Clone RE66907 Report

Search the DGRC for RE66907

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:669
Well:7
Vector:pFlc-1
Associated Gene/TranscriptFas3-RB
Protein status:RE66907.pep: gold
Preliminary Size:1521
Sequenced Size:2098

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5803 2002-01-01 Sim4 clustering to Release 2
CG5803 2002-11-12 Blastp of sequenced clone
CG5803 2003-01-01 Sim4 clustering to Release 3
Fas3 2008-04-29 Release 5.5 accounting
Fas3 2008-08-15 Release 5.9 accounting
Fas3 2008-12-18 5.12 accounting

Clone Sequence Records

RE66907.complete Sequence

2098 bp (2098 high quality bases) assembled on 2002-11-12

GenBank Submission: AY075516

> RE66907.complete
AGTCGTTTGGTAACTGTTGCTCCTATCAGTCGTTCTCTGTCGCTCTTGGA
TTGCGTGGGCACATCGGTCGTTCGGCATTTTGGGTTCGGCATTTCGGGAT
TTGATATCGTTATTCGTGTCGGAATCGTATAAACCTGCGTCCGTGTGCGT
TAGCCGGCCATTGAGCACTATCGCTGCCACTGGCATTTGGCCCACCGTGT
GTGTTTACAAGTGTGGCATAATCTTCGATTAGCGCAAACCAACCGATCGG
ATATACCCCTTGAAAATAACAAATAATAGCGAGGAGTTAAAAAAGCATCC
AAACACACACTGCACACCCCAAAACACACACACACACCCACACGTCACAT
AAAAAATATAAACCAGAGCCTCAGCGGCCGTAAAGTGCCACCAAAACGTA
CTTGGCCGTATATTTTATGCATGAAAAGCTAAAGCAAGTGCAACCAAACG
CCTGAGTGACACCAAGAAAAAAAATTCATACACACATATAAGGAAACCCA
AAAAAACAAAACCGGGATTACTTATACGCTCACGCTCAGTAGAAAAAATA
CGCGAAGCCAAAGGAAGTCAGCAGCAAAATCATGTCACGGATCGTTTTTA
TATGTCTCGCAGCCATCTTAACAGATGCACTCACCTGGGCCCAGGTGAAT
GTGGAACCCAACACAGCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCT
CTGTCGGTACGGCAGATCCATCAACTACTGCCGCATTGAGATTCCCGGCG
AGCAGAAGGTACTCAACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTC
ACGTACTTCGGAGCGGGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGA
GAGGGTCAAGGCCAGCAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCG
AGGGAGAGGAGCTGTCGGGCACCATCGACCTGGTCGTGGCACTGCGTCCC
CAGCAGCCCATCATCGAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTT
CAACGAGGGCACTGAATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTC
CGCCGGCTAACATCTCGTGGTACATCGACAACATGCCGGCCAACAAGCGC
ACCACTCCCCTGGAGGTCATGTCCTCGACCAACGACAACGTGGAGCTATC
GACCTCCGTGCAGGAAATCCAGTGGCACCTGTCGCCCGAGGACAGCAACC
GGAAACTGGTCTGCCGCTCCCACCACCAAACCGATCGCGAGAGTGTGCCG
CCCCAGGAAGCTGCCTACATCATCAACGTGCGCTATGCTCCCGTCCATCA
GCCAGATGCCGCCGTGTATGGACTCTACCTCGAGCACACTGCCATTGTGA
ACATAACCATCCGCGCCAGTCCGCAGCCCAAGATCGAGTGGACCATCGAT
GGAGCTATTGTGGGGCAGGGACGCACCGATGGACGCTACTCGGCGTATGA
GCCGCAGTATCTGGGCAACGATGAGTACAACGTTACACTGGCCATTGCCG
GACTGACCCTGGAAGATACCACCAAAATCTACAATCTGAGGGCCAGCAAT
GAACTGGGACTGACGGACTACCAGGTGCGAATCAGTTCGTCGAGCAAACC
GCCCAGCAGCAGCCTCGATGTGGCGGCAATCGTTGGCATTGTGGTCGCCG
TTGCCGTTTTGGTCCTGGTCGTTTTACTGATTGTGTTTGCACGGGCTACT
GGCCGATGGTGTTTTGGCGGCAAATCAATCAAGACGCCCACAAACGAAAC
CAAGACAAACAACTCGTCTATGCTGAACTTGTACTAAAGCCAGCCAATGA
GGCGACACCAGCAACAACACCAGCGCCAACAACAGCAGCAGCAACAACAA
CAACGCCGGAGGGCTCTGGAGCCGGGGTCAAAAGTTCAACGGAATACGCC
GAAATAGTCTATGTGCAAAAGGGAGGCGAAGGAAAAAAATAATCTAGCAC
ATCAATATAAAAATCCCTGGGAGGCTGACACAGTAACAAATACAGATGAA
TGCACAAAAATTAAGGAGCAGAAACGTAAACACAAACCCAGTGCAGCATA
AAAGTAAACTCTACGATGATATTAAGAATGCTAAAAAAAAAAAAAAAA

RE66907.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3.d 3306 Fas3.d 49..1800 1..1752 8760 100 Plus
Fas3.b 2799 Fas3.b 49..1800 1..1752 8760 100 Plus
Fas3.g 2765 Fas3.g 25..1776 1..1752 8760 100 Plus
Fas3.d 3306 Fas3.d 2104..2457 1743..2096 1710 98.8 Plus
Fas3.b 2799 Fas3.b 2104..2457 1743..2096 1710 98.8 Plus
Fas3.g 2765 Fas3.g 2155..2504 1747..2096 1705 99.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18318777..18319400 1..624 3105 99.8 Plus
chr2L 23010047 chr2L 18383133..18383568 1285..1720 2180 100 Plus
chr2L 23010047 chr2L 18382513..18382854 943..1284 1710 100 Plus
chr2L 23010047 chr2L 18390919..18391249 1751..2081 1640 99.7 Plus
chr2L 23010047 chr2L 18382073..18382393 622..942 1605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:11:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18320107..18320730 1..624 3120 100 Plus
2L 23513712 2L 18384459..18384894 1285..1720 2180 100 Plus
2L 23513712 2L 18383839..18384180 943..1284 1710 100 Plus
2L 23513712 2L 18392245..18392590 1751..2096 1700 99.4 Plus
2L 23513712 2L 18383399..18383719 622..942 1605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18320107..18320730 1..624 3120 100 Plus
2L 23513712 2L 18384459..18384894 1285..1720 2180 100 Plus
2L 23513712 2L 18383839..18384180 943..1284 1710 100 Plus
2L 23513712 2L 18392245..18392590 1751..2096 1700 99.4 Plus
2L 23513712 2L 18383399..18383719 622..942 1605 100 Plus
2L 23513712 2L 18387286..18387317 1719..1750 160 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:02:36 has no hits.

RE66907.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:03:27 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18385961..18385991 1720..1750 100 -> Plus
chr2L 18318777..18319400 1..624 99 -> Plus
chr2L 18382076..18382393 625..942 100 -> Plus
chr2L 18382513..18382854 943..1284 100 -> Plus
chr2L 18383133..18383567 1285..1719 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:15:40 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1..1206 582..1787 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:04:55 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1..1206 582..1787 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:04:11 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1..1206 582..1787 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:15 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1..1206 582..1787 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:36:05 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1..1206 582..1787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:15:39 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 7..2087 1..2082 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:04:55 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 7..2087 1..2082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:11 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 6..2086 1..2082 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:15 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 7..2087 1..2082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:05 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 6..2086 1..2082 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:27 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18392245..18392575 1751..2082 99   Plus
2L 18320107..18320730 1..624 100 -> Plus
2L 18383402..18383719 625..942 100 -> Plus
2L 18383839..18384180 943..1284 100 -> Plus
2L 18384459..18384893 1285..1719 100 -> Plus
2L 18387287..18387317 1720..1750 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:27 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18392245..18392575 1751..2082 99   Plus
2L 18320107..18320730 1..624 100 -> Plus
2L 18383402..18383719 625..942 100 -> Plus
2L 18383839..18384180 943..1284 100 -> Plus
2L 18384459..18384893 1285..1719 100 -> Plus
2L 18387287..18387317 1720..1750 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:03:27 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18392245..18392575 1751..2082 99   Plus
2L 18320107..18320730 1..624 100 -> Plus
2L 18383402..18383719 625..942 100 -> Plus
2L 18383839..18384180 943..1284 100 -> Plus
2L 18384459..18384893 1285..1719 100 -> Plus
2L 18387287..18387317 1720..1750 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:11 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18383402..18383719 625..942 100 -> Plus
arm_2L 18320107..18320730 1..624 100 -> Plus
arm_2L 18383839..18384180 943..1284 100 -> Plus
arm_2L 18384459..18384893 1285..1719 100 -> Plus
arm_2L 18387287..18387317 1720..1750 100 -> Plus
arm_2L 18392245..18392575 1751..2082 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:27:28 Download gff for RE66907.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18392245..18392575 1751..2082 99   Plus
2L 18320107..18320730 1..624 100 -> Plus
2L 18383402..18383719 625..942 100 -> Plus
2L 18383839..18384180 943..1284 100 -> Plus
2L 18384459..18384893 1285..1719 100 -> Plus
2L 18387287..18387317 1720..1750 100 -> Plus

RE66907.pep Sequence

Translation from 581 to 1786

> RE66907.pep
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETKTNNSSMLNL
Y*

RE66907.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15054-PA 785 GF15054-PA 280..668 9..396 1694 88.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21115-PA 509 GG21115-PA 1..396 1..396 2093 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11209-PA 526 GH11209-PA 1..397 1..396 1714 86.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-PF 401 CG5803-PF 1..401 1..401 2079 100 Plus
Fas3-PB 401 CG5803-PB 1..401 1..401 2079 100 Plus
Fas3-PG 557 CG5803-PG 1..396 1..396 2027 98.7 Plus
Fas3-PA 508 CG5803-PA 1..396 1..396 2027 98.7 Plus
Fas3-PE 577 CG5803-PE 1..391 1..391 2024 99.7 Plus
Fas3-PD 577 CG5803-PD 1..391 1..391 2024 99.7 Plus
Fas3-PC 475 CG5803-PC 1..385 1..385 1979 99 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18132-PA 526 GI18132-PA 1..397 1..396 1699 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18701-PA 521 GL18701-PA 1..397 1..396 1768 90.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19141-PA 518 GA19141-PA 1..397 1..396 1772 90.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17274-PA 401 GM17274-PA 1..401 1..401 2133 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24138-PA 508 GD24138-PA 1..396 1..396 2093 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17756-PA 362 GJ17756-PA 1..347 1..346 1576 87.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15545-PA 512 GK15545-PA 4..400 1..396 1652 85.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13188-PA 508 GE13188-PA 1..396 1..396 2059 97.5 Plus

RE66907.hyp Sequence

Translation from 581 to 1786

> RE66907.hyp
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETKTNNSSMLNL
Y*

RE66907.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-PF 401 CG5803-PF 1..401 1..401 2079 100 Plus
Fas3-PB 401 CG5803-PB 1..401 1..401 2079 100 Plus
Fas3-PA 508 CG5803-PA 1..396 1..396 2027 98.7 Plus
Fas3-PG 557 CG5803-PG 1..396 1..396 2027 98.7 Plus
Fas3-PE 577 CG5803-PE 1..391 1..391 2024 99.7 Plus