTAAGGGGAAGTT
GGGGCGCGACAATGCGACCGACGATCCAGTCGATCTAGTGTACGCGGCTG
AGAAAATCATCCAAAAGCGCGTTAAGAAGGGCGTCGTGGAGTACCGTGTC
AAGTGGAAGGGCTGGAACCAGCGCTACAACACCTGGGAACCGGAGGTAAA
CATCCTGGATCGCCGCCTCATCGACATCTACGAACAAACGAACAAATCCT
CCGGAACTCCCTCCAAGCGAGGCATTAAGAAGAAGGAGAAAGAACCCGAT
CCGGAGCCGGAATCCGAGGAGGATGAGTACACCTTCACCGAAAACGATGT
GGACACGCATCAAGCCACCACCTCATCGGCTACCCACGATAAGGAGTCGA
AGAAGGAGAAGAAGCACCATCACCACCACCACCATCATCACCACATCAAG
TCCGAACGCAACAGTGGACGGCGCTCGGAATCTCCGCTGACCCACCATCA
TCATCACCACCACCACGAGTCCAAGCGTCAGCGCATTGATCACAGCTCCT
CCTCGAACAGCAGCTTCACGCACAACTCATTTGTCCCCGAGCCGGACAGC
AACTCCTCCAGCTCCGAGGATCAGCCGCTGATCGGCACCAAACGCAAAGC
CGAGGTGCTCAAGGAATCGGGCAAGATTGGAGTTACGATTAAGACCTCCC
CAGATGGCCCCACTATTAAGCCTCAGCCGACCCAGCAGGTAACTCCCAGC
CAGCAGCAGCCCTTCCAGGATCAGCAGCAAGCGGAAAAGATTGCCAGCGA
GGCTGCAACGCAGCTGAAATCTGAGCAGCAGGCCACCCCACTGGCCACAG
AAGCCATAAACACAACGCCCGCAGAGTCCGGAGCTGAGGAAGAAGAAGTA
GCCAACGAGGAAGGCAACCAACAGGCGCCACAGGTTCCTTCCGAGAACAA
TAACATACCAAAACCGTGCAACAACCTGGCTATCAACCAGAAACAGCCGC
TTACTCCTCTTTCGCCGCGTGCCCTTCCGCCGCGCTTCTGGCTGCCGGCC
AAATGCAACATATCCAACCGGGTGGTGATCACAGACGTCACCGTAAACCT
GGAGACCGTTACCATACGCGAGTGCAAGACGGAGCGCGGGTTTTTTCGTG
AGCGCGACATGAAAGGCGATTCGTCGCCAGTAGCTTGAGCTTCGACCCAA
ACAAATGTCGGGAAAACAAACCGGAAAACTGATACAATTGTAAATAGACA
AACCAAAATGCGAGAAAGTTGAGAGAAGAATTATGCAGAGAAATCCACAC
TAAATGTTGCTAAGCATTTTCTCTTTAGGACTTAACTAATTTATTGTATT
TATTTTTAGCGTAGGTTTTAGTTTGTTGTTTTATTACAATGTTTAATGTG
CAAGAGTAGTTTAAGCAAGCGCAAGTCGGGTATTTACTAAATGACTTTAT
ATATACATAAATTTTCGCTCATTTTTTTTATCAGCATTGCAATGATTGAA
TATTTTCCTATTTAAATTAAAAATTTATTTTTCTGCAATATCACTTTTTA
AGATTAATCTGGTTGTCATTTAGTGAATAGGCGAAATGCTGCGGCTGCTT
AACTTGCCAATGCAATAGATTGTAAAACTTGCAGCGTAGATAAATATGTA
TGTACATGTTACATATATTTACCACATATTGTATATTTTTTATAACACTT
TGAATCTGATTGAAAACAACACAAGACACTCAAATGCTAAGAAAACTCCA
TGCGAAACCGAAGCAATTGTTGATTACGCTTACAAATATATACAATAGAA
GATGCATATATTCGAGTAGTCACCACCACGTTTGCCGAGTTGGCTATCCC
AATGTTGTAATTGTTTAATATTATATTTCCTCGCGCCGACTGATTTTACA
AAAGAAAACCCCAAAAACATATATACAATTGTAGATTTACAAATATTTTT
AGACTTTAGCTAACCAAAATCTCTACGTAATATTTATTTTAACATGTTCT
CTTAGCAGTCATTCAAGACTCAAGTGCTGCCTTTATGGGTTCAGAGCGGT
GCAGTGCACAGATAATTCCAAATCGAGCCCATAGACTCATTACTTAAATC
CTATGTCTATTTCACAATTTTTTTTCACGCTATGAAACAGAAAACTACGT
GGGAGCTGCGGGGAATTTACAAACTCCTGCTTATTTCCCATGGGTCCTGT
GCGTATGTTTCTATTTGTCTTAGCTCTTTATTGGCTAGTTTTAGTTACGG
CGTAAATTCCACACAAAACAGCAATTCAAAGCGTATATTTTAAGCTTTTT
AATATAGTGTTTAACATTAATGTTATTGCCGGTATTGATTGTACATAATA
AATTAAATAGAAGCAACCAAAAAAAAAAAAAAAA

RE66837.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-RA 2586 Pc-RA 168..2586 1..2420 12060 99.9 Plus
CG7632.a 1400 CG7632.a 1334..1400 2420..2354 335 100 Minus
CG7632-RA 1533 CG7632-RA 1467..1533 2420..2354 335 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21304312..21306492 2358..178 10905 100 Minus
chr3L 24539361 chr3L 21306804..21306983 180..1 900 100 Minus
chr3L 24539361 chr3L 21295146..21295210 2418..2354 325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21315304..21317484 2358..178 10905 100 Minus
3L 28110227 3L 21317796..21317975 180..1 900 100 Minus
3L 28110227 3L 21306136..21306202 2420..2354 335 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21308404..21310584 2358..178 10905 100 Minus
3L 28103327 3L 21310896..21311075 180..1 900 100 Minus
3L 28103327 3L 21299236..21299302 2420..2354 335 100 Minus
Blast to na_te.dros performed 2019-03-15 22:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1436..1519 1629..1546 140 65.9 Minus
accord2 7650 accord2 QBERT 7650bp 5764..5827 1703..1768 118 66.7 Plus
1360 3409 1360 1360 3409bp 3003..3081 1511..1593 117 63.9 Plus

RE66837.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:52:08 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21304314..21306490 180..2356 97 <- Minus
chr3L 21295146..21295206 2357..2418 98 <- Minus
chr3L 21306805..21306983 1..179 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:48:42 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 1..1173 66..1238 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:11 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 1..1173 66..1238 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:02 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 1..1173 66..1238 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:57 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 1..1173 66..1238 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:18 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 1..1173 66..1238 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:48:42 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 2..2418 1..2418 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:11 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 2..2418 1..2418 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:02 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 46..2462 1..2418 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:57 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 2..2418 1..2418 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:18 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
Pc-RA 46..2462 1..2418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:08 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21306138..21306198 2357..2418 98 <- Minus
3L 21315306..21317482 180..2356 100 <- Minus
3L 21317797..21317975 1..179 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:08 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21306138..21306198 2357..2418 98 <- Minus
3L 21315306..21317482 180..2356 100 <- Minus
3L 21317797..21317975 1..179 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:52:08 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21306138..21306198 2357..2418 98 <- Minus
3L 21315306..21317482 180..2356 100 <- Minus
3L 21317797..21317975 1..179 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:02 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21299238..21299298 2357..2418 98 <- Minus
arm_3L 21308406..21310582 180..2356 100 <- Minus
arm_3L 21310897..21311075 1..179 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:28 Download gff for RE66837.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21308406..21310582 180..2356 100 <- Minus
3L 21310897..21311075 1..179 100   Minus
3L 21299238..21299298 2357..2418 98 <- Minus

RE66837.pep Sequence

Translation from 65 to 1237

> RE66837.pep
MTGRGKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGW
NQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPES
EEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNS
GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSS
EDQPLIGTKRKAEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPF
QDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEG
NQQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNIS
NRVVITDVTVNLETVTIRECKTERGFFRERDMKGDSSPVA*

RE66837.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24200-PA 397 GF24200-PA 15..397 15..390 1180 78.1 Plus
Dana\GF20154-PA 251 GF20154-PA 1..251 1..309 584 57.1 Plus
Dana\GF13165-PA 116 GF13165-PA 13..104 99..192 176 63.8 Plus
Dana\GF15276-PA 210 GF15276-PA 23..70 26..73 151 56.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13243-PA 389 GG13243-PA 1..389 1..390 1988 96.4 Plus
Dere\GG23468-PA 205 GG23468-PA 23..74 26..77 152 55.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16158-PA 392 GH16158-PA 6..392 23..390 995 65.5 Plus
Dgri\GH10251-PA 203 GH10251-PA 24..83 26..85 152 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-PA 390 CG32443-PA 1..390 1..390 2075 100 Plus
Su(var)205-PB 206 CG8409-PB 24..115 26..131 159 34.9 Plus
Su(var)205-PA 206 CG8409-PA 24..115 26..131 159 34.9 Plus
dikar-PG 3080 CG42799-PG 401..625 88..315 156 23.2 Plus
dikar-PC 3080 CG42799-PC 401..625 88..315 156 23.2 Plus
dikar-PD 3222 CG42799-PD 401..625 88..315 156 23.2 Plus
dikar-PF 3261 CG42799-PF 401..625 88..315 156 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13310-PA 368 GI13310-PA 6..368 23..390 1099 72.3 Plus
Dmoj\GI15430-PA 226 GI15430-PA 25..76 26..77 145 53.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24588-PA 373 GL24588-PA 1..373 1..390 1129 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16908-PA 373 GA16908-PA 1..373 1..390 1129 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22147-PA 366 GM22147-PA 1..366 1..390 1374 87.7 Plus
Dsec\GM13138-PA 206 GM13138-PA 24..75 26..77 150 55.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12124-PA 390 GD12124-PA 1..390 1..390 2034 97.9 Plus
Dsim\GD22433-PA 206 GD22433-PA 24..75 26..77 148 55.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12080-PA 364 GJ12080-PA 6..364 23..390 1012 72.8 Plus
Dvir\Su(var)205-PA 213 GJ17281-PA 24..75 26..77 148 53.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20423-PA 408 GK20423-PA 1..408 1..390 1013 65 Plus
Dwil\GK14980-PA 205 GK14980-PA 21..72 26..77 159 53.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22965-PA 389 GE22965-PA 1..389 1..390 1986 96.4 Plus
Dyak\GE22343-PA 221 GE22343-PA 1..207 1..208 1055 96.2 Plus
Dyak\Su(var)205-PA 205 GE11133-PA 23..74 26..77 149 55.8 Plus

RE66837.hyp Sequence

Translation from 65 to 1237

> RE66837.hyp
MTGRGKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGW
NQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPES
EEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNS
GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSS
EDQPLIGTKRKAEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPF
QDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEG
NQQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNIS
NRVVITDVTVNLETVTIRECKTERGFFRERDMKGDSSPVA*

RE66837.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Pc-PA 390 CG32443-PA 1..390 1..390 2075 100 Plus
Su(var)205-PB 206 CG8409-PB 24..115 26..131 159 34.9 Plus
Su(var)205-PA 206 CG8409-PA 24..115 26..131 159 34.9 Plus
dikar-PG 3080 CG42799-PG 401..625 88..315 156 23.2 Plus
dikar-PC 3080 CG42799-PC 401..625 88..315 156 23.2 Plus